genome.fa.s5.2.7.7.80.10.50.1000.305.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  305  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96849809--96849921	24	4.8	23	78	13	104	36	0	4	58	1.24
96849833--96849921	25	3.7	24	79	14	112	34	0	4	60	1.17
96849809--96849918	22	4.7	22	78	12	96	36	0	4	58	1.25
96849913--96849976	23	2.8	23	79	11	62	37	4	4	53	1.43
96850029--96850124	25	3.8	24	79	12	86	35	6	5	53	1.49
96849832--96850513	203	3.3	193	77	14	604	34	4	6	55	1.44
96850022--96850182	88	1.8	87	84	9	220	35	4	5	54	1.46
96849913--96850124	24	8.9	23	67	15	87	35	5	6	53	1.48
96850224--96850323	23	4.2	23	73	19	73	29	4	9	58	1.47
96850239--96850326	47	1.9	46	86	13	128	29	3	6	60	1.39
96850449--96850513	24	2.8	23	81	4	76	38	6	4	50	1.48
96850465--96850510	23	2.0	24	86	4	67	36	6	4	52	1.47
96850837--96850891	18	3.1	17	82	15	58	34	3	1	60	1.25
96852813--96852851	20	2.0	20	90	10	62	56	5	2	35	1.35
96852800--96852890	21	4.2	20	72	17	67	57	4	4	34	1.39
96853371--96853449	24	3.2	24	73	16	65	56	5	5	32	1.43
96853570--96853611	11	4.0	11	78	12	52	57	7	0	35	1.26
96853693--96853732	21	1.9	21	89	0	62	52	5	10	32	1.56
96864340--96864392	26	2.0	27	85	7	74	24	13	22	39	1.90
96865847--96865954	26	4.2	26	92	0	180	35	23	8	33	1.85
96868310--96868343	17	2.0	17	88	0	50	47	0	0	52	1.00
96875070--96875103	17	2.0	17	88	0	50	47	2	0	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96897187--96897240	27	2.0	27	100	0	108	29	11	22	37	1.89
96897195--96897253	27	2.2	27	84	6	75	32	8	20	38	1.83
96904265--96904416	40	4.0	40	79	14	196	32	2	14	50	1.57
96904321--96904391	31	2.2	32	92	2	117	32	2	14	50	1.57
96910717--96910750	3	11.3	3	100	0	68	0	35	0	64	0.94
96913308--96913495	48	3.9	48	87	1	261	19	19	27	33	1.96
96918024--96918103	28	2.9	28	71	14	92	40	17	15	27	1.89
96918621--96918661	18	2.3	18	100	0	82	48	17	12	21	1.79
96934886--96934975	47	1.9	47	81	4	110	34	7	21	36	1.82
96935630--96935736	52	2.0	53	98	1	207	58	1	7	31	1.36
96937649--96937725	38	2.0	38	94	0	136	38	18	12	29	1.88
96939178--96939241	31	2.1	31	88	2	94	59	12	3	25	1.48
96939270--96939318	22	2.2	22	81	0	62	61	10	10	18	1.55
96939278--96939317	11	3.6	11	79	0	53	57	10	12	20	1.63
96939270--96939326	22	2.6	21	75	10	60	63	8	12	15	1.52
96940509--96940552	22	1.9	24	86	9	65	38	15	2	43	1.60
96945831--96945933	51	2.0	52	92	5	172	32	13	18	35	1.90
96947841--96947887	22	2.1	22	100	0	94	46	8	8	36	1.65
96954944--96954980	16	2.2	18	85	9	51	48	2	2	45	1.30
96962196--96962220	2	12.5	2	100	0	50	52	48	0	0	1.00
96970510--96970551	20	2.1	20	100	0	84	23	0	30	45	1.53
96970553--96970578	7	3.7	7	100	0	52	15	0	30	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96973673--96973709	15	2.3	17	86	9	51	24	2	5	67	1.25
96995315--96995497	40	4.3	44	72	14	111	29	26	17	26	1.97
96997058--96997119	25	2.4	25	72	2	61	41	3	17	37	1.66
96999364--96999389	10	2.6	10	100	0	52	30	7	0	61	1.24
97001543--97001643	50	2.0	50	96	0	184	29	15	14	39	1.88
97002058--97002106	19	2.6	19	78	9	55	6	14	0	79	0.91
97018238--97018312	9	8.3	9	76	5	53	29	0	42	28	1.56
97018246--97018312	15	4.3	15	76	10	62	26	0	44	28	1.54
97021038--97021071	11	2.8	12	91	8	52	50	0	0	50	1.00
97021038--97021074	12	3.0	13	84	11	51	51	0	0	48	1.00
97021920--97021959	18	2.2	18	86	0	53	85	2	0	12	0.71
97028931--97029082	52	2.9	51	76	12	155	24	16	27	31	1.96
97038722--97038841	39	3.1	39	92	0	186	25	28	19	27	1.98
97040121--97040161	21	2.0	21	90	9	66	34	24	2	39	1.69
97042580--97042613	14	2.4	14	90	0	50	44	2	2	50	1.32
97054857--97054895	18	2.2	17	86	4	51	35	2	2	58	1.25
