Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  126  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39342091--39342150
29
2.1
29
100
0
120
46
10
13
30
1.75
39342410--39342436
9
3.0
9
100
0
54
44
22
0
33
1.53
39348317--39348452
57
2.4
58
80
6
143
30
6
2
60
1.34
39355006--39355049
3
14.7
3
100
0
88
34
0
0
65
0.93
39359405--39359508
42
2.5
41
80
4
118
31
19
19
29
1.96
39362468--39362532
28
2.3
28
83
0
85
40
6
23
30
1.79
39362605--39362865
39
6.7
39
84
5
305
21
21
27
30
1.98
39368966--39369045
28
2.9
28
82
0
88
36
11
21
31
1.88
39369120--39369342
39
5.7
39
90
1
331
18
21
29
29
1.97
39377247--39377302
27
2.1
27
96
0
103
32
25
0
42
1.55
39378432--39378488
9
6.4
9
77
4
62
26
12
0
61
1.31
39378429--39378465
18
2.1
18
100
0
74
27
5
0
67
1.12
39380063--39380112
6
8.3
6
90
0
73
16
2
2
80
0.91
39384384--39384446
31
2.0
31
100
0
126
46
15
9
28
1.78
39388146--39388322
21
8.4
21
71
7
126
19
22
13
44
1.85
39388146--39388305
42
3.8
42
81
3
160
18
21
14
45
1.85
39388164--39388322
63
2.5
63
85
2
203
18
22
12
45
1.83
39398746--39398794
24
2.0
24
96
0
89
40
6
26
26
1.79
39403169--39403203
18
2.0
18
88
5
54
68
0
0
31
0.90
39403457--39403514
22
2.6
22
81
7
64
41
17
5
36
1.72
39403484--39403531
19
2.5
19
75
25
55
33
16
8
41
1.78
39403496--39403573
36
2.2
36
88
9
115
37
12
12
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39403493--39403565
19
3.9
19
92
7
132
35
15
10
38
1.82
39403900--39404038
45
3.1
45
89
1
208
27
30
12
29
1.93
39404003--39404284
78
3.4
83
82
11
323
26
24
18
30
1.98
39404071--39404284
78
2.7
77
90
2
338
25
23
19
31
1.98
39412817--39412850
17
2.0
17
88
11
52
67
0
0
32
0.91
39413104--39413161
22
2.6
22
81
7
64
41
17
5
36
1.72
39413140--39413176
19
1.9
19
94
0
65
35
13
10
40
1.80
39413143--39413184
19
2.3
19
84
8
52
38
9
14
38
1.78
39421019--39421133
44
2.6
43
76
12
101
26
24
18
31
1.97
39428200--39428358
44
3.7
42
73
11
133
28
24
18
28
1.98
39429761--39429968
67
3.1
67
73
12
189
32
16
27
22
1.96
39430265--39430417
28
5.6
27
72
12
123
31
15
27
26
1.95
39430269--39430425
54
2.9
54
83
4
208
31
15
27
25
1.95
39430347--39430450
28
3.7
27
77
10
86
31
20
24
24
1.98
39430265--39430442
56
3.2
55
82
6
227
30
16
26
25
1.97
39432457--39432571
44
2.6
43
76
12
101
26
25
18
30
1.98
39438536--39438562
13
2.1
13
100
0
54
7
25
44
22
1.79
39441516--39441642
55
2.3
55
78
8
132
26
28
27
17
1.98
39448825--39449213
195
2.0
193
94
1
688
33
23
21
22
1.98
39450414--39450514
23
4.2
24
79
9
82
28
21
22
26
1.99
39450454--39450559
47
2.3
46
83
4
124
35
20
22
20
1.96
39450472--39450559
23
3.8
23
86
3
122
36
21
22
19
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39450472--39450585
46
2.4
47
81
4
115
38
21
20
19
1.93
39457601--39457647
23
2.0
23
100
0
94
42
4
8
44
1.54
39458696--39458730
14
2.5
14
100
0
70
48
0
8
42
1.33
39460855--39460902
25
2.0
25
87
4
71
37
4
10
47
1.57
39482365--39482416
24
2.2
24
89
0
77
36
3
9
50
1.54
39482566--39482602
5
7.6
5
96
3
67
18
0
0
81
0.70
39490739--39490799
30
2.0
30
83
0
77
31
22
8
37
1.84
39497935--39497986
27
2.0
26
84
3
68
17
26
21
34
1.95
39498002--39498065
33
2.0
32
84
3
83
20
21
20
37
1.94
39498027--39498086
27
2.3
26
85
2
75
21
23
20
35
1.96
39505488--39505547
27
2.3
26
82
2
66
21
21
20
36
1.95
39506292--39506412
46
2.6
46
93
0
206
33
27
17
22
1.96
39518485--39518545
26
2.3
26
83
13
79
54
16
3
26
1.58
39519511--39519586
22
3.7
21
76
15
68
40
17
6
35
1.75
39519540--39519637
35
2.7
37
87
12
150
35
16
10
37
1.82
39519547--39519637
19
4.9
19
92
8
161
36
