genome.fa.s5.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  136  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42505358--42505394	19	1.9	19	100	0	74	48	5	10	35	1.61
42505385--42505422	14	2.7	14	91	0	58	34	18	10	36	1.85
42511722--42511765	6	7.2	6	84	5	61	45	15	20	18	1.85
42511745--42511855	45	2.5	45	79	5	127	40	17	18	23	1.91
42512063--42512149	40	2.2	40	87	0	120	40	16	10	33	1.82
42512956--42512998	18	2.4	18	96	0	77	51	0	0	48	1.00
42512959--42512996	15	2.5	15	95	0	67	47	0	0	52	1.00
42513245--42513320	3	25.7	3	73	12	59	55	5	0	39	1.23
42513234--42513283	26	1.9	26	87	0	73	48	4	0	48	1.20
42513243--42513302	20	3.0	20	76	9	61	53	5	0	41	1.23
42515884--42515908	13	1.9	13	100	0	50	52	16	8	24	1.70
42521013--42521044	15	2.1	15	94	0	55	21	28	6	43	1.77
42522936--42523070	39	3.4	38	75	10	103	28	27	20	23	1.99
42524783--42524808	8	3.2	8	100	0	52	50	0	0	50	1.00
42524954--42525013	21	2.8	20	73	14	57	55	3	0	41	1.16
42528933--42528963	16	1.9	16	93	0	53	48	0	0	51	1.00
42529511--42529738	107	2.1	108	88	4	336	36	16	11	35	1.85
42530308--42530351	21	2.1	21	82	0	52	34	25	2	38	1.68
42533652--42533676	7	3.6	7	100	0	50	28	0	12	60	1.32
42537517--42537573	30	1.9	30	88	0	87	12	24	35	28	1.91
42539138--42539640	125	4.0	126	89	0	731	28	16	17	37	1.91
42539134--42539635	251	2.0	251	89	0	763	28	16	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42539742--42539805	34	1.9	33	93	3	110	42	18	0	39	1.51
42539743--42539946	66	3.3	61	81	14	210	43	21	0	35	1.56
42539781--42539835	23	2.3	24	84	6	67	40	23	0	36	1.55
42539797--42539940	32	4.6	32	74	16	122	43	21	0	34	1.58
42539927--42540006	22	3.3	23	80	14	90	42	20	0	37	1.52
42544747--42544863	62	1.9	61	86	5	166	49	4	3	42	1.39
42544842--42544890	20	2.7	18	77	22	57	51	4	2	42	1.32
42545214--42545402	94	2.0	94	92	0	315	34	15	6	42	1.73
42547062--42547181	57	2.1	58	85	1	161	48	5	17	28	1.70
42548484--42548534	21	2.4	21	86	0	66	39	15	27	17	1.90
42548676--42548714	17	2.3	16	83	12	51	48	15	0	35	1.45
42555392--42555473	17	4.8	17	71	26	57	56	3	3	36	1.35
42559204--42559245	23	1.9	21	85	9	57	35	30	0	33	1.58
42559698--42559762	21	3.2	21	91	4	98	41	16	26	15	1.88
42562957--42562990	18	1.9	18	88	5	52	41	5	5	47	1.52
42568566--42568633	22	3.2	22	68	19	72	63	5	5	25	1.40
42568559--42568639	41	2.0	42	97	2	155	65	6	4	23	1.35
42572957--42573084	33	3.9	32	72	11	89	25	26	17	30	1.97
42573023--42573292	105	2.6	105	93	1	461	25	22	17	34	1.95
42574389--42574464	38	2.0	38	100	0	152	44	15	2	36	1.61
42577186--42577335	56	2.7	56	88	0	237	32	6	15	45	1.72
42580051--42580307	39	6.6	39	90	1	399	14	25	22	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42583413--42583458	24	1.9	24	86	0	65	36	4	10	47	1.58
42585381--42585426	24	1.9	24	90	0	74	36	4	8	50	1.53
42603058--42603099	22	1.9	22	90	0	66	19	14	40	26	1.89
42608895--42609119	40	5.7	40	86	5	269	26	28	21	24	1.99
42608895--42609119	119	1.9	120	82	6	287	26	28	21	24	1.99
42616168--42616392	40	5.7	40	87	5	287	25	27	22	24	2.00
42616168--42616392	119	1.9	120	84	6	305	25	27	22	24	2.00
42619159--42619226	9	7.7	9	73	23	56	35	2	8	52	1.47
42631850--42631984	65	2.1	66	87	1	191	22	20	25	31	1.98
42632011--42632305	73	3.9	74	88	5	407	27	18	22	31	1.97
42632011--42632437	237	1.8	229	92	6	718	28	17	21	32	1.96
42632380--42632659	54	5.0	54	87	6	384	28	13	17	40	1.88
42632380--42632659	114	2.5	111	85	10	399	28	13	17	40	1.88
42632385--42633122	309	2.4	309	96	1	1334	28	15	17	38	1.90
42632702--42632968	54	4.8	54	87	5	367	28	14	17	39	1.89
42632702--42632968	114	2.4	111	85	7	373	28	14	17	39	1.89
