Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  11  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3879666--3879735
11
6.5
11
75
15
58
67
2
1
28
1.14
3883342--3883428
21
4.0
23
79
10
92
37
25
20
16
1.93
3890049--3890141
39
2.5
37
80
7
98
27
29
22
20
1.98
3891235--3891268
17
2.1
16
88
5
50
2
14
5
76
1.09
3891257--3891307
14
3.6
14
76
7
50
17
13
0
68
1.21
3901319--3901494
46
3.8
46
78
12
207
20
21
28
29
1.98
3901316--3901487
93
1.8
93
94
0
308
20
21
29
28
1.98
3903223--3903330
44
2.4
44
87
3
144
29
23
13
33
1.93
3909492--3909534
20
2.2
20
82
0
50
34
6
4
53
1.49
3920423--3920575
82
1.9
83
84
4
211
43
11
4
40
1.61
3935963--3936169
47
4.3
47
79
6
175
29
27
16
26
1.97
3941731--3941757
13
2.1
13
100
0
54
40
14
14
29
1.86
3950934--3951017
44
1.9
44
100
0
168
21
16
19
42
1.89
3955238--3955273
16
2.2
17
95
5
65
36
0
0
63
0.94
3956873--3956906
17
2.0
17
88
11
52
5
5
5
82
0.95
3963955--3964015
30
2.0
30
96
0
113
44
24
3
27
1.69
3969826--3969866
18
2.3
18
87
4
57
53
0
0
46
1.00
3969831--3969862
16
2.0
16
93
0
55
59
0
0
40
0.97
3969833--3969870
16
2.4
16
86
4
51
63
0
0
36
0.95
3970008--3970032
3
8.3
3
100
0
50
32
0
0
68
0.90
3979297--3979446
46
3.1
46
75
14
158
30
28
16
25
1.96
3980529--3980635
21
5.0
22
84
7
123
37
26
22
14
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3980840--3980951
28
4.0
29
92
2
176
47
30
3
18
1.66
3980840--3980951
57
2.0
56
89
5
172
47
30
3
18
1.66
3986611--3986716
46
2.3
46
85
3
133
20
22
16
39
1.92
3988720--3989086
46
7.6
49
87
8
440
34
14
22
28
1.93
3988720--3989086
98
3.7
97
85
9
501
34
14
22
28
1.93
3988734--3989086
196
1.8
196
92
0
607
34
14
22
28
1.93
3989050--3989195
37
4.0
37
91
1
233
36
15
22
24
1.93
3988720--3989075
150
2.4
149
89
4
467
34
14
21
28
1.93
3988720--3989091
144
2.6
143
88
7
382
34
14
22
28
1.93
3989797--3989970
46
3.8
46
97
0
312
22
25
14
36
1.93
3992373--3992440
30
2.3
30
84
5
84
27
19
5
47
1.72
3995138--3995498
46
7.8
46
95
0
596
22
24
15
37
1.93
3997607--3997696
39
2.3
38
81
5
101
25
26
23
24
2.00
3999621--3999680
21
2.8
20
73
14
57
55
3
0
41
1.16
4003511--4003824
46
6.8
46
91
2
443
21
23
14
41
1.90
4013787--4013819
15
2.1
17
88
11
52
42
24
0
33
1.55
4020109--4020146
5
7.8
5
88
5
51
0
23
0
76
0.79
4026224--4026251
13
2.2
13
100
0
56
57
7
0
35
1.26
4031634--4031665
16
1.9
17
93
6
57
59
0
0
40
0.97
4049996--4050538
270
2.0
269
97
1
1016
32
13
19
34
1.91
4052829--4052858
14
2.1
14
93
0
51
10
10
6
73
1.25
4054661--4054691
14
2.1
15
94
5
55
38
6
0
54
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4054940--4054998
24
2.5
23
83
10
75
37
0
0
62
0.95
4055050--4055113
27
2.4
27
94
0
119
15
34
35
14
1.88
4057359--4057430
3
23.7
3
80
8
74
0
33
0
66
0.92
4057666--4057705
16
2.4
16
87
4
53
60
0
0
40
0.97
4060574--4060625
26
2.0
25
85
3
68
65
3
3
26
1.27
4069113--4069163
21
2.4
21
87
6
59
58
0
0
41
0.98
4069119--4069173
21
2.7
21
88
8
78
54
0
0
45
0.99
4069120--4069190
27
2.7
27
79
14
85
53
1
0
45
1.09
4069328--4069371
20
2.3
18
92
7
70
86
4
9
0
0.70
4080982--4081024
4
10.0
4
87
9
59
48
0
2
48
1.14
4080982--4081024
18
2.5
16
85
14
59
48
0
2
48
1.14
4083786--4083824
15
2.4
16
87
8
53
35
0
0
64
0.94
4087957--4088000
17
2.5
18
82
14
56
9
29
0
61
1.27
4095128--4095386
73
3.5
73
96
0
473
41
23
6
28
1.79
4097013--4097072
30
2.0
30
87
6
86
53
11
13
21
1.71
4104475--4104500
2
13.0
2
100
0
52
50
0
0
50