15
10
37
1.83
39521282--39521324
15
2.8
16
89
7
70
53
11
0
34
1.37
39521426--39521472
18
2.6
18
76
6
51
2
40
0
57
1.11
39521529--39521560
2
16.0
2
100
0
64
50
0
0
50
1.00
39521705--39521752
20
2.3
21
89
3
71
47
4
0
47
1.21
39522133--39522175
14
3.0
14
80
16
52
51
2
0
46
1.13
39527138--39527180
15
2.8
16
89
7
70
53
11
0
34
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39527419--39527465
18
2.6
18
76
6
51
2
40
0
57
1.11
39527474--39527505
15
2.1
16
94
5
57
0
21
6
71
1.07
39527688--39527735
20
2.3
21
89
3
71
47
4
0
47
1.21
39527952--39527976
9
2.8
9
100
0
50
20
0
0
80
0.72
39528117--39528159
14
3.0
14
80
16
52
51
2
0
46
1.13
39528597--39528675
3
26.0
3
76
21
76
68
0
1
30
0.98
39528599--39528675
7
11.0
7
78
15
88
68
0
1
29
0.97
39528597--39528675
28
2.8
28
84
9
108
68
0
1
30
0.98
39528599--39528684
35
2.5
35
86
5
120
67
0
1
31
0.98
39528597--39528684
28
3.2
27
78
13
90
67
0
1
31
0.99
39528600--39528696
35
2.8
36
85
3
108
65
1
2
30
1.10
39528765--39528820
27
2.1
27
87
6
80
66
0
1
32
1.03
39533908--39534691
47
16.6
46
92
2
1066
28
29
9
32
1.88
39536139--39536257
56
2.1
55
96
1
220
22
22
9
45
1.81
39537502--39537818
40
7.9
40
93
0
481
26
27
21
24
1.99
39537502--39537856
120
3.0
120
88
1
498
25
27
21
24
1.99
39537793--39537883
39
2.3
40
88
3
130
24
27
21
26
1.99
39537515--39537898
120
3.2
120
86
2
398
26
27
21
25
1.99
39540216--39540937
47
15.6
47
93
4
1062
28
29
9
32
1.88
39540216--39540937
367
2.0
361
85
7
994
28
29
9
32
1.88
39542383--39542502
56
2.1
56
98
0
231
22
23
9
45
1.81
39546618--39546756
21
6.6
21
76
2
145
17
20
15
46
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39546622--39546739
42
2.8
42
86
0
164
18
19
14
47
1.82
39552506--39552712
71
2.9
71
97
0
387
32
23
21
22
1.98
39557194--39557261
34
2.0
34
85
5
93
22
25
22
30
1.99
39563743--39563930
21
9.0
21
78
2
153
18
20
14
46
1.83
39563743--39563930
42
4.5
42
85
2
234
18
20
14
46
1.83
39566308--39566529
40
5.6
40
86
5
281
24
21
28
25
1.99
39574412--39574634
40
5.6
40
85
5
283
24
21
28
25
1.99
39574417--39574667
119
2.1
119
81
7
278
26
20
27
25
1.99
39584668--39584785
23
5.0
24
79
3
132
37
19
21
22
1.95
39584668--39584787
47
2.6
47
81
2
152
37
19
20
22
1.94
39595240--39595269
14
2.1
14
93
0
51
36
6
10
46
1.64
39595290--39595326
15
2.5
16
87
12
53
21
24
10
43
1.84
39595290--39595339
15
3.5
15
79
15
52
22
24
12
42
1.87
39603378--39603857
205
2.3
205
88
3
687
31
17
22
28
1.96
39606151--39606201
24
2.0
26
85
7
70
31
5
5
56
1.47
39609555--39609599
22
2.0
22
91
0
72
24
37
17
20
1.93
39613434--39613489
7
9.0
6
77
18
53
32
0
3
64
1.11
39613397--39613475
27
3.0
26
76
12
79
36
2
1
59
1.19
39613430--39613491
20
3.5
17
79
16
56
32
0
3
64
1.09
39613432--39613482
25
2.0
27
92
7
88
33
0
1
64
1.05
39613429--39613636
21
10.1
21
67
17
100
30
3
3
62
1.27
39613875--39613909
16
2.2
16
94
0
61
22
0
5
71
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39614067--39614098
2
16.0
2
93
0
55
46
0
0
53
1.00
39615878--39615945
31
2.2
31
82
12
77
36
16
32
14
1.89
39616144--39616194
26
2.0
26
88
3
77
31
0
1
66
1.03
39632868--39632994
28
4.5
28
86
3
164
29
11
25
33
1.91
39632867--39632994
57
2.2
57
86
2
177
29
11
25
33
1.91
39639355--39639505
27
5.6
27
81
7
171
29
28
15
26
1.96
39648075--39648223
27
5.5
27
82
8
151
29
28
15
26
1.96
39663649--39663701
21
2.5
21
84
0
70
49
26
0
24
1.51
39666922--39666988
33
2.0
33
100
0
134
29
20
29
19
1.97
39679480--39679533
26
2.1
26
100
0
108
55
29
0
14
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325