genome.fa.s5.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  145  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45865266--45865328	25	2.5	25	87	10	92	41	25	0	33	1.56
45868195--45868534	40	8.6	40	87	1	384	25	28	21	24	1.99
45868182--45868454	119	2.3	119	89	1	404	26	28	20	24	1.99
45868182--45868496	119	2.6	118	84	4	402	26	28	20	24	1.99
45868182--45868496	159	2.0	159	84	1	407	26	28	20	24	1.99
45868195--45868534	159	2.1	159	82	2	396	25	28	21	24	1.99
45868182--45868534	119	3.0	119	84	4	356	26	28	20	24	1.99
45868352--45868613	40	6.6	40	83	6	225	25	28	21	24	1.99
45868358--45868613	79	3.2	80	80	6	211	25	28	21	24	1.99
45870466--45870543	36	2.1	37	88	2	113	25	32	17	24	1.97
45870662--45871073	47	8.8	47	95	0	727	29	30	8	32	1.87
45875541--45875577	15	2.5	15	95	0	65	45	0	13	40	1.43
45878080--45878122	18	2.4	18	84	0	59	37	11	9	41	1.74
45892328--45892543	38	5.2	38	72	18	171	30	23	15	31	1.95
45892373--45892581	47	4.6	47	78	11	247	30	22	15	30	1.95
45892335--45892541	85	2.4	85	95	0	360	29	23	15	30	1.95
45892458--45892579	48	2.6	47	88	1	172	31	21	15	31	1.94
45901855--45901947	25	3.8	25	79	11	102	31	21	23	23	1.99
45904202--45904302	49	2.1	49	96	0	184	34	18	16	29	1.94
45909285--45909470	40	4.7	40	86	5	218	25	22	26	25	2.00
45909338--45909493	80	2.0	79	82	8	192	26	20	26	26	1.99
45911478--45911528	23	2.2	23	100	0	102	56	7	17	17	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45915924--45916147	40	5.7	40	88	4	278	25	27	21	24	1.99
45915924--45916147	79	2.8	80	85	7	296	25	27	21	24	1.99
45918255--45918339	28	3.1	27	81	8	109	34	20	23	22	1.97
45918441--45918504	26	2.4	27	86	2	85	26	9	26	37	1.87
45918751--45918786	8	4.5	8	96	0	63	8	27	27	36	1.86
45919528--45919673	73	2.0	73	100	0	292	31	34	13	20	1.92
45939859--45939896	20	2.0	20	89	5	60	23	10	26	39	1.87
45952913--45952958	17	2.6	17	86	3	65	15	26	39	19	1.91
45955012--45955065	22	2.5	22	81	6	65	68	3	5	22	1.26
45957173--45957212	21	1.9	21	94	0	71	47	5	10	37	1.59
45964322--45964353	12	2.7	12	95	0	55	6	15	50	28	1.68
45969020--45969357	130	2.6	129	84	7	420	26	16	19	36	1.93
45972414--45972460	23	2.0	23	88	8	69	42	10	19	27	1.84
45975675--45975717	16	2.7	16	85	0	59	48	16	23	11	1.78
45975925--45976020	29	3.3	29	91	1	149	26	13	29	31	1.94
45983075--45983112	19	2.0	20	85	15	53	39	23	0	36	1.55
45983342--45983512	93	1.8	93	93	0	297	28	28	21	21	1.98
45983337--45983509	46	3.7	46	79	10	208	29	27	20	21	1.98
45997067--45997239	46	3.7	46	79	10	208	21	20	27	29	1.98
45997064--45997234	93	1.8	93	93	0	297	21	21	28	28	1.98
45999247--45999281	18	1.9	18	94	0	61	51	11	14	22	1.74
45999277--45999359	40	2.1	40	100	0	166	50	20	4	24	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45999458--45999606	50	2.9	50	75	11	142	40	12	13	33	1.82
46010428--46010460	6	5.7	6	89	7	50	84	0	3	12	0.72
46010428--46010460	11	2.8	12	90	4	50	84	0	3	12	0.72
46014630--46014856	48	4.8	48	73	7	178	25	19	24	30	1.98
46025946--46025990	18	2.6	18	85	3	56	13	40	24	22	1.90
46029218--46029339	46	2.6	45	84	8	156	24	29	18	27	1.98
46029121--46029380	94	2.8	93	75	12	248	25	28	18	27	1.98
46035643--46035756	52	2.2	52	96	0	210	20	35	26	18	1.95
46068492--46068711	46	4.9	45	93	3	295	23	30	19	26	1.98
46076897--46076921	1	25.0	1	100	0	50	0	0	0	100	0.00
46081604--46081679	5	14.8	5	72	20	59	73	3	19	2	1.11
46081604--46081677	22	3.3	21	73	21	62	72	4	20	2	1.13
46086649--46086727	40	2.0	40	100	0	158	25	10	26	37	1.87
46089415--46089455	3	13.7	3	100	0	82	68	0	0	31	0.90
46092302--46092367	24	3.0	21	73	22	55	40	0	6	53	1.26
46098881--46099045	43	3.9	42	75	7	136	24	19	24	31	1.98
