genome.fa.s5.2.7.7.80.10.50.1000.285.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  285  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91374264--91374357	27	3.4	27	69	22	79	58	4	4	32	1.37
91374243--91374377	56	2.4	56	96	0	252	53	5	2	37	1.41
91374282--91374368	27	3.2	26	67	23	70	52	6	2	37	1.41
91375448--91375494	7	6.7	7	95	0	85	57	12	0	29	1.36
91376438--91376535	48	2.0	48	88	3	144	59	3	4	33	1.32
91376687--91376725	10	3.9	10	93	0	60	48	0	28	23	1.51
91376688--91376747	22	2.8	22	73	14	54	45	0	28	26	1.54
91376688--91376752	20	3.1	21	79	12	71	43	0	29	27	1.56
91383566--91383606	22	1.9	21	90	5	64	53	9	0	36	1.34
91394891--91394991	51	2.0	51	100	0	202	29	7	11	50	1.67
91401421--91401462	22	2.0	21	90	4	66	54	0	4	40	1.21
91416965--91417006	20	2.0	22	86	9	61	45	0	0	54	0.99
91417013--91417072	27	2.2	27	88	5	86	50	0	0	50	1.00
91417013--91417072	13	4.4	14	89	6	88	50	0	0	50	1.00
91417015--91417073	14	4.3	14	89	6	77	49	0	0	50	1.00
91417051--91417146	49	2.0	48	82	13	117	47	4	0	47	1.21
91419615--91419655	9	4.3	10	81	9	50	4	31	17	46	1.69
91419615--91419655	19	2.2	19	100	0	82	4	31	17	46	1.69
91424587--91424619	13	2.6	13	90	4	50	48	12	0	39	1.40
91427470--91427510	6	6.8	6	94	0	73	82	2	0	14	0.76
91432870--91432902	13	2.6	13	90	4	50	48	12	0	39	1.40
91435370--91435394	7	3.6	7	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91435352--91435429	34	2.3	35	78	12	90	43	0	5	51	1.24
91436698--91436755	18	2.9	20	70	15	57	41	8	12	37	1.73
91436668--91436814	39	3.8	39	85	0	186	38	10	12	38	1.77
91437791--91437847	24	2.4	24	77	14	64	15	26	21	36	1.93
91441185--91441343	43	3.7	43	78	7	162	33	24	17	24	1.96
91443833--91443904	32	2.2	33	76	14	78	48	12	4	34	1.60
91448603--91448686	28	3.2	28	64	25	74	25	16	28	29	1.97
91448555--91448744	50	3.8	49	84	1	227	25	18	26	28	1.98
91451704--91451772	14	4.8	13	73	26	52	11	11	14	62	1.55
91456631--91456704	29	2.6	29	84	4	96	48	20	18	12	1.80
91460023--91460202	40	4.4	41	82	6	206	27	15	26	31	1.96
91460023--91460202	81	2.2	82	82	10	226	27	15	26	31	1.96
91460304--91460328	12	2.1	12	100	0	50	36	16	8	40	1.77
91466599--91466765	35	4.6	35	81	8	183	32	10	23	33	1.89
91466599--91466769	75	2.4	75	83	7	203	32	11	22	33	1.89
91491738--91491813	3	25.3	3	72	10	57	30	9	0	60	1.28
91491879--91491905	9	3.0	9	100	0	54	33	0	0	66	0.92
91491915--91491943	9	3.3	9	90	9	51	17	0	0	82	0.66
91492434--91492684	129	1.9	128	80	6	283	33	17	15	32	1.92
91494521--91494600	3	27.7	3	71	12	51	25	7	3	63	1.37
91504880--91505068	48	3.9	48	78	4	211	26	17	28	28	1.98
91504882--91505068	96	1.9	96	90	0	293	26	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91509108--91509278	75	2.3	76	90	3	274	28	21	21	29	1.98
91509146--91509283	35	3.8	34	73	13	123	26	21	23	28	1.99
91509118--91509250	40	3.5	38	72	16	105	27	22	21	27	1.99
91513713--91513778	17	4.1	16	72	14	55	50	1	1	46	1.20
91514090--91514309	41	5.4	41	88	0	316	36	19	23	20	1.95
91514059--91514309	82	3.1	82	85	2	328	37	19	22	20	1.94
91514383--91514426	21	2.0	22	91	4	72	18	0	38	43	1.50
91514657--91514705	21	2.4	20	82	3	62	32	2	28	36	1.69
91514657--91514697	21	2.0	21	90	0	64	34	2	26	36	1.70
91517673--91518041	183	2.0	183	97	0	693	27	15	14	42	1.86
91518482--91519717	356	3.5	357	98	0	2377	35	14	11	38	1.83
91519927--91519982	15	3.8	15	77	20	64	46	1	0	51	1.11
91520087--91520276	9	20.6	9	74	10	107	47	13	1	37	1.52
91520121--91520276	17	8.9	17	71	11	93	47	12	1	39	1.49
91520060--91520267	96	2.1	96	80	5	231	47	12	1	38	1.52
91525488--91525516	14	2.1	14	93	6	51	34	0	6	58	1.25
