genome.fa.s5.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  160  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50671234--50671367	54	2.5	54	80	10	141	32	13	14	40	1.84
50671234--50671394	81	2.0	81	82	2	198	29	14	16	39	1.88
50679185--50679229	20	2.2	20	88	0	63	48	2	13	35	1.54
50686134--50686417	40	7.1	40	93	1	446	25	28	24	22	2.00
50694270--50694374	41	2.6	41	81	4	113	22	29	26	20	1.99
50706284--50706571	39	7.1	39	79	13	321	22	30	25	21	1.99
50706347--50706453	54	2.0	51	94	5	187	21	32	22	23	1.98
50706309--50706485	92	1.9	91	96	3	329	21	31	25	22	1.98
50706284--50706530	130	1.9	129	93	4	426	22	30	24	21	1.99
50706396--50706571	77	2.3	76	95	2	318	22	30	24	22	1.99
50712151--50712261	39	2.8	39	88	0	168	25	27	26	20	1.99
50712180--50712357	95	1.9	96	95	1	322	23	27	25	23	2.00
50712267--50712482	39	5.6	39	92	0	344	24	28	24	23	1.99
50712150--50712396	134	1.8	134	90	0	395	24	27	25	22	2.00
50719786--50719855	35	2.0	35	88	0	104	31	24	4	40	1.74
50720962--50721029	26	2.6	27	78	4	75	41	22	16	20	1.90
50721059--50721111	27	2.0	27	88	0	79	24	18	20	35	1.95
50723285--50723320	17	2.1	18	89	5	56	41	5	5	47	1.50
50727087--50727162	27	2.8	27	87	0	98	38	19	13	28	1.90
50727171--50727281	53	2.1	53	81	3	134	38	16	18	26	1.92
50727231--50727300	27	2.6	27	83	0	104	31	22	20	25	1.98
50730956--50731032	28	2.8	26	78	9	66	36	18	15	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50731012--50731123	27	4.2	27	75	2	100	32	17	22	27	1.97
50741338--50741373	12	3.3	11	88	11	56	66	0	0	33	0.92
50743622--50743665	20	2.2	20	95	0	79	11	34	34	20	1.88
50745111--50745180	21	3.2	21	62	18	52	38	25	15	20	1.92
50753133--50753311	85	2.1	85	98	0	349	37	8	27	26	1.85
50755481--50755867	47	8.1	47	87	4	531	32	12	29	26	1.92
50755481--50755867	98	4.0	97	89	3	561	32	12	29	26	1.92
50755481--50755860	145	2.6	143	83	7	518	32	12	29	26	1.92
50755677--50755751	23	3.2	23	62	23	57	29	10	32	28	1.90
50755841--50755931	46	2.0	46	84	0	119	32	9	31	25	1.89
50755481--50755916	145	3.0	140	83	6	448	32	11	29	26	1.92
50756078--50756222	37	3.9	37	96	0	254	24	19	31	25	1.98
50757487--50757875	40	9.8	40	92	1	631	24	22	28	24	2.00
50758085--50758193	57	1.9	57	86	1	155	23	20	28	27	1.99
50761972--50762358	47	8.1	47	86	6	508	31	12	29	26	1.92
50761972--50762358	98	4.0	97	88	6	556	31	12	29	26	1.92
50761972--50762358	145	2.7	142	81	10	507	31	12	29	26	1.92
50762332--50762422	46	2.0	46	84	0	119	32	9	31	25	1.89
50762570--50762710	37	3.8	37	96	0	246	24	18	31	25	1.98
50764682--50764762	40	2.0	40	88	4	119	23	14	27	34	1.94
50775047--50775077	16	1.9	16	100	0	62	6	19	35	38	1.77
50778772--50778804	14	2.3	15	89	5	50	45	48	3	3	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50779538--50779665	48	2.7	47	81	7	152	24	30	17	27	1.97
50785127--50785223	50	1.9	50	97	0	185	29	26	11	31	1.91
50785139--50785220	27	3.2	27	61	25	68	30	29	10	29	1.91
50789488--50789659	93	1.8	93	89	0	272	29	27	20	23	1.99
50789479--50789655	46	3.8	46	76	10	189	29	26	19	23	1.98
50791279--50791334	28	2.0	28	86	10	78	23	42	19	14	1.88
50793255--50793348	25	3.8	25	87	1	136	23	21	26	28	1.99
50793553--50793770	27	8.1	27	82	8	237	26	20	17	35	1.95
50793552--50793765	81	2.6	80	85	6	279	25	20	18	35	1.95
50793552--50793765	54	4.0	54	91	0	320	25	20	18	35	1.95
50793646--50794022	27	13.9	26	79	9	247	28	11	19	39	1.87
50793793--50794022	87	2.7	87	85	5	294	30	8	20	41	1.81
50794014--50794305	27	10.8	27	93	0	431	40	7	21	29	1.82
50793820--50794033	114	1.9	114	84	2	286	30	7	20	40	1.81
50793793--50794046	141	1.8	141	83	5	343	31	7	20	40	1.81
