genome.fa.s5.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  92  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30569638--30569689	7	7.4	7	88	0	77	55	11	1	30	1.46
30569825--30569869	20	2.3	19	81	11	54	48	4	4	42	1.43
30570616--30570695	24	3.1	27	68	15	80	60	2	6	31	1.35
30570611--30570711	49	2.0	50	90	1	159	58	2	5	32	1.37
30570861--30570905	22	2.0	22	91	8	74	35	0	24	40	1.56
30572979--30573011	16	1.9	18	88	11	52	51	0	0	48	1.00
30574418--30574566	25	5.9	24	71	9	100	30	6	4	59	1.40
30574523--30574593	36	1.9	37	82	2	90	25	2	5	66	1.27
30574389--30574566	52	3.4	49	71	10	140	29	8	3	58	1.44
30574511--30574631	63	2.0	61	81	6	145	26	4	4	65	1.29
30575367--30575413	19	2.4	19	89	3	76	53	17	8	21	1.70
30575440--30575585	27	5.7	26	82	11	176	30	3	1	64	1.18
30581692--30581884	89	2.2	89	85	0	260	34	18	17	29	1.94
30581781--30582033	133	1.9	133	85	1	355	30	18	21	30	1.97
30581755--30582036	44	6.4	44	68	6	156	32	17	20	29	1.95
30581913--30582089	89	2.0	89	82	2	212	33	15	19	30	1.93
30581690--30582115	222	1.9	222	80	3	500	33	17	19	29	1.95
30582182--30582360	45	3.8	45	77	8	187	35	15	18	30	1.91
30582178--30582643	96	4.9	96	74	9	367	33	17	19	29	1.95
30582179--30582458	51	5.8	49	70	13	186	33	17	18	29	1.94
30581991--30582654	286	2.3	286	80	5	722	33	17	19	29	1.95
30582623--30582722	44	2.3	44	81	10	107	33	21	22	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30584501--30584687	27	7.1	26	81	11	195	30	4	1	63	1.23
30584548--30584597	21	2.5	20	78	15	57	32	2	0	66	1.03
30586647--30586712	25	2.6	25	85	0	96	7	31	19	40	1.80
30586733--30586815	36	2.3	36	91	0	139	15	14	12	57	1.65
30594245--30594306	29	2.2	28	80	11	72	67	1	4	25	1.19
30599546--30599704	37	4.3	38	76	13	170	38	19	19	22	1.94
30602509--30602542	17	2.1	16	89	10	52	47	0	8	44	1.34
30603667--30603847	24	7.5	24	89	1	274	23	13	30	32	1.93
30603668--30603872	24	8.5	24	84	4	109	23	13	31	31	1.93
30611287--30611443	24	6.5	24	86	2	210	23	14	30	31	1.94
30611287--30611443	48	3.3	48	91	1	244	23	14	30	31	1.94
30611287--30611467	72	2.5	72	85	3	231	23	13	30	31	1.94
30611288--30611468	24	7.5	24	83	4	104	24	13	30	30	1.94
30611287--30611467	48	3.8	47	85	4	211	23	13	30	31	1.94
30613078--30613603	44	11.9	44	73	5	339	30	23	15	30	1.95
30613085--30613601	89	5.9	88	80	4	427	30	23	16	30	1.96
30613357--30613604	133	1.9	134	80	0	291	31	22	15	31	1.95
30615516--30615623	43	2.5	43	79	4	121	31	16	24	27	1.96
30625665--30625720	22	2.5	22	94	0	94	21	33	30	14	1.93
30626470--30626513	18	2.4	18	88	0	61	40	15	11	31	1.83
30627743--30627782	19	2.0	20	86	13	57	5	17	2	75	1.10
30627743--30627794	18	2.8	19	83	13	56	5	15	3	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30627804--30627828	13	1.9	13	100	0	50	60	0	0	40	0.97
30632545--30632652	26	4.2	26	92	0	180	36	23	7	33	1.83
30636438--30636510	32	2.3	30	84	11	85	50	5	4	39	1.44
30647514--30647562	8	6.1	8	88	9	64	69	0	0	30	0.89
30650521--30650882	131	2.8	130	84	3	402	32	17	19	30	1.95
30653806--30653970	87	1.9	87	92	0	276	29	23	17	29	1.97
30653989--30654307	44	7.3	43	87	5	426	26	29	16	27	1.97
30653989--30654307	132	2.4	132	89	1	478	26	29	16	27	1.97
30653991--30654345	44	8.1	44	85	3	241	27	28	16	27	1.97
30665907--30666145	130	1.8	130	86	1	345	32	20	20	25	1.97
30669692--30669729	19	2.0	19	85	10	51	55	28	0	15	1.41
30671490--30671534	12	3.6	13	77	16	51	55	0	4	40	1.20
30671911--30671939	9	3.2	9	100	0	58	62	0	13	24	1.32
30672684--30672876	50	3.8	51	71	8	162	30	10	19	39	1.86
30674939--30674978	19	2.1	19	100	0	80	35	10	10	45	1.71
