Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  294  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93779234--93779285
18
2.8
19
91
5
88
57
38
0
3
1.17
93779233--93779285
19
2.8
19
85
8
81
56
39
0
3
1.17
93779805--93779849
24
1.9
23
90
4
72
40
6
2
51
1.41
93779766--93779842
39
2.0
39
84
5
102
32
6
5
55
1.47
93781811--93781846
12
3.0
12
91
0
54
25
22
5
47
1.73
93789268--93789317
23
2.2
23
92
0
82
60
18
14
8
1.58
93790169--93790309
76
1.9
76
90
0
228
29
17
22
31
1.96
93790249--93790371
62
2.0
62
91
0
201
35
17
23
22
1.95
93790183--93790447
138
1.9
138
87
4
392
29
18
24
27
1.98
93790642--93790948
74
3.9
75
70
18
237
29
19
22
28
1.98
93790304--93791111
165
4.8
166
93
1
1296
29
19
20
30
1.97
93790304--93791111
332
2.4
333
92
1
1300
29
19
20
30
1.97
93790879--93791050
91
1.9
91
84
4
231
26
21
19
32
1.97
93790953--93791199
78
3.2
77
78
10
304
27
18
18
35
1.95
93791851--93791908
21
2.8
20
90
10
91
50
44
0
5
1.24
93792190--93792233
13
3.4
13
75
12
54
0
11
6
81
0.86
93792281--93792326
17
2.7
17
93
0
74
8
28
56
6
1.54
93792424--93792498
39
1.9
39
83
5
98
33
6
5
54
1.49
93792835--93792859
12
2.1
12
100
0
50
32
8
0
60
1.26
93797613--93797976
180
2.0
180
92
1
604
31
10
18
40
1.83
93806275--93806305
15
2.1
15
100
0
62
22
12
32
32
1.92
93809232--93809270
12
3.0
13
85
11
53
28
0
0
71
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93813103--93813160
30
1.9
31
86
6
84
58
8
0
32
1.28
93814222--93814260
18
2.1
19
90
4
62
61
5
0
33
1.18
93818057--93818086
6
5.0
6
100
0
60
16
33
0
50
1.46
93818924--93818962
20
2.0
20
94
0
69
66
2
17
12
1.35
93824593--93824697
42
2.5
41
80
11
115
37
20
20
21
1.95
93824673--93825407
42
17.6
42
82
3
658
41
16
16
25
1.89
93826568--93826712
70
2.1
70
96
2
265
39
11
6
42
1.67
93827871--93827933
23
2.7
23
76
11
58
57
4
6
31
1.45
93830087--93830123
14
2.6
14
91
0
65
56
5
18
18
1.60
93830140--93830339
76
2.6
75
80
14
244
28
22
17
32
1.96
93830140--93830339
79
2.6
77
81
12
248
28
22
17
32
1.96
93830430--93830459
14
2.1
14
93
0
51
66
6
10
16
1.41
93830194--93830707
87
6.0
87
86
4
672
36
18
16
28
1.92
93830190--93830707
175
3.0
174
84
6
684
36
18
16
28
1.92
93830628--93830761
71
1.9
72
93
3
234
29
23
17
29
1.97
93830617--93830780
71
2.3
72
86
5
224
37
20
15
26
1.92
93843062--93843134
23
3.1
23
73
16
60
54
6
6
31
1.53
93856845--93856873
15
1.9
15
100
0
58
48
0
34
17
1.47
93856870--93856894
7
3.6
7
100
0
50
48
36
0
16
1.46
93858038--93858514
67
7.3
66
68
12
246
33
12
15
38
1.85
93858025--93858946
131
7.0
131
85
0
1108
32
13
14
38
1.86
93858025--93858946
393
2.3
393
84
1
1222
32
13
14
38
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93870342--93870385
23
1.9
23
86
9
63
36
0
25
38
1.56
93874114--93874203
45
2.0
45
97
0
171
36
8
25
28
1.86
93879669--93879706
20
1.9
20
88
0
58
50
0
0
50
1.00
93879732--93879775
17
2.6
17
85
7
54
61
2
2
34
1.21
93891673--93891750
28
2.8
28
88
0
111
30
25
12
30
1.93
93894881--93896018
120
9.5
120
98
0
2098
43
2
5
47
1.40
93894881--93896018
599
1.9
600
96
0
2116
43
2
5
47
1.40
93895727--93895761
18
2.0
17
88
5
52
45
0
0
54
0.99
93895967--93896001
18
2.0
17
88
5
52
45
0
0
54
0.99
93896166--93896256
45
2.0
45
85
2
121
37
28
6
27
1.82
93896237--93896288
16
3.2
16
94
0
95
36
36
1
25
1.67
93901017--93901058
21
2.0
20
86
13
59
4
19
2
73
1.12
93905039--93905089
22
2.4
21
87
6
75
47
23
21
7
1.77
93906954--93907174
40
5.6
41
80
9
237
24
23
27
23
2.00
93909521--93909583
27
2.3
27
83
0
63
31
14
30
23
1.94
93909630--93909721
27
3.4
26
76
