Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  13  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4851640--4851830
18
10.6
18
78
10
167
35
10
14
39
1.81
4851627--4851829
72
2.8
73
79
10
204
35
10
13
39
1.80
4851837--4851910
36
2.1
36
84
0
94
37
8
14
39
1.76
4851862--4851910
18
2.7
18
77
0
62
38
6
12
42
1.67
4853448--4853479
16
2.0
16
93
0
55
56
12
15
15
1.68
4862978--4863009
5
6.4
5
96
0
55
21
0
0
78
0.76
4863002--4863047
24
2.0
23
83
12
58
45
4
0
50
1.21
4866043--4866102
30
2.0
30
100
0
120
26
6
10
56
1.57
4880261--4880286
13
2.0
13
100
0
52
15
15
15
53
1.73
4884920--4884959
4
9.8
4
89
5
62
27
2
20
50
1.61
4889663--4889699
19
1.9
19
88
0
56
40
0
13
45
1.43
4889888--4889929
13
2.9
14
80
13
50
52
0
0
47
1.00
4889893--4889922
15
1.9
16
93
6
53
60
0
0
40
0.97
4889881--4889928
16
2.9
16
76
14
53
50
0
0
50
1.00
4889961--4890012
15
3.2
15
73
19
50
51
1
0
46
1.12
4889963--4889999
19
1.9
19
88
0
56
45
2
0
51
1.15
4889952--4890056
33
3.1
34
81
10
94
43
9
1
44
1.47
4893648--4893688
20
2.0
21
90
4
66
46
4
2
46
1.37
4903197--4903326
65
2.0
65
100
0
260
40
13
12
33
1.82
4924980--4925021
20
2.1
20
100
0
84
33
19
9
38
1.84
4927890--4927943
26
2.1
26
82
6
65
68
7
0
24
1.15
4927901--4927948
6
7.7
6
88
9
60
68
10
0
20
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4927901--4927948
20
2.5
19
86
6
62
68
10
0
20
1.18
4927988--4928063
9
8.4
9
88
0
116
23
11
25
39
1.89
4927988--4928063
18
4.2
18
94
0
134
23
11
25
39
1.89
4932086--4932238
78
2.0
78
100
0
306
40
16
15
26
1.89
4950676--4950911
121
2.0
121
97
0
445
30
20
18
31
1.96
4957784--4957897
51
2.2
51
92
0
183
34
13
22
29
1.92
4965566--4965679
51
2.2
51
93
0
192
33
13
23
29
1.93
4966933--4967196
49
5.6
49
74
13
200
23
28
20
28
1.99
4967078--4967195
46
2.5
46
85
8
150
26
26
16
31
1.96
4977247--4977308
12
5.3
12
74
12
58
35
0
3
61
1.12
4977554--4977610
24
2.4
23
77
13
62
42
0
3
54
1.17
4977701--4977735
5
7.0
5
100
0
70
40
0
0
60
0.97
4977703--4977748
10
4.8
10
86
10
51
39
0
2
58
1.10
4978596--4978771
70
2.3
76
82
9
193
41
1
19
36
1.62
4978934--4979009
18
4.4
18
73
20
72
40
1
25
32
1.64
4978934--4979015
34
2.4
33
80
13
96
40
1
24
34
1.63
4980894--4980945
22
2.3
22
83
3
59
42
1
3
51
1.31
4994254--4994360
45
2.4
45
85
3
144
40
18
19
21
1.92
4994255--4994375
45
2.5
48
76
14
124
39
19
20
20
1.92
4999597--4999647
16
3.2
16
72
10
50
29
17
3
49
1.65
5013113--5013274
81
2.0
81
96
0
297
26
22
12
38
1.90
5019520--5019681
77
2.1
77
96
0
297
40
22
17
19
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5024445--5024583
61
2.2
61
86
5
181
33
1
7
56
1.37
5035452--5035478
5
5.4
5
100
0
54
40
0
0
59
0.98
5035486--5035524
9
4.2
9
83
6
51
76
2
10
10
1.10
5035546--5035572
14
1.9
14
100
0
54
81
0
14
3
0.82
5035887--5035925
12
3.2
12
81
3
51
56
0
20
23
1.42
5038720--5038910
47
3.9
47
82
5
186
24
17
28
29
1.97
5041660--5041702
22
2.0
22
81
9
52
74
2
9
13
1.16
5042282--5042397
51
2.2
53
84
4
146
17
21
23
37
1.93
5049709--5049742
16
2.1
16
94
0
59
23
8
26
41
1.83
5055225--5055328
27
3.9
27
67
14
72
37
3
4
53
1.40
5059651--5059823
46
3.8
45
79
11
190
20
19
30
28
1.97
5059644--5059816
93
1.9
93
92
2
294
20
20
30
28
1.98
5062322--5062365
3
14.7
3
85
0
52
63
0
4
31
1.14
5062673--5062866
3
65.3
3
72
16
84
61
5
5
28
1.39
5062805--5062867
23
2.7
23
80
4
74
65
3
3
28
1.24
5062673--5062866
20
9.5
20
67
14
83
61
5