50794014--50794305	54	5.4	54	94	0	494	40	7	21	29	1.82
50794014--50794305	81	3.6	81	95	0	503	40	7	21	29	1.82
50801081--50801118	18	2.2	18	86	13	53	60	15	2	21	1.47
50801399--50801437	20	2.0	19	85	5	51	41	12	20	25	1.88
50804073--50804177	53	2.0	53	81	7	124	20	26	17	36	1.94
50811228--50811429	53	3.7	54	79	2	208	19	22	19	37	1.94
50811239--50811421	55	3.4	53	80	2	168	20	22	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50813102--50813186	44	1.9	44	85	0	116	22	16	27	34	1.95
50818301--50818443	48	3.0	48	76	1	153	25	27	17	29	1.97
50821986--50822021	18	2.0	18	100	0	72	27	11	38	22	1.88
50823520--50823608	44	2.0	44	95	0	160	33	15	13	37	1.87
50824122--50824199	28	2.8	28	86	0	111	33	11	25	29	1.91
50825638--50825766	47	2.7	48	82	7	165	23	28	19	28	1.98
50825448--50825766	94	3.5	92	77	12	314	21	29	21	27	1.98
50832161--50832218	30	1.9	30	85	0	80	17	32	27	22	1.96
50832882--50833203	94	3.4	94	77	13	306	20	30	21	28	1.98
50832882--50833199	47	6.7	47	72	17	146	20	29	21	28	1.98
50838001--50838051	24	2.1	24	96	0	93	45	27	3	23	1.70
50839200--50839283	40	2.1	40	82	4	98	25	16	25	33	1.96
50839319--50839386	28	2.4	28	97	0	127	30	13	26	29	1.94
50841338--50841423	45	1.9	45	90	0	136	37	24	12	25	1.91
50846077--50846111	16	2.2	16	100	0	70	57	0	0	42	0.99
50856085--50856207	44	2.8	45	90	5	196	27	25	23	23	2.00
50856077--50856207	45	2.9	45	88	4	203	27	26	22	22	1.99
50863659--50863835	45	3.9	45	89	2	266	27	28	20	23	1.99
50871064--50871101	16	2.4	16	86	8	51	23	2	0	73	0.95
50872910--50872951	21	2.0	21	100	0	84	28	14	9	47	1.75
50881562--50881672	51	2.1	52	81	6	136	48	18	19	12	1.80
50882957--50883413	45	10.3	43	68	11	156	30	17	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50883489--50883589	44	2.3	45	82	5	125	25	17	24	31	1.97
50883667--50883775	44	2.4	45	77	4	123	28	18	22	30	1.97
50882886--50883820	178	5.3	178	86	0	1210	30	17	25	26	1.97
50886095--50886134	16	2.5	16	88	11	64	22	2	0	75	0.93
50886106--50886143	16	2.4	16	86	8	51	23	2	0	73	0.95
50887063--50887095	12	2.6	13	85	9	50	9	45	0	45	1.35
50888302--50888364	28	2.2	29	88	8	94	22	22	23	31	1.98
50888312--50888375	28	2.2	28	86	2	83	25	25	18	31	1.98
50889454--50889487	10	3.3	10	84	8	50	29	8	8	52	1.62
50894829--50894861	12	2.6	13	85	9	50	9	45	0	45	1.35
50896068--50896158	28	3.2	28	84	4	121	23	23	21	31	1.98
50896611--50896651	18	2.3	18	86	0	55	24	2	4	68	1.22
50900866--50901003	28	4.9	28	97	0	249	35	18	26	20	1.95
50903241--50903270	9	3.3	9	90	0	51	66	6	0	26	1.16
50908859--50908918	30	2.0	30	90	0	93	38	8	25	28	1.84
50909319--50909494	46	3.8	46	73	16	166	21	19	28	30	1.97
50909315--50909487	93	1.9	93	92	2	294	21	19	29	29	1.98
50914569--50914696	46	2.7	48	80	11	149	27	17	28	26	1.97
50919752--50919892	60	2.4	59	83	9	171	27	26	19	25	1.99
50928139--50928303	47	3.5	48	80	5	176	25	15	27	32	1.95
50928169--50928367	94	2.1	95	81	4	233	25	15	29	30	1.95
50930684--50930783	48	2.1	48	94	0	173	25	9	18	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50933200--50933262	26	2.3	27	83	8	83	36	25	11	26	1.90
50933370--50933454	27	3.1	27	80	5	100	18	21	21	38	1.93
50939931--50939984	18	3.1	18	78	2	56	3	31	0	64	1.11
50941198--50941282	27	3.1	27	81	5	109	20	22	21	36	1.95
50943406--50943503	46	2.1	46	83	3	117	25	15	28	30	1.96
50944829--50944980	43	3.5	43	78	7	148	28	17	21	32	1.96
50961561--50961636	40	1.9	40	91	0	125	19	15	31	32	1.94
50961649--50961723	28	2.7	28	82	0	87	25	10	34	29	1.90
50964277--50964405	37	3.5	37	86	6	192	27	17	29	26	1.97
50964391--50964639	84	2.9	83	76	8	205	28	16	26	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325