16
82
25
19
34
20
1.96
93909646--93909755
54
2.0
54
82
0
130
24
19
32
23
1.97
93914539--93914577
21
1.9
20
84
5
51
15
10
23
51
1.73
93915555--93915625
20
3.2
25
61
29
59
46
28
0
25
1.53
93915546--93915629
42
2.0
42
97
0
159
48
28
0
22
1.51
93916680--93916717
16
2.4
16
90
0
58
31
0
34
34
1.58
93916696--93916790
45
2.1
44
88
1
136
34
5
27
32
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93916952--93916986
18
2.0
17
88
5
52
54
0
0
45
0.99
93917099--93917133
18
2.0
17
88
5
52
54
0
0
45
0.99
93916871--93917145
147
1.9
149
95
1
500
46
3
3
47
1.35
93917119--93917297
55
3.1
54
64
22
128
49
7
2
41
1.43
93917219--93917253
18
2.0
17
88
5
52
60
0
0
40
0.97
93917329--93917360
16
1.9
17
93
6
57
46
0
0
53
1.00
93917082--93917374
120
2.4
120
92
2
482
50
5
2
42
1.36
93917390--93917597
91
2.3
91
85
4
258
47
3
4
44
1.41
93918388--93918418
14
2.2
14
100
0
62
45
29
6
19
1.75
93924003--93924070
19
3.4
19
70
18
66
39
1
8
50
1.43
93923984--93924068
41
2.1
41
100
0
170
36
2
9
51
1.47
93928327--93928443
58
2.0
58
88
0
171
34
25
15
24
1.95
93929353--93929384
14
2.2
15
94
5
57
3
12
6
78
1.06
93929394--93929477
8
10.8
8
89
5
136
60
1
1
36
1.12
93931061--93931129
21
3.3
21
68
8
59
43
17
24
14
1.86
93935651--93935692
20
2.1
20
100
0
84
28
4
26
40
1.76
93938504--93938554
26
2.0
25
85
11
68
74
0
11
13
1.07
93953754--93953821
33
2.1
33
91
0
109
27
10
7
54
1.61
93956488--93956529
22
1.9
22
85
0
57
26
21
38
14
1.91
93959015--93959039
11
2.3
11
100
0
50
16
0
0
84
0.63
93962172--93962262
43
2.1
43
100
0
182
43
10
23
21
1.84
93965363--93965406
21
2.0
22
82
4
54
43
11
0
45
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93966859--93966918
26
2.3
26
91
0
93
40
10
16
33
1.82
93968010--93968047
18
2.1
19
90
5
60
60
0
18
21
1.36
93970965--93971001
17
2.2
17
90
4
58
5
8
10
75
1.17
93970973--93971011
17
2.3
17
86
8
53
5
15
7
71
1.26
93977009--93977075
21
3.2
20
80
15
75
61
0
7
31
1.24
93977094--93977137
22
1.9
22
86
9
61
45
6
9
38
1.63
93977720--93977786
26
2.5
26
83
9
82
65
1
10
22
1.31
93977793--93977817
6
4.2
6
100
0
50
52
0
16
32
1.44
93979013--93979092
23
3.5
22
86
10
99
18
0
35
46
1.50
93982506--93982543
18
2.1
18
100
0
76
26
15
0
57
1.38
93984099--93984172
31
2.4
31
79
2
85
35
9
6
48
1.62
93983750--93985503
882
2.0
870
82
5
2126
39
9
13
37
1.78
93986621--93986677
25
2.2
26
90
6
89
59
3
0
36
1.14
93989858--93989897
17
2.4
17
84
12
55
80
0
20
0
0.72
94002697--94002843
49
3.0
49
75
4
143
26
15
29
28
1.96
94003081--94003172
48
1.9
48
88
0
139
31
5
21
41
1.76
94012616--94012656
10
4.3
10
75
12
50
51
7
0
41
1.30
94012616--94012656
14
2.9
14
79
13
57
51
7
0
41
1.30
94012647--94012691
21
2.1
21
88
8
65
42
11
6
40
1.67
94016906--94016960
26
2.2
24
80
6
56
54
16
1
27
1.52
94018078--94018168
35
2.5
37
91
8
150
36
15
10
37
1.83
94018078--94018168
19
4.9
19
92
8
161
36
15
10
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94018287--94018325
21
1.9
20
84
5
51
10
2
15
71
1.23
94018532--94018656
43
2.8
44
80
3
153
28
28
13
30
1.94
94018684--94019213
78
6.8
78
91
0
801
25
23
18
32
1.97
94018618--94019213
234
2.5
234
88
3
841
25
23
18
32
1.97
94019174--94019256
43
1.9
43
85
2
112
21
21
19
37
1.94
94019415--94019515
40
2.4
41
85
4
123
34
21
13
29
1.92
94019156--94019714
224
2.5
219
85
4
714
25
21
18
34
1.96
94028155--94028199
22
2.0
22
86
4
63
37
17
6
37
1.76
94028178--94028250
19
3.9
19
91
7
123
35
16
9
38
1.81
94028170--94028250
36
2.2
37
87
10
123
34
17
8
39
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325