42634496--42634539	23	1.9	23	90	9	72	75	6	0	18	1.02
42635272--42635341	9	7.7	9	73	23	58	35	2	8	52	1.47
42635385--42635419	3	11.7	3	88	11	54	31	0	2	65	1.07
42638497--42638525	14	2.0	15	93	6	51	68	3	6	20	1.27
42640187--42640887	144	4.9	144	71	11	332	29	21	17	31	1.96
42640290--42640741	94	4.8	93	84	3	539	29	21	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42640715--42640929	94	2.3	93	83	4	288	28	20	20	29	1.98
42640383--42640929	50	11.6	49	69	18	245	29	22	18	30	1.97
42640715--42640966	94	2.7	94	83	2	274	27	23	19	30	1.98
42640507--42640966	238	1.9	238	84	2	611	28	22	17	30	1.97
42640847--42640931	44	1.9	43	86	9	118	29	22	18	29	1.98
42653133--42653204	5	14.6	5	82	8	76	18	0	5	76	0.97
42653150--42653210	29	2.1	28	85	8	79	22	0	3	73	0.97
42661370--42661425	5	10.6	5	84	7	67	19	0	3	76	0.93
42661382--42661425	18	2.6	17	86	13	65	20	0	0	79	0.73
42671850--42671891	21	2.0	21	100	0	84	33	28	9	28	1.88
42676165--42676335	93	1.8	93	94	2	308	28	28	21	21	1.98
42676157--42676332	46	3.8	46	80	14	218	29	28	20	21	1.98
42679229--42679406	27	6.6	27	84	3	205	29	28	15	26	1.96
42679250--42679405	82	1.9	81	88	3	233	29	28	15	26	1.96
42684333--42684421	28	3.1	28	82	6	99	33	30	12	23	1.92
42684385--42684510	27	4.6	27	81	5	119	27	26	16	28	1.97
42690865--42691042	27	6.6	27	84	3	205	29	28	15	26	1.96
42690886--42691041	82	1.9	81	88	3	233	29	28	15	26	1.96
42700598--42700712	57	2.0	57	98	0	221	33	17	26	22	1.96
42701270--42701355	41	2.1	40	82	2	100	63	10	4	20	1.43
42701342--42701406	28	2.3	27	76	7	67	63	0	6	30	1.19
42702957--42703005	21	2.3	21	80	13	55	38	2	2	57	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42705040--42705323	142	2.0	142	95	0	514	37	3	20	38	1.71
42707960--42708179	46	4.7	45	79	8	183	21	29	19	29	1.98
42708008--42708182	94	1.9	92	85	4	244	21	28	20	29	1.98
42727909--42728024	43	2.7	42	82	7	153	31	27	17	24	1.97
42744078--42744108	12	2.6	12	100	0	62	12	32	35	19	1.90
42745211--42745367	43	3.7	42	82	9	160	33	26	14	25	1.94
42745926--42745982	27	2.1	27	100	0	114	50	22	3	22	1.64
42747408--42747473	30	2.2	30	86	0	96	15	28	27	28	1.96
42751963--42752087	46	2.7	47	75	2	135	24	13	28	34	1.93
42756561--42756592	15	2.1	15	94	0	55	15	6	9	68	1.36
42758342--42758379	20	1.9	20	100	0	76	42	2	10	44	1.52
42759500--42759563	31	2.0	33	82	8	80	34	6	0	59	1.23
42760170--42760210	16	2.5	17	84	7	50	39	0	0	60	0.96
42761107--42761152	2	22.5	2	87	12	67	47	4	0	47	1.21
42761701--42761756	22	2.6	22	86	8	71	53	1	5	39	1.34
42762415--42762451	19	2.1	19	90	10	60	62	2	0	35	1.10
42768515--42768640	18	6.9	18	91	3	200	38	14	11	36	1.81
42768515--42768640	53	2.3	55	91	4	211	38	14	11	36	1.81
42769024--42769376	83	4.2	83	95	0	616	27	20	20	32	1.97
42769300--42769896	119	5.0	119	94	1	1011	29	18	17	33	1.95
42769300--42769890	235	2.5	236	94	0	1013	30	18	17	33	1.95
42769882--42770076	44	4.4	44	72	11	166	26	24	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42770937--42770997	1	61.0	1	73	0	50	0	13	0	86	0.56
42770938--42770997	5	10.8	6	81	15	60	0	13	0	86	0.57
42770937--42770996	22	2.8	20	85	14	77	0	13	0	86	0.57
42770939--42770996	16	3.5	16	78	21	66	0	13	0	86	0.58
42776686--42776744	17	3.5	17	70	25	54	64	0	1	33	1.04
42777224--42777348	18	6.9	18	88	5	182	36	14	12	37	1.83
42777224--42777348	35	3.5	36	90	7	184	36	14	12	37	1.83
42777224--42777348	53	2.3	54	94	2	225	36	14	12	37	1.83
42785818--42785856	5	7.6	5	94	5	69	17	0	0	82	0.68
42785989--42786026	5	7.6	5	88	11	60	18	0	0	81	0.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325