Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  293  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93466198--93466359
54
3.0
54
88
4
222
35
20
24
19
1.96
93467954--93468061
26
4.2
26
93
0
189
36
25
7
30
1.84
93476777--93476938
27
6.2
26
85
9
195
16
25
23
35
1.95
93476777--93476938
54
3.1
53
89
6
233
16
25
23
35
1.95
93484555--93484724
92
1.8
93
89
2
272
28
29
20
21
1.98
93484548--93484721
46
3.8
46
74
15
171
29
29
20
21
1.98
93485889--93485957
35
1.9
37
91
5
115
49
14
0
36
1.44
93533547--93533718
93
1.8
93
96
0
317
27
29
21
20
1.98
93533540--93533715
46
3.8
46
79
12
216
28
29
21
20
1.98
93541080--93541251
93
1.8
93
96
0
317
27
29
21
20
1.98
93541073--93541248
46
3.8
46
79
12
216
28
29
21
20
1.98
93548435--93548585
53
2.8
53
89
4
214
29
27
16
25
1.97
93550165--93550191
9
3.0
9
100
0
54
44
11
0
44
1.39
93552720--93552803
42
2.0
41
84
6
107
28
16
25
29
1.97
93555571--93555759
50
3.8
50
83
1
227
29
25
18
25
1.98
93560722--93560758
5
7.6
5
82
17
51
16
0
0
83
0.64
93575240--93575272
6
5.5
6
100
0
66
51
15
0
33
1.43
93583032--93583093
9
6.8
9
88
1
88
58
20
0
20
1.40
93583144--93583230
34
2.6
34
77
3
86
40
13
8
37
1.75
93584509--93584540
13
2.5
13
94
0
55
43
6
6
43
1.54
93584841--93584888
24
2.0
24
100
0
96
41
8
8
41
1.65
93585328--93585366
6
6.3
6
85
5
51
23
0
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93585376--93585419
22
2.0
22
86
0
61
52
0
0
47
1.00
93585439--93585480
13
2.9
14
80
13
50
54
0
0
45
0.99
93585443--93585479
16
2.3
16
86
13
58
59
0
0
40
0.97
93585513--93585561
19
2.6
19
83
3
64
55
0
0
44
0.99
93585512--93585566
15
3.4
16
75
20
60
54
0
0
45
0.99
93587054--93587127
29
2.5
29
82
4
85
24
12
16
47
1.80
93600617--93600750
45
3.0
43
78
10
146
34
19
19
26
1.96
93600614--93600740
44
2.9
44
81
8
141
33
19
19
27
1.96
93600764--93600901
44
3.1
43
76
7
143
30
18
19
31
1.96
93601346--93601384
17
2.3
17
81
0
51
53
33
2
10
1.48
93609516--93609562
16
2.9
16
75
12
51
21
12
0
65
1.25
93609549--93609574
13
2.0
13
100
0
52
7
7
0
84
0.77
93610256--93610575
168
1.9
167
82
4
394
36
14
9
40
1.78
93610628--93610668
18
2.4
18
80
8
50
19
4
2
73
1.13
93610848--93610874
14
1.9
14
100
0
54
29
7
3
59
1.42
93611404--93611438
8
4.2
8
88
3
52
71
0
5
22
1.07
93613405--93613430
13
2.0
13
100
0
52
38
0
15
46
1.46
93616175--93616440
3
89.3
3
69
11
136
30
7
1
60
1.30
93616277--93616318
14
3.0
14
82
6
50
33
4
0
61
1.17
93616592--93616841
3
82.7
3
74
7
202
30
8
1
60
1.33
93623552--93623677
64
2.0
64
87
3
182
28
17
15
38
1.91
93623730--93624124
88
4.5
88
85
1
524
34
21
21
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93623730--93624125
175
2.3
176
85
2
528
35
20
21
22
1.96
93624122--93624716
88
6.8
88
91
0
913
28
24
20
26
1.99
93624264--93624669
44
9.2
44
68
18
245
28
24
20
25
1.99
93626323--93626577
3
85.3
3
67
12
96
30
7
1
61
1.31
93626411--93626452
14
3.0
14
82
6
50
33
4
0
61
1.17
93626725--93626967
3
80.7
3
74
7
197
31
8
0
59
1.33
93630889--93630945
14
4.2
13
77
16
53
52
36
1
8
1.43
93631384--93631433
26
2.0
24
88
7
73
64
6
0
30
1.18
93631404--93631462
21
2.8
21
78
12
59
69
8
0
22
1.15
93632537--93632597
12
5.0
12
72
9
52
42
1
1
54
1.20
93634267--93634301
4
9.0
4
87
6
54
22
0
0
77
0.78
93639890--93639982
18
5.2
18
85
0
132
29
23
15
32
1.95
93645390--93645429
21
1.9
21
85
10
55
42
0
2
55
1.13
93652005--93652040
15
2.4
15
95
0
63
66
8
25
0
1.19
93652012--93652042
9
3.4
9
95
0
53
67
6
25
0
1.14
93652041--93652069
3
9.7
3
100
0
58
34
0
34
31
