genome.fa.s5.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  98  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31997791--31997856	14	4.7	13	76	14	60	19	0	31	48	1.49
31997814--31997872	28	2.1	28	84	6	75	23	0	23	52	1.47
31997898--31997924	14	1.9	14	100	0	54	14	0	44	40	1.46
31998204--31998270	7	9.6	7	75	4	64	14	2	38	43	1.61
31998356--31998405	21	2.4	21	75	0	55	20	2	34	44	1.63
32002728--32002855	9	13.6	9	73	9	103	47	20	0	31	1.56
32002728--32002822	39	2.5	39	84	5	133	48	18	0	32	1.49
32002739--32002831	48	1.9	48	84	0	123	46	21	0	32	1.52
32008719--32008831	43	2.6	43	84	8	167	23	18	26	30	1.98
32008719--32008869	43	3.5	40	80	14	126	25	17	24	31	1.97
32012670--32013002	131	2.6	131	85	4	417	35	19	17	27	1.94
32015209--32016030	87	9.3	89	83	2	669	24	23	18	33	1.97
32015216--32016030	174	4.6	176	80	6	755	24	23	18	33	1.97
32015578--32015973	44	9.1	45	63	14	159	23	23	18	34	1.96
32015230--32016027	262	3.0	261	81	6	806	23	24	18	33	1.97
32016096--32016219	64	1.9	64	91	0	203	37	16	17	28	1.92
32027585--32027896	131	2.4	128	81	7	348	35	20	16	26	1.94
32027664--32027917	131	1.9	131	87	3	368	36	18	15	29	1.92
32031488--32031717	108	2.1	108	80	4	250	40	14	15	29	1.87
32031460--32031717	54	4.8	53	78	7	225	40	15	15	29	1.87
32031855--32031885	12	2.5	13	94	5	55	58	0	12	29	1.35
32032244--32032276	16	2.0	17	88	5	50	45	0	6	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32032310--32032371	23	2.7	23	80	2	72	45	1	1	51	1.20
32038423--32038469	21	2.2	22	92	3	78	21	19	38	21	1.94
32043781--32043852	34	2.1	34	84	5	92	25	9	15	50	1.74
32047574--32047644	35	2.0	35	97	0	133	39	25	7	28	1.82
32050935--32050986	22	2.3	23	77	12	54	46	40	3	9	1.55
32052301--32052339	3	13.0	3	100	0	78	33	0	0	66	0.92
32063900--32063933	5	6.4	5	93	6	50	76	0	0	23	0.79
32064823--32065061	44	5.3	43	72	16	164	36	22	23	17	1.95
32070693--32070867	86	2.0	87	90	3	273	29	30	15	25	1.96
32073253--32073309	25	2.4	23	85	8	71	66	0	5	28	1.13
32073350--32073393	3	13.7	3	81	13	52	65	0	4	29	1.12
32073335--32073393	17	3.6	17	84	10	70	66	0	8	25	1.20
32073455--32073845	3	131.7	3	70	13	197	62	1	7	28	1.33
32074527--32074553	11	2.5	11	100	0	54	7	14	7	70	1.32
32091400--32091588	96	2.0	96	98	0	369	30	19	24	25	1.98
32092229--32092308	19	4.4	18	85	13	103	35	11	16	37	1.84
32092239--32092328	19	4.7	19	86	9	112	33	12	15	38	1.85
32092229--32092315	36	2.4	35	80	16	115	35	10	17	36	1.84
32095937--32095966	14	2.1	14	93	0	51	40	16	13	30	1.87
32103756--32103996	43	5.6	43	93	0	410	12	25	32	29	1.92
32107620--32107649	14	2.1	14	93	0	51	40	16	13	30	1.87
32110596--32110630	14	2.6	14	90	4	54	37	2	14	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32111332--32111545	43	5.0	43	80	7	179	26	16	24	32	1.96
32111353--32111545	86	2.2	86	82	0	233	25	17	24	33	1.96
32111394--32111546	43	3.6	43	83	3	191	22	18	26	32	1.97
32111436--32111586	43	3.6	43	80	9	141	23	20	23	33	1.97
32119829--32119879	18	2.8	18	74	14	50	66	5	3	23	1.30
32120273--32120341	35	2.0	35	100	0	138	43	13	8	34	1.74
32121786--32121836	22	2.3	22	83	10	59	13	1	7	76	1.09
32121799--32121830	16	2.0	16	93	0	55	9	0	9	81	0.88
32123335--32123369	18	1.9	18	94	0	61	48	0	8	42	1.33
32123504--32123573	3	24.0	3	78	11	74	60	1	5	32	1.29
32123514--32123573	25	2.4	24	83	10	77	61	1	5	31	1.27
32123504--32123572	19	3.4	19	83	16	86	59	1	5	33	1.30
32123597--32123670	27	2.6	27	85	14	87	59	2	5	32	1.34
32123616--32123699	12	6.4	13	70	18	50	61	1	3	33	1.20
32123664--32123690	6	4.5	6	100	0	54	66	0	0	33	0.92
32123666--32123720	14	4.0	14	84	9	51	63	0	7	29	1.21
