Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  144  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45583921--45583963
20
2.2
19
84
12
52
32
2
0
65
1.06
45588930--45589003
25
2.8
26
76
17
71
70
4
1
24
1.13
45591916--45591959
23
1.9
23
100
0
88
27
9
22
40
1.84
45593248--45593276
5
5.8
5
100
0
58
79
20
0
0
0.74
45602069--45602096
3
9.3
3
100
0
56
67
0
0
32
0.91
45602671--45602725
20
2.8
21
73
15
64
25
5
1
67
1.22
45602770--45602890
10
12.2
10
65
14
54
33
3
2
61
1.26
45602709--45602802
30
3.2
29
71
5
73
29
8
3
58
1.43
45602815--45602861
17
2.6
19
80
19
64
25
4
0
70
1.05
45602817--45602891
20
3.9
19
76
11
64
30
4
1
64
1.20
45605004--45605028
12
2.1
12
100
0
50
28
24
0
48
1.52
45606471--45606524
8
8.0
7
76
19
53
27
0
1
70
0.98
45606480--45606544
26
2.5
26
87
2
85
30
0
1
67
1.00
45608424--45608457
16
2.1
17
88
5
52
64
2
2
29
1.22
45609230--45609301
30
2.4
30
86
11
96
36
1
0
62
1.04
45609232--45609316
29
3.0
28
79
19
95
36
1
2
60
1.18
45617324--45617678
176
2.0
176
100
0
710
44
8
16
30
1.77
45620559--45620622
25
2.5
25
85
7
76
31
15
23
29
1.95
45620334--45620622
158
1.8
158
80
5
343
32
14
21
31
1.93
45622950--45623069
28
4.4
28
85
7
158
34
14
25
26
1.94
45623093--45623190
51
1.9
51
91
0
160
33
13
25
27
1.93
45624890--45625039
41
3.7
41
80
1
194
28
27
22
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45632998--45633106
40
2.7
41
73
2
121
28
26
22
22
1.99
45655057--45655101
10
4.5
10
86
5
56
68
2
4
24
1.19
45656358--45656448
8
11.0
8
72
17
62
39
1
0
59
1.05
45656357--45656473
10
12.4
9
72
20
89
41
0
0
57
1.05
45656351--45656475
20
6.6
20
79
11
138
40
0
0
57
1.10
45656397--45656421
12
2.1
12
100
0
50
32
0
0
68
0.90
45656369--45656484
38
3.0
38
87
7
155
40
0
0
58
1.04
45660165--45660253
45
2.0
45
82
4
108
35
1
5
57
1.30
45661626--45661653
6
4.7
6
100
0
56
53
32
0
14
1.41
45665106--45665138
8
4.1
8
100
0
66
63
0
0
36
0.95
45667813--45667844
15
2.0
17
88
11
50
34
18
21
25
1.96
45669702--45669733
15
2.1
15
100
0
64
59
21
6
12
1.55
45670208--45670255
14
3.4
14
86
11
53
72
2
2
22
1.05
45670208--45670255
21
2.2
21
85
10
62
72
2
2
22
1.05
45670224--45670255
7
4.6
7
100
0
64
75
0
0
25
0.81
45670785--45670846
9
6.9
9
81
5
63
48
22
4
24
1.70
45670786--45670846
18
3.4
18
86
0
86
47
22
4
24
1.71
45670912--45670936
13
1.9
13
100
0
50
12
0
48
40
1.40
45670913--45670950
18
2.1
18
95
0
67
7
2
47
42
1.46
45672391--45672430
11
3.6
11
83
12
55
42
0
0
57
0.98
45679298--45679345
22
2.2
22
84
0
60
41
4
18
35
1.70
45680534--45680591
29
2.0
29
93
0
98
36
8
25
29
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45681017--45681176
42
3.7
42
76
12
162
22
20
29
28
1.98
45688499--45688670
46
3.8
45
80
11
215
21
21
27
29
1.99
45688496--45688665
92
1.8
92
96
0
313
21
21
28
28
1.99
45693094--45693277
40
4.6
40
82
2
226
25
25
25
23
2.00
45693094--45693277
80
2.3
80
88
1
262
25
25
25
23
2.00
45696740--45696766
14
1.9
14
100
0
54
14
0
3
81
0.82
45702024--45702061
5
7.6
5
100
0
76
81
0
0
18
0.69
45704768--45705204
225
2.0
221
92
1
730
29
13
20
36
1.91
45711454--45711561
53
2.0
53
89
3
164
52
12
9
25
1.69
45711956--45711991
13
2.8
13
91
0
63
8
30
16
44
1.77
45720846--45720870
12
2.1
12
100
0
50
76
8
0
16
1.02
45723060--45723207
77
1.9
77
92
0
251
43
20
9
25
1.82
45725133--45725170
19
2.0
20
89
5
60
47
7
10
34
1.67
45725414--45725438
13
1.9
13
100
0
50
72
0
16
12
1.13
45725466--45725510
19
2.4
19
82
10
58
71
0
28
0
0.87
45733260--45733331
17
4.1
17
72
19
67
27
11
11
50
1.72
45748533--45748580