46114307--46114376	8	8.2	8	71	22	54	60	1	1	37	1.15
46114309--46114363	25	2.1	26	90	6	85	60	1	1	36	1.18
46114308--46114373	25	2.5	26	79	16	82	59	1	1	37	1.16
46114308--46114369	18	3.5	18	76	10	65	59	1	1	37	1.17
46121446--46121660	48	4.5	48	88	1	315	28	31	16	23	1.96
46140070--46140233	42	3.9	42	77	3	168	28	14	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46143742--46144172	214	2.0	214	100	0	862	25	19	10	43	1.84
46145690--46145783	47	2.0	47	95	0	170	21	23	17	38	1.93
46146599--46146623	12	2.1	12	100	0	50	48	0	0	52	1.00
46149911--46150065	42	3.6	42	74	11	145	29	25	18	27	1.98
46149911--46150075	44	3.8	42	74	10	154	29	24	18	27	1.98
46177875--46178099	40	5.7	40	83	5	269	24	21	28	25	1.99
46177957--46178118	40	4.1	40	88	4	134	25	21	29	23	1.99
46177957--46178132	80	2.2	80	83	6	207	26	21	28	23	1.99
46187188--46187516	113	2.9	113	76	5	293	36	11	13	38	1.81
46199345--46199398	23	2.4	22	75	22	58	9	24	0	66	1.20
46209614--46209665	23	2.3	22	75	21	54	9	23	1	65	1.32
46215117--46215267	35	4.3	34	79	6	142	38	31	11	17	1.87
46215106--46215267	70	2.3	69	80	6	175	38	31	11	18	1.86
46231513--46231548	7	5.0	7	89	3	54	30	0	2	66	1.06
46233252--46233526	47	5.8	46	72	11	168	29	18	29	22	1.98
46233215--46233431	94	2.3	94	87	3	303	29	18	27	23	1.98
46233215--46233521	94	3.2	94	81	7	275	29	19	28	23	1.98
46238620--46238673	25	2.2	23	84	15	65	42	7	0	50	1.30
46238651--46239025	178	2.1	178	93	1	642	37	16	4	41	1.69
46251104--46251244	40	3.5	40	86	0	165	40	14	24	19	1.90
46251132--46251273	40	3.5	40	88	0	185	42	13	23	21	1.88
46251342--46251477	46	2.9	47	83	7	150	21	27	7	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46252958--46253024	20	3.3	20	68	12	64	25	40	14	19	1.90
46252976--46253039	20	3.0	22	64	13	62	31	31	12	25	1.92
46252958--46253039	41	2.0	41	100	0	164	29	34	14	21	1.93
46254648--46254823	50	3.6	50	78	8	166	25	30	17	26	1.97
46254873--46255055	46	3.9	46	78	7	192	23	28	18	28	1.98
46254646--46255055	48	8.7	47	71	14	217	24	29	18	27	1.98
46265067--46265119	26	2.0	26	82	7	63	26	15	20	37	1.92
46266601--46266684	26	3.2	26	96	0	150	36	25	4	33	1.77
46268009--46268034	13	2.0	13	100	0	52	30	15	15	38	1.88
46276059--46276085	13	2.1	13	100	0	54	40	22	14	22	1.90
46276680--46276767	23	3.8	23	80	4	88	30	12	17	39	1.86
46276680--46276768	47	1.9	46	84	6	117	30	12	16	40	1.86
46283903--46283959	9	6.1	9	80	8	51	75	3	0	21	0.95
46284167--46284226	31	1.9	31	82	0	75	35	20	6	38	1.79
46294713--46294844	70	1.9	71	82	4	169	28	15	25	30	1.96
46294959--46295024	26	2.6	25	84	13	82	25	21	21	31	1.98
46297557--46297606	25	1.9	27	84	8	68	36	2	18	44	1.61
46298600--46298659	17	3.5	17	90	0	84	21	23	35	20	1.96
46311778--46312000	47	4.7	47	89	2	315	32	8	31	27	1.87
46312119--46312198	37	2.2	37	88	0	115	23	17	31	27	1.97
46315823--46315873	25	2.0	25	96	0	93	37	25	7	29	1.84
46321117--46321150	18	1.9	18	88	5	52	20	44	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46325479--46325547	26	2.5	28	86	6	106	31	26	13	28	1.93
46329021--46329065	23	2.0	23	90	0	72	42	26	17	13	1.86
46329643--46329688	21	2.2	21	84	7	58	43	17	0	39	1.49
46334714--46334887	48	3.7	46	76	6	152	29	18	27	25	1.98
46336210--46336277	30	2.3	30	94	0	118	42	11	2	42	1.56
46349507--46349586	30	2.7	30	80	12	85	55	16	17	11	1.70
46349513--46349590	15	5.2	15	73	14	63	55	14	17	12	1.70
46352487--46352660	45	3.8	45	76	10	190	28	28	20	22	1.98
46352494--46352664	93	1.8	92	92	1	288	28	28	20	22	1.99
46352495--46352680	46	4.0	46	68	22	122	28	28	19	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325