5
28
1.39
5064385--5064610
21
11.0
21
74
7
196
16
19
16
46
1.84
5064382--5064610
40
5.6
42
79
5
155
17
19
16
47
1.83
5064399--5064610
61
3.5
61
87
0
298
16
19
16
46
1.84
5067734--5067770
4
8.8
4
88
11
56
72
0
5
21
1.04
5067730--5067781
9
5.8
9
82
15
54
73
0
7
19
1.07
5067734--5067780
13
3.6
13
91
5
69
72
0
8
19
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5067734--5067767
17
1.9
18
94
5
61
70
0
5
23
1.09
5069030--5069076
15
3.1
15
78
0
58
36
4
12
46
1.62
5069716--5069756
19
2.2
19
87
12
59
46
0
24
29
1.53
5075686--5075725
20
2.0
20
95
0
71
35
12
40
12
1.81
5080401--5080425
13
1.9
13
100
0
50
52
16
8
24
1.70
5105120--5105178
30
2.0
30
100
0
118
27
10
16
45
1.80
5109989--5110035
9
5.2
9
81
0
58
2
44
2
51
1.25
5109988--5110038
24
2.1
24
88
0
75
1
47
1
49
1.24
5110041--5110083
12
3.6
12
87
0
59
18
37
11
32
1.87
5110055--5110089
15
2.3
15
95
0
61
14
40
11
34
1.82
5110163--5110202
21
1.9
21
85
10
55
15
32
7
45
1.74
5115242--5115423
89
2.0
90
93
4
312
39
20
10
29
1.86
5120140--5120188
18
2.6
17
78
15
53
46
0
0
53
1.00
5126663--5126695
17
1.9
17
88
11
50
51
0
3
45
1.16
5127931--5127979
24
2.0
24
100
0
98
40
12
16
30
1.85
5144675--5144786
39
2.8
40
73
8
104
30
25
20
23
1.98
5149950--5149989
20
2.0
20
85
4
55
50
2
2
45
1.28
5152577--5152627
16
3.2
16
76
13
61
72
0
9
17
1.11
5152573--5152627
15
3.7
15
76
7
58
72
0
9
18
1.10
5165629--5165681
19
2.8
19
78
13
56
43
18
5
32
1.74
5168031--5168149
47
2.5
47
75
5
114
24
17
24
33
1.96
5171573--5171707
39
3.4
39
72
11
107
28
26
20
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5172823--5172860
5
7.6
5
100
0
76
60
0
0
39
0.97
5177466--5177499
6
5.7
6
100
0
68
0
32
0
67
0.91
5188765--5189041
50
5.5
50
92
0
446
35
15
22
27
1.94
5189021--5189079
31
1.9
31
100
0
118
28
20
25
25
1.99
5189083--5189149
31
2.2
31
83
0
80
26
19
25
28
1.99
5193961--5194287
50
6.5
50
95
0
564
35
15
22
26
1.94
5194267--5194325
31
1.9
31
100
0
118
28
20
25
25
1.99
5194280--5194371
46
2.0
46
89
0
139
26
22
23
27
2.00
5194327--5194395
31
2.2
31
84
0
84
26
20
26
27
1.99
5196405--5196498
39
2.4
39
82
5
111
25
28
22
23
1.99
5202897--5202925
8
3.8
8
95
4
51
41
27
6
24
1.80
5217341--5217414
36
2.1
36
100
0
148
39
10
25
24
1.88
5222652--5222744
39
2.5
37
80
7
98
27
29
22
20
1.98
5223100--5223135
3
12.0
3
87
0
54
61
5
0
33
1.19
5223100--5223135
12
3.0
12
95
0
63
61
5
0
33
1.19
5223789--5223814
11
2.4
11
100
0
52
0
42
7
50
1.31
5224172--5224214
21
2.0
21
81
0
50
58
6
0
34
1.25
5249038--5249230
96
2.0
96
90
0
305
34
15
24
25
1.95
5268752--5268777
4
6.5
4
100
0
52
50
26
0
23
1.50
5272387--5272430
12
3.6
12
81
3
52
25
9
65
0
1.21
5275890--5275929
22
1.9
21
85
10
55
25
15
37
22
1.93
5278311--5278349
21
1.9
19
85
10
51
51
2
5
41
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5278752--5278864
59
1.9
58
96
1
208
39
21
7
30
1.82
5279794--5279826
11
2.9
11
95
4
57
63
0
0
36
0.95
5302919--5302945
6
4.5
6
100
0
54
48
14
18
18
1.82
5327414--5327457
21
2.1
21
100
0
88
50
13
4
31
1.62
5331998--5332027
6
5.0
6
100
0
60
50
0
0
50
1.00
5341581--5341618
17
2.2
18
85
4
51
18
5
21
55
1.62
5344160--5344335
75
2.3
75
87
0
235
30
5
48
16
1.68
5349030--5349083
22
2.5
22
87
6
74
59
1
3
35
1.26
5353946--5354056
47
2.4
47
84
6
154
35
23
16
25
1.95
5354819--5354847
4
7.2
4
100
0
58
0
24
0
75
0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325