24
2.0
24
100
0
96
16
33
16
33
1.92
45752503--45752624
46
2.7
46
90
0
190
29
27
21
21
1.98
45752501--45752643
46
3.1
45
82
6
128
29
27
20
21
1.98
45753047--45753106
30
2.0
30
83
0
75
33
25
3
38
1.72
45760033--45760203
93
1.8
93
93
0
297
28
28
21
21
1.98
45760028--45760200
46
3.7
46
79
10
208
29
27
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45760621--45760680
30
2.0
30
90
0
93
30
25
8
36
1.85
45767608--45767778
93
1.8
93
92
0
288
28
28
21
22
1.99
45767603--45767775
46
3.7
46
79
10
199
29
27
20
22
1.99
45768197--45768256
30
2.0
30
86
0
84
31
25
3
40
1.72
45768973--45769003
11
2.7
12
95
5
55
58
3
0
38
1.15
45772112--45772162
20
2.5
20
87
6
68
47
23
21
7
1.77
45778604--45778641
10
3.5
11
89
10
60
0
21
0
78
0.74
45778604--45778635
5
6.2
5
92
7
55
0
18
0
81
0.70
45779728--45779778
25
2.0
25
88
0
75
31
21
19
27
1.97
45779818--45779857
10
3.9
10
87
6
62
30
20
20
30
1.97
45779903--45779972
25
2.8
25
93
0
113
27
25
21
25
1.99
45779902--45779999
25
4.0
24
79
13
85
28
24
21
25
1.99
45779903--45779997
50
1.9
50
80
8
113
28
24
22
25
1.99
45784859--45784950
48
1.9
48
86
8
134
40
28
13
18
1.88
45785136--45785277
27
5.3
27
81
3
160
40
21
7
30
1.80
45785130--45785284
54
2.9
54
80
5
179
40
21
7
31
1.80
45785299--45785412
27
4.2
27
82
0
147
34
22
3
39
1.71
45785337--45785531
27
7.2
27
82
1
124
38
24
5
31
1.78
45785229--45785468
81
3.0
81
75
2
232
37
21
7
34
1.81
45785136--45785476
81
4.2
81
74
3
211
38
21
6
32
1.80
45785391--45785530
54
2.6
54
81
2
147
41
24
5
28
1.77
45785515--45785737
27
8.3
27
81
2
241
36
17
18
26
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45785432--45785692
54
4.8
54
80
5
208
40
19
13
26
1.88
45785484--45785709
81
2.8
81
84
6
246
38
18
15
26
1.91
45786140--45786196
6
9.3
6
75
17
55
17
17
15
49
1.81
45787996--45788171
46
3.8
46
76
12
162
30
30
19
19
1.96
45794352--45794544
37
5.1
40
66
18
162
27
8
32
31
1.86
45794322--45794508
37
5.1
34
66
18
126
27
8
31
33
1.86
45794322--45794544
74
3.0
74
100
0
446
26
8
32
32
1.86
45795051--45795101
25
2.0
25
96
0
93
33
23
17
25
1.96
45795141--45795180
10
3.9
10
87
6
62
30
20
20
30
1.97
45796643--45796668
12
2.2
12
100
0
52
23
7
7
61
1.49
45801296--45801388
27
3.4
27
83
4
98
37
18
18
25
1.93
45809059--45809235
93
1.9
93
90
2
284
22
18
28
30
1.97
45809055--45809227
47
3.7
46
76
14
176
22
19
28
29
1.98
45810844--45811018
46
3.8
45
78
7
190
29
29
20
21
1.98
45810852--45811023
93
1.8
93
92
0
290
28
30
20
20
1.98
45812479--45812715
49
4.8
49
80
6
246
25
16
27
30
1.97
45812479--45812702
101
2.3
97
83
5
270
25
16
27
31
1.96
45813010--45813049
11
3.5
11
80
6
53
50
5
2
42
1.37
45813004--45813049
23
2.0
23
100
0
92
47
4
4
43
1.42
45813333--45813378
23
2.0
23
100
0
92
47
8
26
17
1.76
45815746--45815780
18
1.9
18
94
0
61
17
45
22
14
1.84
45827271--45827441
46
3.7
46
75
16
163
29
19
27
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45835196--45835288
20
4.7
20
75
2
98
41
21
27
8
1.82
45847548--45847608
24
2.5
24
84
5
70
19
18
29
32
1.95
45856123--45856191
27
2.6
27
76
0
66
39
11
20
28
1.87
45856578--45856731
27
5.7
26
81
3
137
31
11
18
38
1.86
45856564--45856731
54
3.1
53
73
8
151
30
11
17
39
1.86
45856575--45856731
81
1.9
81
84
2
208
31
10
19
38
1.86
45858072--45858138
24
2.8
24
73
8
73
26
34
2
35
1.72
45859966--45860041
38
2.0
38
92
0
125
34
17
18
30
1.94
45864602--45864680
37
2.1
37
85
0
113
25
31
17
25
1.97
45864798--45865294
47
10.7
47
93
2
763
29
29
8
32
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325