Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  320  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100883130--100883183
11
4.8
10
86
11
54
14
3
1
79
0.95
100883120--100883196
6
12.7
6
69
17
52
16
3
1
77
0.98
100886066--100886098
13
2.6
13
90
4
50
39
0
12
48
1.40
100890778--100890888
47
2.4
48
77
14
124
36
20
15
27
1.93
100895919--100895947
11
2.6
11
100
0
58
55
10
13
20
1.68
100899253--100899286
16
2.1
16
88
0
50
32
11
0
55
1.36
100901117--100901166
26
1.9
26
83
0
64
44
2
8
46
1.44
100904971--100905015
20
2.2
21
80
11
58
11
17
4
66
1.38
100908167--100908199
17
1.9
17
88
11
50
27
0
3
69
1.03
100908175--100908237
30
2.1
30
91
5
101
26
3
11
58
1.47
100908299--100908338
18
2.2
18
86
8
55
20
0
12
67
1.22
100912029--100912093
20
3.3
19
82
8
69
52
9
1
36
1.43
100914028--100914075
20
2.4
19
80
10
51
33
8
2
56
1.41
100916902--100916963
11
5.7
11
82
3
81
32
9
20
37
1.86
100916895--100916961
22
3.1
22
84
2
82
31
13
19
35
1.90
100920776--100920876
51
2.0
51
92
0
166
34
21
10
32
1.88
100920813--100920948
72
1.9
72
93
0
236
31
23
9
35
1.87
100920899--100921008
44
2.5
44
90
0
184
33
22
11
31
1.90
100920773--100920992
116
1.8
118
88
6
336
33
22
10
34
1.87
100922197--100922319
51
2.4
51
87
2
167
29
21
9
39
1.85
100922787--100922818
16
2.0
16
93
0
55
6
15
15
62
1.51
100925515--100925569
21
2.5
22
76
5
58
12
3
29
54
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100928377--100928429
25
2.3
23
78
18
56
62
9
3
24
1.42
100929678--100929712
16
2.2
16
89
0
52
65
22
0
11
1.24
100930328--100930370
18
2.4
17
77
14
50
39
2
2
55
1.25
100941438--100941487
25
2.0
25
96
0
91
26
4
22
48
1.68
100942919--100943000
27
3.0
27
60
19
62
34
25
15
24
1.95
100942890--100943000
54
2.1
54
98
0
213
34
26
15
24
1.95
100948362--100948410
24
2.0
24
92
0
80
24
28
8
38
1.84
100962718--100962754
19
1.9
19
88
0
56
70
5
2
21
1.20
100962894--100962961
31
2.3
31
80
12
79
66
2
0
30
1.07
100963086--100963119
17
2.0
17
88
0
50
29
0
0
70
0.87
100965207--100965256
24
2.0
25
88
3
75
44
0
4
52
1.20
100985008--100985032
7
3.6
7
100
0
50
48
16
0
36
1.46
100986347--100986371
12
2.1
12
100
0
50
24
16
8
52
1.70
100989548--100989731
38
4.7
37
71
17
140
44
1
3
51
1.27
100989595--100989748
18
8.9
18
66
18
76
42
0
2
54
1.19
100989557--100989748
56
3.3
55
74
19
208
43
1
3
52
1.24
100989530--100989831
120
2.5
120
97
0
568
43
0
4
51
1.28
100990086--100990127
15
2.7
16
82
14
52
45
0
2
52
1.13
100990077--100990118
15
2.9
15
82
10
52
47
0
0
52
1.00
100990243--100990284
15
2.7
16
82
14
52
45
0
2
52
1.13
100990234--100990275
15
2.9
15
82
10
52
47
0
0
52
1.00
100990219--100990457
75
3.1
75
63
16
180
46
3
3
46
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100990063--100990534
157
3.0
157
98
0
890
47
4
3
44
1.40
100990387--100990421
18
2.0
17
88
5
52
45
0
0
54
0.99
100990657--100990724
16
4.2
16
96
0
127
38
38
0
23
1.55
100993465--100993502
18
2.1
18
85
9
51
78
0
13
7
0.94
100993484--100993527
15
2.9
15
77
9
54
70
0
18
11
1.16
100994816--100994848
15
2.2
15
89
10
50
51
6
0
42
1.26
100995140--100995240
21
4.9
21
67
19
68
54
5
0
38
1.32
100998240--100998296
28
2.0
29
86
10
82
40
10
7
42
1.66
100998309--100998355
24
2.0
24
100
0
94
31
17
8
42
1.79
100998287--100998367
24
2.9
28
73
19
80
33
16
8
41
1.78
101001177--101001850
239
2.8
240
93
0
1118
31
12
21
35
1.90
101004578--101004705
59
2.1
60
88
2
186
45
2
4
47
1.36
101004600--101004702
31
3.4
31
72
12
88
43
2
3
49
1.35
101004689--101004729
20
2.0
20
86
9
57
39
2
7
51
1.43
101004891--101004921
16
1.9
16
93
0
53
51
6
9
32
1.60
101015101--101015189
28
3.2
28
78
10
67
28