1.58
93654289--93654338
23
2.2
22
89
10
75
38
2
0
60
1.09
93656120--93656211
21
4.6
20
76
11
73
39
0
3
57
1.15
93656478--93656519
22
2.0
21
85
4
57
35
0
7
57
1.26
93661561--93661597
18
2.0
20
84
10
51
43
0
8
48
1.32
93661768--93661825
27
2.2
26
93
3
98
65
10
5
18
1.41
93672688--93673335
177
3.7
177
91
2
984
29
18
22
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93673251--93673380
43
3.0
44
92
4
201
27
17
23
31
1.97
93673480--93673602
45
2.7
45
87
5
185
30
18
22
28
1.98
93673083--93674054
222
4.4
221
88
2
1344
29
18
23
29
1.98
93673702--93673813
45
2.5
45
91
2
172
29
17
21
31
1.96
93673924--93674046
45
2.7
45
88
0
174
28
17
22
30
1.97
93677659--93677830
93
1.8
93
88
0
263
27
29
20
22
1.98
93677651--93677826
46
3.8
46
77
7
185
28
28
19
22
1.98
93684573--93684616
22
2.1
21
84
12
56
29
2
2
65
1.16
93691378--93691455
30
2.5
31
74
12
81
62
3
5
28
1.34
93691880--93691927
13
3.4
14
77
16
55
68
2
2
27
1.11
93691945--93691992
22
2.1
23
84
3
62
64
0
6
29
1.18
93693260--93693356
46
2.1
46
84
0
122
24
22
19
32
1.97
93693316--93693673
135
2.7
135
87
0
495
25
22
22
29
1.99
93693570--93693665
43
2.2
43
81
9
104
28
26
17
28
1.98
93700886--93700980
43
2.2
42
92
5
156
23
29
25
22
1.99
93706030--93706087
21
2.7
21
78
5
62
36
36
0
27
1.57
93706075--93706128
21
2.7
20
75
11
56
37
44
0
18
1.50
93706193--93706277
21
3.9
21
73
11
80
47
23
1
28
1.59
93706177--93706270
46
2.0
46
89
4
145
44
22
2
30
1.64
93706442--93706621
41
4.4
40
87
2
198
17
21
20
40
1.91
93706460--93706641
41
4.4
41
86
3
188
19
21
21
37
1.94
93706675--93706712
12
3.2
12
92
0
67
47
31
13
7
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93707386--93707430
21
2.1
21
91
0
72
15
24
22
37
1.93
93712044--93712117
13
5.3
14
75
23
59
67
0
4
28
1.09
93712080--93712117
13
3.0
13
92
3
60
68
0
0
31
0.90
93712042--93712117
12
6.8
11
73
21
61
68
0
3
27
1.07
93712049--93712111
33
1.9
32
90
3
99
66
0
4
28
1.12
93716325--93716366
19
2.2
20
91
4
68
54
0
4
40
1.21
93719701--93719757
24
2.3
24
81
3
69
59
5
5
29
1.41
93719672--93719768
24
3.9
24
72
9
68
58
4
6
30
1.41
93719762--93719844
30
2.7
31
80
9
82
59
1
4
34
1.27
93719856--93719898
22
2.0
21
91
8
70
62
2
9
25
1.37
93719944--93720062
26
4.5
26
72
9
98
57
1
10
31
1.42
93720037--93720079
17
2.6
16
79
17
52
58
0
6
34
1.25
93720018--93720157
42
3.1
42
73
16
109
60
2
6
30
1.36
93728382--93728436
12
4.6
12
81
4
58
12
21
1
63
1.38
93729464--93729492
12
2.4
12
100
0
58
13
0
6
79
0.93
93736445--93736491
13
3.5
13
77
11
58
57
2
0
40
1.11
93736442--93736500
28
2.3
24
76
20
73
55
3
0
40
1.16
93736608--93736645
14
2.7
14
91
0
58
44
7
0
47
1.32
93739128--93739171
21
2.0
23
86
13
65
43
6
9
40
1.63
93741221--93741253
7
4.7
7
100
0
66
15
0
0
84
0.61
93741315--93741372
23
2.5
24
91
8
93
39
5
20
34
1.75
93744435--93744485
24
2.1
25
89
10
79
33
0
5
60
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93749240--93749279
6
6.5
6
88
5
62
15
2
0
82
0.77
93752906--93752940
4
8.5
4
87
6
52
54
0
0
45
0.99
93752945--93753000
23
2.4
23
76
8
60
53
3
0
42
1.18
93753264--93753301
16
2.4
17
83
16
55
52
5
7
34
1.53
93754527--93754557
16
1.9
16
93
0
53
74
3
0
22
0.96
93759258--93759286
11
2.6
11
100
0
58
37
6
20
34
1.80
93764412--93764452
3
13.7
3
100
0
82
68
0
0
31
0.90
93764552--93764903
3
116.3
3
68
14
127
59
3
8
28
1.44
93764645--93764683
20
2.0
20
89
0
60
53
10
12
23
1.69
93778248--93778574
127
2.6
127
85
7
439
35
21
18
24
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325