genome.fa.s5.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  141  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44261528--44261851	144	2.2	143	85	3	425	27	16	28	27	1.97
44262709--44262744	15	2.4	15	90	0	54	36	5	0	58	1.22
44266795--44266852	29	2.0	29	100	0	116	48	10	6	34	1.64
44268556--44268666	45	2.5	45	93	0	186	33	9	9	46	1.70
44269082--44269148	32	2.1	32	83	5	82	43	2	25	28	1.69
44269327--44269455	58	2.2	59	88	4	190	51	3	0	44	1.25
44269327--44269469	59	2.4	58	86	6	191	51	3	1	43	1.27
44277973--44278039	34	2.0	34	96	0	125	37	22	5	34	1.79
44283760--44283840	40	2.0	40	87	0	117	20	22	27	29	1.99
44283801--44283900	28	3.6	27	84	8	137	22	17	29	32	1.96
44289265--44289303	19	2.1	19	85	0	51	2	30	0	66	1.05
44290662--44290812	60	2.5	62	83	9	170	28	19	24	27	1.99
44293392--44293433	22	1.9	22	85	9	59	66	9	7	16	1.42
44294104--44294143	21	1.9	21	89	0	62	15	15	17	52	1.75
44297809--44297848	20	2.0	20	100	0	80	35	5	20	40	1.74
44298077--44298165	21	4.2	21	77	5	72	17	13	11	57	1.65
44298109--44298152	22	2.0	22	86	0	61	18	18	11	52	1.74
44298352--44298385	18	1.9	17	88	5	50	41	0	0	58	0.98
44301932--44301966	13	2.7	13	86	0	52	40	2	0	57	1.14
44304189--44304278	42	2.1	43	85	2	119	25	2	11	61	1.41
44304289--44304342	18	2.9	19	71	17	60	24	7	16	51	1.69
44304326--44304391	34	2.0	33	87	3	96	18	9	10	62	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44309621--44309655	10	3.3	10	85	14	52	0	22	0	77	0.78
44309621--44309663	20	2.0	20	91	8	68	0	27	0	72	0.85
44309681--44309730	24	2.1	23	85	10	66	10	12	0	78	0.98
44309745--44309788	23	1.9	23	90	0	70	38	2	0	59	1.10
44313473--44313538	26	2.6	25	76	4	69	34	18	22	24	1.96
44320302--44320357	24	2.3	24	84	6	69	12	14	25	48	1.78
44320880--44320941	28	2.2	28	85	5	81	35	17	24	22	1.95
44328807--44328943	70	1.9	71	92	1	231	39	2	8	50	1.44
44328862--44329026	89	1.9	89	86	5	237	36	1	7	53	1.41
44333003--44333044	13	3.3	13	83	6	59	47	0	2	50	1.14
44333007--44333049	18	2.4	19	80	7	54	48	0	4	46	1.22
44333110--44333189	40	2.0	40	97	0	151	36	10	21	32	1.86
44333725--44333783	22	2.7	22	81	0	64	30	22	18	28	1.97
44334443--44334514	20	3.5	20	75	11	65	38	1	5	54	1.33
44346650--44346688	21	1.9	20	84	5	51	12	7	0	79	0.93
44357363--44357473	43	2.6	43	85	2	143	34	27	15	23	1.94
44357374--44357497	43	2.9	44	85	2	135	33	25	15	25	1.95
44363458--44363482	13	1.9	13	100	0	50	20	24	32	24	1.98
44365087--44365112	9	2.9	9	100	0	52	46	30	0	23	1.53
44365932--44366011	12	6.7	13	69	18	50	67	0	0	32	0.91
44365967--44366012	5	10.2	5	78	21	57	78	0	0	21	0.76
44365967--44366012	9	5.2	9	97	2	85	78	0	0	21	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44373113--44373366	140	1.8	139	83	6	343	27	18	29	24	1.98
44376060--44376101	8	5.2	8	85	0	57	57	0	2	40	1.12
44376093--44376139	22	2.1	23	84	4	60	72	2	12	12	1.21
44393451--44393555	43	2.5	43	82	3	124	26	20	23	29	1.99
44393451--44393568	41	2.8	42	79	11	127	25	19	24	30	1.98
44400835--44400863	13	2.2	13	100	0	58	13	27	37	20	1.91
44405337--44405375	21	1.9	20	89	5	60	46	17	0	35	1.49
44406300--44406483	68	2.7	68	85	0	260	25	23	16	34	1.95
44410726--44410786	31	2.0	31	83	0	77	44	13	18	24	1.85
44411007--44411094	19	4.8	19	69	16	60	39	0	3	56	1.16
44414186--44414901	351	2.0	351	92	0	1180	25	24	26	22	2.00
44419898--44419934	20	1.9	19	89	10	58	18	2	8	70	1.25
44420202--44420294	27	3.2	29	72	15	70	19	9	18	52	1.72
44420238--44420294	27	2.1	27	87	9	82	19	8	15	56	1.65
44422769--44422822	20	2.6	21	82	11	67	35	0	7	57	1.27