97055918--97055964	21	2.3	21	89	7	71	63	2	4	29	1.25
97055918--97055967	10	5.0	10	83	9	66	66	2	4	28	1.21
97058546--97058661	53	2.1	56	82	6	141	28	12	26	31	1.93
97058546--97058922	48	8.0	48	81	8	345	27	13	27	31	1.94
97058795--97058922	42	3.0	42	87	3	159	30	12	27	29	1.93
97064230--97064344	27	4.3	26	87	5	149	36	23	23	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97064230--97064344	54	2.1	54	88	3	169	36	23	23	16	1.94
97065948--97066057	26	4.2	26	92	2	168	35	24	4	35	1.76
97066435--97066484	19	2.5	20	84	12	59	42	0	2	56	1.11
97067670--97067695	13	2.0	13	100	0	52	76	0	0	23	0.78
97071209--97071243	16	2.2	16	90	5	54	45	8	0	45	1.34
97071401--97071473	9	7.9	9	74	17	69	31	2	2	63	1.23
97072714--97072754	13	3.1	14	75	13	50	58	0	0	41	0.98
97073269--97073329	29	2.1	29	82	11	72	55	3	0	40	1.16
97082753--97082783	3	10.3	3	100	0	62	67	0	0	32	0.91
97090386--97090437	22	2.3	22	78	15	52	59	3	3	32	1.33
97104116--97104674	88	6.4	89	76	4	501	26	16	26	30	1.97
97104114--97104649	131	4.1	132	94	0	914	27	16	26	29	1.97
97104684--97104917	95	2.4	96	92	1	389	29	19	21	28	1.98
97107769--97107834	28	2.3	28	97	2	123	56	12	3	28	1.51
97107857--97107887	16	1.9	16	93	0	53	58	0	0	41	0.98
97108480--97108530	18	2.7	20	78	9	61	17	3	3	74	1.12
97112541--97112583	20	2.2	20	84	12	54	60	0	2	37	1.10
97115665--97115729	31	2.2	30	86	5	87	50	15	1	32	1.53
97118531--97118602	36	2.0	36	100	0	144	33	11	16	38	1.84
97126067--97126096	15	1.9	16	93	6	53	20	0	3	76	0.92
97126069--97126125	8	7.5	8	78	9	50	31	1	1	64	1.13
97126086--97126130	16	3.1	15	84	12	58	37	4	0	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97126094--97126145	24	2.2	24	83	13	63	44	5	1	48	1.38
97131052--97131098	22	2.2	21	81	11	51	21	2	17	59	1.47
97131472--97131515	20	2.2	20	87	0	61	70	2	6	20	1.21
97141074--97141129	14	4.1	14	76	2	51	53	0	5	41	1.24
97144302--97144381	42	2.0	41	83	11	103	36	1	2	60	1.18
97144316--97144387	20	3.5	20	78	15	76	38	1	1	58	1.15
97147458--97147933	131	3.6	131	80	3	467	28	18	18	34	1.94
97148849--97148919	35	2.0	35	88	0	106	28	23	11	36	1.89
97150954--97151029	29	2.9	26	71	27	70	46	0	2	51	1.15
97156750--97156791	16	2.7	15	85	10	57	33	2	16	47	1.60
97156765--97156939	46	3.8	46	93	0	287	34	3	14	48	1.61
97156815--97157017	16	13.0	16	72	13	111	34	2	14	48	1.58
97156873--97156978	30	3.4	30	71	19	99	35	3	13	47	1.61
97156857--97157011	64	2.5	61	89	5	238	34	2	14	48	1.57
97157477--97157502	13	2.0	13	100	0	52	69	0	0	30	0.89
97157990--97158042	23	2.2	23	83	6	61	50	1	3	43	1.30
97158277--97158352	25	3.0	25	82	3	91	31	17	42	9	1.80
97159426--97160472	345	3.0	345	95	1	1833	37	17	11	33	1.86
97161862--97161923	7	8.3	7	75	18	54	43	35	0	20	1.53
97161859--97161922	22	2.9	22	77	13	69	42	35	0	21	1.54
97161863--97161922	15	3.9	15	76	10	68	41	36	0	21	1.54
97162227--97162296	21	3.7	20	67	23	60	22	2	25	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97162211--97162294	36	2.3	36	91	6	134	22	2	27	47	1.63
97162544--97162929	82	4.7	82	83	4	469	25	16	20	37	1.93
97162544--97162926	41	9.4	41	79	6	386	26	16	20	36	1.93
97162544--97162928	163	2.3	163	85	5	483	25	16	20	36	1.94
97169264--97169315	9	5.3	9	80	8	50	63	1	0	34	1.06
97169899--97169958	16	3.5	16	80	14	66	58	1	1	38	1.18
97169899--97169943	9	5.1	9	82	17	51	57	0	0	42	0.98
97169899--97169964	18	3.8	16	79	18	62	57	1	1	39	1.17
97170608--97170691	32	2.8	32	76	8	86	51	7	11	29	1.65
97171752--97171902	80	1.9	81	97	1	286	45	5	5	43	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325