91525928--91525989	21	3.0	21	92	0	106	27	20	51	0	1.48
91526363--91526487	43	2.9	43	100	0	250	21	29	21	27	1.99
91527993--91528032	17	2.3	18	86	4	55	67	2	0	30	1.04
91529667--91529691	13	1.9	13	100	0	50	28	8	16	48	1.74
91531315--91531375	28	2.1	27	85	11	77	44	3	0	52	1.17
91533796--91533862	34	1.9	35	88	8	102	44	11	8	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91536278--91536488	3	71.0	3	69	18	97	32	3	2	60	1.29
91536596--91536651	24	2.5	22	80	13	69	25	5	3	66	1.29
91546624--91546712	44	2.0	44	82	6	110	44	13	25	15	1.83
91547494--91547838	78	4.5	77	82	5	412	31	16	20	31	1.94
91547780--91547895	57	2.0	58	81	8	139	31	12	16	39	1.85
91547704--91547957	135	1.9	134	82	5	325	31	14	16	37	1.89
91548861--91548906	19	2.3	19	85	7	56	52	23	13	10	1.71
91549606--91549649	3	14.7	3	81	9	54	34	4	0	61	1.16
91549602--91549658	24	2.3	24	81	3	69	42	3	0	54	1.17
91549672--91549705	8	4.0	8	88	11	50	38	0	2	58	1.13
91549662--91549747	26	3.2	26	77	14	68	36	1	1	61	1.11
91549903--91549968	23	3.0	22	78	10	71	25	1	4	68	1.18
91550642--91550686	21	2.1	21	84	8	56	31	2	0	66	1.04
91551058--91551100	11	4.3	10	80	19	54	74	2	0	23	0.93
91551053--91551109	18	3.1	18	80	9	71	70	3	0	26	1.03
91551202--91551269	31	2.1	32	83	5	84	26	11	13	48	1.76
91556796--91556849	26	2.1	26	92	0	90	55	16	5	22	1.62
91558514--91558542	5	5.8	5	100	0	58	82	0	17	0	0.66
91566953--91566991	15	2.5	15	91	4	60	15	12	15	56	1.68
91568980--91569060	25	3.2	26	62	19	62	27	12	28	32	1.93
91574968--91575016	25	2.0	24	96	4	89	0	6	20	73	1.04
91574968--91575023	14	4.2	14	82	13	82	0	7	21	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91574968--91575042	20	3.8	20	86	10	109	1	8	18	72	1.17
91575470--91575507	17	2.3	16	90	4	58	57	5	31	5	1.43
91580399--91580458	8	7.5	8	85	7	68	65	3	1	30	1.19
91580608--91580672	25	2.8	24	88	6	98	55	6	4	33	1.45
91580699--91580754	25	2.3	25	87	3	78	55	3	5	35	1.40
91580699--91580828	45	2.7	47	75	13	124	56	3	5	35	1.38
91581373--91581493	30	4.0	30	95	0	215	21	3	48	26	1.65
91581343--91581493	60	2.5	60	89	2	187	22	3	47	26	1.66
91582374--91582405	14	2.3	14	94	0	55	65	6	12	15	1.44
91582231--91582580	192	1.8	192	92	2	596	39	18	16	25	1.91
91582511--91582657	75	1.9	77	86	2	208	27	21	22	28	1.99
91582640--91582674	14	2.5	14	95	0	61	57	2	20	20	1.54
91582484--91583119	164	3.9	158	78	13	530	33	20	19	27	1.96
91582563--91582751	91	2.1	91	85	4	247	34	17	19	28	1.94
91582734--91582976	88	2.8	84	85	10	314	35	20	18	26	1.95
91582563--91583052	248	2.0	252	84	4	661	33	19	18	28	1.96
91582904--91583119	75	2.9	76	88	4	314	31	21	17	29	1.96
91583062--91583177	58	2.0	58	86	3	162	31	24	18	26	1.97
91583123--91583415	73	4.0	71	79	9	300	31	20	16	30	1.95
91583123--91583415	71	4.0	72	81	7	329	31	20	16	30	1.95
91602659--91602697	20	1.9	20	84	5	51	7	17	17	56	1.64
91630916--91631105	46	4.1	46	95	0	344	38	12	24	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91631068--91631172	34	3.0	35	71	15	117	37	14	25	22	1.92
91631004--91631214	116	1.8	116	97	0	404	37	13	25	22	1.91
91631050--91631156	36	3.0	36	71	15	123	38	11	26	24	1.89
91631120--91631251	46	2.9	46	90	2	194	42	14	23	19	1.88
91636699--91636734	16	2.2	17	90	5	56	61	25	0	13	1.33
91638018--91638065	23	2.1	23	100	0	96	20	16	8	54	1.68
91638022--91638070	23	2.2	22	92	7	82	20	16	10	53	1.72
91638809--91638848	16	2.5	15	84	8	53	67	2	2	27	1.16
91638783--91638957	24	6.7	25	68	15	86	60	2	1	35	1.22
91638860--91638967	27	4.0	27	76	13	89	62	2	1	32	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325