Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  131  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40892475--40892813
43
7.9
43
81
2
342
28
13
27
30
1.94
40892482--40892719
86
2.8
86
95
0
413
27
12
28
31
1.93
40892475--40892724
129
1.9
129
93
0
428
28
12
28
30
1.93
40892475--40892766
129
2.3
129
89
1
415
27
14
28
30
1.95
40898691--40898787
50
1.9
50
97
0
185
43
20
8
27
1.80
40898951--40899052
51
2.0
51
100
0
204
41
21
13
23
1.89
40906150--40906222
27
2.7
27
79
10
78
41
23
21
13
1.89
40919286--40919424
39
3.6
39
94
0
224
28
26
20
23
1.99
40927518--40927653
39
3.5
39
91
0
209
31
25
18
24
1.97
40931061--40931123
30
2.1
30
87
0
90
22
6
14
57
1.60
40957456--40957725
27
10.1
27
80
3
258
31
21
16
30
1.96
40957456--40957725
81
3.4
81
79
3
285
31
21
16
30
1.96
40964888--40964938
21
2.4
21
90
0
84
41
9
17
31
1.82
40972071--40972122
25
2.1
25
100
0
104
38
3
17
40
1.68
40972075--40972131
25
2.3
25
90
6
89
40
3
15
40
1.65
40972333--40972371
16
2.4
16
91
0
60
48
2
2
46
1.29
40978250--40978328
35
2.3
35
91
2
124
32
27
22
16
1.96
40979009--40979075
35
1.9
35
81
6
82
26
25
20
26
1.99
40980921--40980967
20
2.4
19
86
10
60
27
0
2
70
0.99
40993795--40993865
35
2.0
35
97
0
133
23
2
19
53
1.58
40994596--40994778
40
4.6
40
81
2
215
27
22
25
25
2.00
41001430--41001524
47
2.0
47
89
0
145
37
21
14
26
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41002947--41002989
22
2.0
22
85
0
59
30
16
37
16
1.91
41002971--41003006
13
2.8
13
91
0
54
33
5
44
16
1.71
41016346--41016387
21
2.0
21
90
0
66
40
2
2
54
1.26
41018780--41018832
26
2.0
27
85
7
74
24
15
22
37
1.92
41020317--41020424
26
4.2
26
91
2
173
36
23
7
33
1.83
41021373--41021416
23
2.0
22
81
4
52
72
2
9
15
1.19
41028623--41028757
40
3.4
39
84
6
173
23
23
26
25
2.00
41035303--41035513
103
2.1
103
99
0
415
31
16
9
42
1.80
41035760--41036263
41
12.3
41
90
0
783
22
28
20
29
1.98
41035766--41036263
82
6.1
82
100
0
996
22
28
20
29
1.98
41036475--41036511
19
1.9
19
94
0
65
45
18
0
35
1.50
41039775--41039956
40
4.6
40
90
2
278
23
24
26
25
2.00
41047256--41047301
23
2.0
23
100
0
92
21
13
43
21
1.86
41050299--41050358
29
2.1
29
96
0
111
23
31
5
40
1.76
41052769--41052796
14
2.0
14
100
0
56
42
28
14
14
1.84
41055256--41055285
5
6.0
5
96
0
51
16
0
3
80
0.85
41064194--41064513
41
7.8
41
97
0
597
26
19
22
31
1.98
41066457--41066498
20
2.1
21
86
8
61
26
9
16
47
1.77
41069092--41069149
29
2.0
30
86
3
82
20
37
31
10
1.86
41073441--41073477
15
2.5
14
91
8
56
67
2
8
21
1.29
41075292--41075349
30
1.9
30
96
0
107
55
6
12
25
1.61
41078005--41078071
33
2.0
33
85
0
89
25
16
20
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41084328--41084385
19
3.1
18
87
7
80
55
0
0
44
0.99
41084328--41084385
9
6.1
9
88
8
80
55
0
0
44
0.99
41084757--41084835
10
8.1
10
71
5
63
31
3
1
63
1.20
41084782--41084819
19
2.1
19
85
5
51
34
2
0
63
1.09
41084753--41084835
29
2.9
28
83
8
96
32
3
1
62
1.20
41084897--41084939
17
2.4
17
80
7
50
44
0
2
53
1.13
41096851--41096894
19
2.4
19
85
7
56
50
0
9
40
1.34
41099336--41099461
27
4.4
27
70
24
80
28
20
26
24
1.99
41099300--41099438
60
2.3
59
82
8
156
29
20
23
25
1.99
41100351--41100451
49
2.1
49
94
0
175
26
9
32
30
1.89
41102587--41102634
6
7.5
6
84
11
60
77
4
0
18
0.93
41102590--41102634
20
2.3
20
88
3
65
75
4
0
20
0.97
41102591--41102637
14
3.5
14
82
11
55
76
4
0
19
0.95
41102654--41102720
9
7.6
9
83
3
91
26
7
17
47
1.74
41102654--41102720
26
2.5
27
92
2
109
26
7
17
47
1.74
41104919--41104978
20
3.3
18
69
17
52
35