4
3
64
1.29
101015124--101015192
28
2.4
28
75
15
70
30
2
1
65
1.16
101015512--101015565
29
1.9
30
85
14
80
46
7
14
31
1.73
101017010--101017138
58
2.3
58
77
10
140
26
15
15
42
1.87
101020668--101020708
21
2.0
21
85
0
55
31
2
21
43
1.66
101020920--101021128
41
5.1
41
84
7
216
36
21
22
19
1.95
101021284--101021335
14
3.6
15
76
2
54
30
0
23
46
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101021342--101021448
7
15.0
7
70
13
58
22
0
38
38
1.61
101024151--101024194
21
2.0
22
82
4
54
27
9
15
47
1.76
101025488--101025759
43
6.3
43
81
6
268
23
15
30
30
1.95
101025488--101025760
86
3.2
86
81
6
315
23
15
30
30
1.95
101031408--101031590
90
2.0
91
83
5
228
36
19
8
35
1.82
101031734--101031828
9
10.4
9
75
13
70
66
2
0
31
1.04
101031734--101031828
19
5.2
18
72
13
61
66
2
0
31
1.04
101031794--101031829
10
3.7
10
88
7
56
58
0
0
41
0.98
101032111--101032167
27
2.2
26
80
3
60
40
0
0
59
0.97
101034198--101034237
20
2.0
20
100
0
80
40
35
0
25
1.56
101034639--101034668
11
2.6
12
89
10
53
0
13
0
86
0.57
101036600--101036639
20
1.9
20
85
10
53
22
15
12
50
1.77
101039084--101039165
7
11.3
7
74
7
56
25
0
41
32
1.56
101039022--101039094
36
2.0
35
82
10
85
24
0
38
36
1.56
101039086--101039140
22
2.5
22
84
0
74
27
0
32
40
1.57
101039069--101039127
29
2.1
28
87
9
84
27
0
38
33
1.57
101039199--101039254
21
2.6
22
77
8
62
21
0
26
51
1.48
101039244--101039302
21
2.7
23
80
10
63
18
0
38
42
1.51
101039292--101039333
15
2.8
15
79
13
50
11
2
35
50
1.52
101039241--101039314
22
3.4
22
76
12
64
17
1
39
41
1.58
101039347--101039377
15
2.1
14
94
5
53
16
0
51
32
1.44
101039347--101039377
7
4.3
7
92
8
53
16
0
51
32
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101039570--101039644
26
2.9
27
90
4
109
45
6
2
45
1.43
101039839--101039980
40
3.5
41
87
7
207
40
11
21
26
1.87
101042267--101043152
241
3.7
241
97
0
1646
34
18
14
32
1.91
101043289--101043366
39
2.0
39
97
0
147
46
21
0
32
1.52
101043285--101043397
57
2.0
57
87
0
163
46
23
0
29
1.59
101043272--101043384
9
12.2
9
79
5
118
46
21
0
30
1.57
101049424--101049540
43
2.7
42
83
7
155
24
29
21
24
1.99
101053270--101053483
47
4.6
47
81
6
199
28
15
26
29
1.96
101053416--101053526
42
2.6
42
88
2
152
32
15
24
27
1.95
101057159--101057241
35
2.4
35
82
7
91
34
1
2
61
1.17
101063390--101063432
22
2.0
22
85
0
59
20
4
11
62
1.46
101064641--101064699
29
2.0
29
100
0
118
33
13
23
28
1.93
101077594--101077638
3
14.3
3
81
9
54
60
2
6
31
1.35
101081802--101081839
2
19.0
2
94
0
67
47
0
52
0
1.00
101085550--101085584
18
1.9
18
88
0
52
48
5
0
45
1.26
101089294--101089319
3
8.7
3
100
0
52
34
34
0
30
1.58
101090383--101090439
28
2.0
28
100
0
114
43
10
3
42
1.56
101093392--101093449
19
3.1
18
82
5
53
60
3
1
34
1.24
101095613--101095689
9
8.6
9
85
0
100
45
20
7
25
1.78
101095613--101095689
36
2.1
36
90
0
118
45
20
7
25
1.78
101095709--101095755
6
7.5
6
81
9
58
17
0
6
76
0.98
101095780--101095804
13
1.9
13
100
0
50
12
0
48
40
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101095781--101095818
18
2.1
18
95
0
67
7
2
47
42
1.46
101096125--101096171
21
2.2
21
88
0
67
65
0
0
34
0.93
101096143--101096178
15
2.5
14
86
4
54
72
0
0
27
0.85
101096126--101096178
21
2.4
22
78
15
65
67
0
0
32
0.91
101097217--101097256
15
2.5
15
84
8
53
62
0
0
37
0.95
101098275--101098450
45
4.0
45
89
1
257
26
27
22
23
2.00
101103282--101103319
6
6.3
6
93
0
67
50
0
18
31
1.47
101103449--101103488
21
1.9
21
84
0
53
55
0
2
42
1.13
101104195--101104261
30
2.2
30
83
0
80
43
1
7
47
1.40
101106651--101106680
15
2.0
15
100
0
60
46
13
6
33
1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325