44422808--44422856	3	17.3	3	76	19	52	28	2	0	69	1.00
44422812--44422850	11	3.5	11	92	0	69	28	2	0	69	1.02
44422808--44422849	19	2.2	19	87	8	59	26	2	0	71	0.98
44424988--44425104	23	5.0	23	74	12	103	15	26	24	33	1.95
44427663--44427778	50	2.2	53	87	4	166	25	25	12	37	1.90
44429726--44429775	9	5.4	9	79	11	57	62	0	0	38	0.96
44429727--44429776	18	2.8	17	82	8	64	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44433915--44433965	20	2.6	19	79	17	59	15	27	17	39	1.90
44438486--44438541	26	2.2	26	100	0	112	35	26	7	30	1.83
44448406--44448484	3	26.3	3	94	0	140	35	0	30	34	1.58
44449029--44449058	14	2.1	14	93	0	51	40	16	13	30	1.87
44452716--44452783	33	2.1	33	91	0	109	35	16	11	36	1.85
44453774--44453814	20	2.0	20	100	0	82	51	4	14	29	1.63
44454940--44454985	19	2.3	20	92	7	85	30	10	10	47	1.73
44455806--44455838	15	2.2	15	94	0	57	39	18	24	18	1.92
44456858--44456903	23	2.0	23	84	12	60	45	10	6	36	1.65
44456865--44456909	23	2.0	23	82	8	56	40	13	8	37	1.76
44461868--44461917	25	2.0	25	88	7	75	58	4	34	4	1.36
44467778--44467823	24	1.9	24	100	0	92	71	8	15	4	1.26
44492448--44492473	13	2.0	13	100	0	52	23	23	30	23	1.99
44496827--44496985	43	3.7	43	77	9	146	28	24	19	27	1.99
44506197--44506265	34	2.0	34	100	0	138	46	20	11	21	1.82
44510696--44510745	22	2.2	21	82	10	55	68	0	4	28	1.08
44519144--44519192	18	2.7	18	90	0	80	34	14	24	26	1.94
44521378--44521422	23	2.0	23	86	8	65	40	0	6	53	1.27
44522461--44522522	31	2.0	31	84	9	83	30	12	17	38	1.88
44531450--44531600	55	2.8	54	81	4	178	50	16	7	25	1.70
44539646--44541315	414	4.0	414	98	0	3232	32	20	14	33	1.92
44547775--44547803	6	4.8	6	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44550277--44550309	17	2.0	17	88	5	50	48	3	0	48	1.17
44550454--44550516	32	2.0	32	90	0	99	46	7	3	42	1.49
44550454--44550542	32	2.7	32	80	15	92	44	6	3	44	1.46
44550706--44550755	24	2.1	24	96	0	91	34	14	4	48	1.62
44551399--44551538	71	2.0	71	98	0	271	25	17	5	51	1.67
44552223--44552259	17	2.2	17	90	0	56	54	0	0	45	1.00
44558366--44558470	17	6.2	16	70	13	68	49	13	9	27	1.73
44558491--44558706	18	12.4	17	72	10	123	43	11	13	31	1.79
44558505--44558705	35	5.7	35	71	9	122	43	11	13	31	1.80
44558505--44558715	17	11.9	18	74	9	159	43	11	13	30	1.80
44558505--44558715	36	6.0	36	72	9	159	43	11	13	30	1.80
44558537--44558710	89	2.0	89	81	3	208	41	11	14	32	1.81
44558736--44558777	18	2.4	17	84	11	50	40	7	14	38	1.73
44558804--44558849	19	2.5	19	82	10	51	45	6	13	34	1.69
44558823--44558886	18	3.7	17	76	16	60	46	12	12	28	1.78
44558941--44559031	18	5.2	17	72	6	65	50	12	9	27	1.71
44558941--44559038	17	5.6	17	74	9	72	51	12	10	26	1.71
44558941--44559027	35	2.5	35	75	3	95	49	12	9	28	1.71
44559651--44559731	8	10.2	8	79	11	87	0	19	0	80	0.72
44559651--44559731	15	5.1	15	84	11	92	0	19	0	80	0.72
44559653--44559731	23	3.3	23	85	7	97	0	18	0	81	0.70
44560011--44560066	3	17.0	3	85	14	67	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44560002--44560066	10	6.6	10	81	13	73	0	29	0	70	0.87
44560002--44560066	13	5.0	13	84	14	73	0	29	0	70	0.87
44560430--44560546	30	3.9	29	79	11	103	45	3	21	29	1.68
44560445--44560546	30	3.4	30	87	2	143	45	3	21	29	1.70
44560411--44560546	60	2.3	59	83	5	159	42	3	22	31	1.71
44560817--44561034	54	4.1	55	87	8	324	37	16	16	29	1.91
44561013--44561047	14	2.5	14	95	0	61	60	0	17	22	1.37
44561122--44561150	15	1.9	15	100	0	58	72	6	6	13	1.26
44561122--44561155	13	2.4	14	90	9	52	70	8	8	11	1.34
44561358--44562162	193	4.2	192	97	1	1490	34	20	13	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325