1
0
63
1.05
41106093--41106253
59
2.7
59
81
4
184
49
13
9
27
1.73
41110840--41110883
15
2.9
16
80
10
56
56
4
2
36
1.32
41111046--41111082
17
2.2
18
90
9
60
56
0
0
43
0.99
41111086--41111111
13
2.0
13
100
0
52
53
0
0
46
1.00
41111823--41111856
12
2.8
12
90
0
50
67
0
0
32
0.91
41112456--41112494
13
3.1
13
85
3
53
69
2
2
25
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41112602--41112635
17
2.0
17
100
0
68
52
5
0
41
1.25
41117334--41117525
63
3.1
61
79
6
206
28
19
27
25
1.99
41117568--41117764
108
1.8
108
89
0
313
22
19
29
27
1.98
41135064--41135178
7
16.4
7
87
7
162
14
26
12
46
1.80
41137685--41137730
22
2.1
23
88
8
69
45
0
23
30
1.53
41138966--41139047
41
2.0
41
97
0
155
35
17
21
25
1.95
41139892--41139920
14
2.0
15
93
6
51
58
0
0
41
0.98
41141239--41141439
26
7.6
24
72
16
107
61
3
5
28
1.37
41141239--41141454
27
8.2
25
75
13
168
61
3
6
28
1.37
41141239--41141446
56
3.9
53
81
5
197
62
3
6
27
1.37
41141493--41141587
29
3.4
26
76
20
86
63
2
5
29
1.28
41154057--41154376
46
7.0
46
89
0
426
41
14
23
21
1.89
41154657--41154689
17
2.0
17
94
5
59
48
0
15
36
1.45
41162133--41162204
39
1.9
37
86
8
101
47
11
6
34
1.66
41175264--41175296
11
3.1
11
95
4
59
39
0
0
60
0.97
41175297--41175341
18
2.6
18
80
16
58
66
13
0
20
1.24
41175419--41175475
30
1.9
29
85
3
78
56
8
7
28
1.56
41181414--41181452
18
2.1
19
85
4
53
43
15
12
28
1.83
41187664--41187717
21
2.6
21
82
5
74
37
7
22
33
1.82
41187704--41187745
20
2.1
20
86
0
57
28
9
19
42
1.82
41192851--41192892
23
1.9
21
85
9
57
35
0
16
47
1.47
41192863--41192892
10
2.9
10
95
5
51
36
0
13
50
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41193770--41193795
12
2.2
12
100
0
52
34
0
15
50
1.45
41194277--41194333
20
2.8
20
72
15
55
17
24
15
42
1.88
41200178--41200214
14
2.8
14
84
8
51
64
0
0
35
0.94
41200418--41200452
17
2.1
17
88
0
52
54
5
0
40
1.24
41200822--41200921
35
2.9
35
85
4
132
38
17
24
21
1.93
41202963--41203002
15
2.7
15
96
0
71
15
15
5
65
1.44
41204320--41204398
20
4.0
20
83
8
99
55
2
1
40
1.21
41204320--41204398
39
2.0
39
85
4
106
55
2
1
40
1.21
41204325--41204407
19
4.3
19
84
7
80
57
1
1
39
1.14
41204320--41204405
38
2.2
39
83
6
104
56
2
1
39
1.19
41213179--41213210
3
10.7
3
100
0
64
31
0
0
68
0.90
41216725--41216812
44
2.0
44
86
0
122
32
28
15
22
1.95
41218775--41218836
31
2.0
31
100
0
124
54
22
3
19
1.58
41219476--41219750
49
5.7
48
76
10
222
23
29
19
28
1.98
41219478--41219753
98
2.8
97
82
7
294
23
29
19
27
1.98
41221771--41221811
19
2.0
21
90
9
68
51
0
19
29
1.47
41222522--41222607
33
2.6
33
78
8
104
34
10
23
31
1.88
41225805--41226029
40
5.7
40
81
6
215
25
28
21
25
1.99
41225961--41226038
40
1.9
41
82
10
97
26
28
20
24
1.99
41226991--41227023
11
2.8
12
86
9
50
51
9
30
9
1.64
41233322--41233544
40
5.6
38
79
10
182
25
27
21
26
1.99
41233476--41233553
40
1.9
41
82
10
97
26
28
20
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41240409--41240731
49
6.8
47
71
14
171
26
29
17
27
1.98
41241458--41241816
180
2.0
178
96
1
664
30
16
15
38
1.89
41244207--41244272
24
2.7
25
81
4
82
24
15
25
34
1.94
41246737--41246859
10
13.4
9
70
16
76
62
2
0
34
1.08
41246774--41246811
11
3.5
11
82
7
51
65
5
0
28
1.14
41246795--41246862
17
4.0
17
77
7
84
64
0
0
35
0.94
41246753--41246862
34
3.0
35
77
11
96
61
2
0
35
1.10
41247298--41247339
10
4.1
10
80
17
50
40
2
2
54
1.26
41247286--41247337
21
2.5
21
80
17
56
38
1
3
55
1.29
41253570--41253617
22
2.2
22
92
0
78
37
29
29
4
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325