1.00
4107027--4107192
53
3.1
53
88
6
221
25
15
28
30
1.96
4114546--4114711
53
3.1
53
88
6
221
25
15
28
30
1.96
4123442--4123483
19
2.2
19
100
0
84
33
26
14
26
1.94
4135013--4135044
9
3.6
9
100
0
64
71
0
28
0
0.86
4141076--4141139
28
2.3
29
78
13
71
53
0
0
46
1.00
4147619--4147740
55
2.3
53
77
8
122
37
9
6
45
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4149028--4149083
28
2.0
28
82
3
67
28
7
12
51
1.65
4151654--4151829
46
3.8
46
78
4
201
21
21
28
27
1.99
4151651--4151822
93
1.8
93
93
0
299
22
22
29
26
1.99
4154776--4154854
15
5.4
15
80
4
90
10
17
13
58
1.63
4157212--4157387
46
3.8
46
80
12
216
20
21
29
28
1.98
4157209--4157379
93
1.8
93
94
0
306
20
21
29
28
1.98
4166773--4166960
94
2.0
94
98
0
367
40
13
18
27
1.87
4172745--4172800
29
1.9
29
85
7
78
50
5
0
44
1.25
4176395--4176462
21
3.0
21
74
15
57
50
0
4
45
1.22
4176406--4176462
25
2.2
26
87
3
80
49
0
3
47
1.18
4177586--4177645
27
2.4
25
81
10
61
38
0
30
31
1.58
4178018--4178058
13
3.1
14
79
13
50
43
0
24
31
1.54
4179209--4179240
17
1.9
16
93
6
55
53
6
3
37
1.42
4183824--4183915
23
4.1
23
78
12
102
19
21
26
32
1.97
4201522--4201705
92
2.0
91
88
11
279
40
13
18
27
1.88
4207215--4207244
14
2.1
15
93
6
53
0
26
0
73
0.84
4207305--4207337
17
1.9
17
88
11
50
21
6
0
72
1.05
4211173--4211209
14
2.4
17
86
13
53
48
0
0
51
1.00
4211359--4211409
14
3.6
14
74
7
50
68
0
13
17
1.21
4211398--4211431
16
2.1
16
88
5
50
76
5
14
2
1.09
4212526--4212621
39
2.5
39
80
6
108
20
23
28
27
1.99
4213631--4213665
13
2.6
14
86
9
54
42
5
0
51
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4213638--4213665
13
2.2
13
100
0
56
42
7
0
50
1.30
4213909--4213939
15
2.1
14
94
5
53
54
6
3
35
1.42
4213926--4213994
21
3.4
20
71
16
70
55
7
1
36
1.37
4218038--4218076
18
2.2
17
86
13
53
33
0
20
46
1.51
4218301--4218398
23
4.3
23
90
2
162
20
21
26
31
1.98
4218303--4218391
45
2.0
45
95
0
160
19
22
26
31
1.97
4223125--4223156
8
4.0
8
91
0
55
25
15
9
50
1.74
4238835--4238879
19
2.4
19
78
10
56
24
6
0
68
1.13
4238843--4238887
19
2.3
20
88
7
67
31
4
0
64
1.13
4244904--4244938
6
5.8
6
100
0
70
34
14
51
0
1.42
4254793--4254911
58
2.0
59
95
1
213
47
10
9
32
1.69
4262332--4262372
21
2.0
21
81
18
50
31
19
26
21
1.97
4280287--4280506
96
2.3
97
84
9
278
44
2
14
38
1.59
4280557--4281094
126
4.3
126
90
1
819
33
18
21
26
1.96
4280549--4281094
251
2.2
251
89
1
826
33
18
21
26
1.96
4283384--4283435
11
4.9
11
79
9
63
42
0
26
30
1.56
4283384--4283434
20
2.5
20
87
6
66
41
0
27
31
1.56
4283384--4283447
31
2.1
31
82
5
76
42
0
25
32
1.55
4284962--4284991
2
14.5
2
93
6
51
50
46
0
3
1.18
4290828--4290862
15
2.3
15
85
14
54
62
0
0
37
0.95
4323934--4324395
111
4.1
111
87
3
620
22
27
22
27
1.99
4325631--4325667
6
6.7
6
85
14
53
89
10
0
0
0.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4325631--4325666
16
2.2
16
100
0
72
88
11
0
0
0.50
4330276--4330335
31
2.0
29
83
6
75
61
8
5
25
1.44
4339125--4339182
29
2.0
29
100
0
116
41
13
20
24
1.89
4345482--4345716
114
2.1
114
94
0
407
29
23
8
38
1.85
4348382--4348418
17
2.2
17
90
0
56
29
13
5
51
1.63
4352184--4352213
14
2.1
14
93
0
51
46
36
0
16
1.47
4354988--4355063
31
2.4
31
82
6
91
60
3
0
35
1.15
4354994--4355053
23
2.7
23
71
16
56
63
1
0
35
1.05
4359208--4359368
44
3.5
44
82
11
214
33
13
20
32
1.92
4359215--4359371
51
3.2
49
81
12
198
34
12
21
31
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325