30675736--30675780	11	3.8	11	81	16	54	17	2	4	75	1.07
30677736--30677840	37	2.8	38	74	9	101	27	24	17	30	1.97
30680095--30680151	28	2.0	28	96	0	105	26	19	15	38	1.92
30690733--30690792	30	2.0	31	86	3	86	38	20	26	15	1.91
30695235--30695270	3	12.0	3	87	0	54	30	2	36	30	1.72
30695843--30695867	12	2.1	12	100	0	50	60	8	0	32	1.26
30706013--30706055	20	2.0	22	91	8	72	60	2	0	37	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30706013--30706063	20	2.4	21	87	12	70	60	3	0	35	1.15
30706019--30706062	21	2.1	21	87	8	63	63	4	0	31	1.14
30709899--30709940	14	2.9	15	75	13	52	28	11	0	59	1.33
30710334--30710419	30	2.9	30	98	0	163	29	0	12	58	1.35
30713043--30713080	20	1.9	20	88	0	58	60	10	2	26	1.43
30714945--30715013	30	2.3	30	89	0	120	26	50	5	17	1.68
30714955--30715008	18	3.3	18	66	28	57	22	48	7	22	1.75
30715496--30715547	24	2.2	23	83	10	61	36	3	0	59	1.16
30715573--30715632	25	2.4	26	80	8	79	36	5	1	56	1.31
30715590--30715698	28	4.0	28	75	13	104	31	6	4	57	1.44
30715649--30715711	25	2.5	24	84	7	72	30	4	6	58	1.43
30715654--30715725	25	2.8	25	77	10	67	30	5	4	59	1.39
30715772--30715827	25	2.3	24	79	14	62	37	16	3	42	1.65
30722711--30722821	30	3.7	30	73	21	81	43	10	0	45	1.45
30723688--30723717	6	5.0	6	100	0	60	0	16	0	83	0.65
30723818--30723854	4	9.2	4	100	0	74	24	0	24	51	1.49
30728699--30728745	22	2.2	21	85	14	62	46	8	17	27	1.76
30728729--30728774	11	4.4	11	81	8	51	45	0	26	28	1.54
30728922--30729002	38	2.1	38	81	4	90	25	29	25	18	1.98
30730902--30730978	39	2.0	39	89	0	118	37	20	5	36	1.75
30730904--30730977	26	2.8	26	72	0	76	36	21	5	36	1.77
30748591--30748634	22	2.0	22	86	0	61	34	11	11	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30748613--30748657	18	2.5	18	85	0	63	33	17	15	33	1.92
30749462--30749526	22	3.0	21	77	4	58	6	13	6	73	1.21
30775087--30775142	15	3.7	15	74	9	60	41	28	5	25	1.77
30775287--30775325	16	2.4	17	83	12	55	64	15	0	20	1.30
30776583--30776612	11	2.6	12	89	10	53	76	0	23	0	0.78
30786035--30786367	48	6.9	48	97	0	603	33	6	28	30	1.83
30786488--30786590	37	2.8	37	96	0	188	23	20	32	24	1.98
30787653--30787939	127	2.3	127	79	2	310	39	18	16	25	1.91
30788067--30788120	23	2.5	23	82	8	60	61	7	0	31	1.24
30788288--30788354	21	3.0	23	76	21	72	64	0	5	29	1.17
30788321--30788366	15	2.9	15	90	6	65	67	0	6	26	1.15
30788336--30788437	14	7.2	13	72	25	59	64	1	7	25	1.31
30788331--30788452	29	4.2	30	69	16	76	63	1	7	27	1.30
30788385--30788449	23	2.8	23	70	23	55	64	3	6	26	1.32
30795995--30796034	18	2.0	20	86	13	57	30	0	5	65	1.14
30796695--30796815	60	2.0	61	98	1	235	32	16	14	36	1.90
30797732--30797802	19	3.5	19	73	14	70	45	5	8	40	1.58
30797734--30797805	20	3.2	25	61	35	63	45	5	6	41	1.54
30797741--30797812	22	3.4	22	74	14	87	45	6	8	38	1.61
30797733--30797816	42	2.0	42	100	0	168	47	7	7	38	1.58
30803001--30803052	26	2.0	26	84	0	68	30	13	28	26	1.94
30807441--30807505	11	5.9	12	74	15	52	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30811739--30811771	14	2.3	15	89	5	50	27	0	0	72	0.85
30819938--30819973	17	2.1	17	94	0	63	19	0	30	50	1.48
30824103--30824261	6	25.7	6	71	11	79	19	10	15	55	1.68
30824097--30824261	12	13.8	12	69	12	90	20	10	14	55	1.68
30824258--30824294	16	2.3	16	100	0	74	24	8	16	51	1.71
30824687--30824782	45	2.1	45	81	7	115	31	17	22	28	1.97
30824516--30824881	178	2.1	179	88	0	536	31	17	21	29	1.96
30824898--30825655	44	17.2	43	64	17	238	33	21	23	21	1.97
30824885--30825683	88	9.1	88	93	0	1276	33	21	23	21	1.97
30829288--30829360	36	2.0	36	97	0	137	30	16	15	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325