32124583--32124615	3	11.0	3	100	0	66	66	0	0	33	0.92
32125373--32125623	133	1.9	135	80	6	296	26	22	19	30	1.98
32125347--32125801	223	2.0	224	88	1	671	27	21	19	31	1.97
32125372--32125855	179	2.7	178	81	7	504	27	21	19	32	1.97
32125373--32125844	89	5.3	88	75	12	301	27	21	19	31	1.98
32125465--32125811	89	3.9	90	77	8	334	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32125310--32126078	44	17.2	44	70	8	338	27	20	19	32	1.97
32126472--32126620	46	3.2	46	84	2	201	22	24	16	35	1.95
32127489--32127545	18	3.3	16	79	15	69	3	14	0	82	0.80
32132878--32132912	18	1.9	18	94	0	61	48	0	8	42	1.33
32133047--32133113	3	22.0	3	80	11	66	59	1	7	31	1.34
32133056--32133113	22	2.6	22	83	8	82	60	1	8	29	1.36
32133049--32133113	25	2.5	26	80	16	73	60	1	7	30	1.34
32133047--32133180	28	4.8	26	69	18	76	58	3	8	29	1.46
32133156--32133196	15	2.7	16	81	7	50	60	0	4	34	1.18
32133127--32133213	29	2.9	28	78	18	79	57	3	6	32	1.42
32133193--32133240	20	2.4	20	82	0	51	62	2	2	33	1.18
32133193--32133247	14	4.0	14	81	11	51	61	1	3	32	1.24
32133215--32133257	14	3.0	14	83	6	50	62	0	9	27	1.25
32141282--32141494	70	3.0	70	85	1	266	24	22	22	30	1.99
32141316--32141421	36	3.0	36	67	20	105	20	21	27	30	1.98
32145934--32145975	18	2.3	19	95	4	77	45	4	0	50	1.23
32152565--32152598	18	1.9	17	88	5	50	76	0	2	20	0.92
32155606--32155655	22	2.2	23	82	10	59	40	14	2	44	1.56
32155817--32155849	15	2.3	15	89	5	50	30	24	3	42	1.70
32156805--32156840	12	3.0	12	91	0	54	86	0	13	0	0.58
32156899--32156958	28	2.1	28	81	0	66	40	5	6	48	1.51
32160230--32160487	41	6.3	41	92	0	426	29	19	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32160230--32160481	82	3.1	82	100	0	504	28	19	28	23	1.98
32167233--32167269	19	1.9	19	94	0	65	35	0	18	45	1.50
32167482--32167739	41	6.3	41	91	0	417	29	19	27	23	1.98
32167482--32167733	82	3.1	82	98	0	495	29	19	28	23	1.98
32171119--32171280	41	3.9	39	85	7	171	33	20	23	21	1.97
32171583--32171618	15	2.5	15	90	4	56	22	0	33	44	1.53
32171835--32171885	22	2.4	22	83	9	70	27	1	21	49	1.60
32171442--32171962	282	1.9	281	86	4	755	32	2	21	43	1.67
32172261--32172306	6	7.2	6	85	9	56	78	2	0	19	0.86
32172267--32172308	13	3.4	12	81	15	50	78	2	0	19	0.86
32172267--32172306	19	2.1	19	95	0	71	80	2	0	17	0.83
32175147--32175254	26	4.2	26	96	0	198	31	6	25	36	1.82
32180103--32180240	43	3.2	43	84	6	190	23	18	28	28	1.98
32195699--32195882	40	4.6	40	85	2	244	26	23	25	25	2.00
32196145--32196188	22	2.0	22	82	8	54	31	11	13	43	1.80
32198322--32198520	68	3.0	64	80	7	175	25	30	15	29	1.96
32200386--32200438	26	2.0	26	92	0	88	30	16	20	32	1.95
32202159--32202226	34	2.0	34	85	0	91	22	25	20	32	1.98
32205204--32205491	85	3.4	85	77	4	224	32	27	16	23	1.96
32205204--32205491	43	6.8	42	78	5	231	32	27	16	23	1.96
32205204--32205448	85	2.9	85	80	1	240	32	28	16	22	1.96
32206117--32206992	23	38.2	23	73	9	440	38	22	5	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32206386--32206947	160	3.5	160	94	0	937	37	23	4	33	1.77
32206129--32207013	46	19.3	46	72	11	516	38	22	5	33	1.76
32209608--32209647	19	2.1	19	90	0	62	22	0	35	42	1.54
32210539--32210595	7	8.3	7	75	11	55	33	45	0	21	1.52
32210530--32210598	21	3.3	21	78	11	70	34	43	0	21	1.53
32210593--32210709	7	16.4	7	68	10	58	47	28	0	23	1.57
32210593--32210709	14	8.2	14	75	7	65	47	28	0	23	1.57
32211015--32211119	40	2.6	40	78	3	104	25	22	19	32	1.97
32211167--32211295	40	3.2	40	82	2	125	27	20	20	31	1.97
32216595--32216746	43	3.5	43	75	15	143	26	18	23	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325