genome.fa.s5.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  130  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40544613--40544670	29	2.0	29	100	0	116	37	13	17	31	1.89
40546179--40546269	44	2.1	44	97	0	173	28	3	25	42	1.70
40546653--40546686	15	2.3	15	90	10	52	20	20	29	29	1.98
40547671--40547770	46	2.2	46	85	1	128	24	18	21	37	1.94
40547656--40547770	47	2.5	47	83	4	137	24	17	20	37	1.94
40558093--40558262	86	2.0	86	97	0	322	40	15	18	25	1.90
40570629--40570701	37	2.0	37	97	0	137	26	34	9	30	1.88
40573946--40574039	44	2.2	43	85	7	122	22	14	28	34	1.94
40574188--40574266	40	2.0	40	94	0	140	40	6	18	34	1.76
40574200--40574270	19	3.7	19	71	15	65	39	5	19	35	1.76
40578052--40578114	32	2.0	32	96	0	117	31	20	22	25	1.98
40581845--40581879	17	2.1	17	100	0	70	37	5	11	45	1.64
40593024--40593061	19	2.0	20	85	15	53	39	23	0	36	1.55
40593290--40593455	46	3.6	46	76	11	185	30	27	18	23	1.97
40596945--40597130	46	3.9	48	74	9	168	23	30	19	26	1.98
40603381--40603423	22	1.9	23	86	13	63	27	9	11	51	1.69
40604060--40604117	30	2.0	29	83	10	73	48	12	8	31	1.70
40604071--40604148	31	2.6	30	83	6	86	43	14	10	32	1.78
40607362--40607421	19	3.1	19	75	13	68	36	20	30	13	1.90
40607345--40607405	19	3.2	20	71	15	56	29	18	36	16	1.92
40607328--40607454	39	3.3	39	87	1	175	33	18	29	17	1.94
40615527--40615567	20	2.0	20	100	0	82	39	9	4	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40623494--40623532	18	2.2	18	95	0	69	58	10	2	28	1.44
40623566--40623629	29	2.2	29	91	5	103	28	23	4	43	1.73
40629756--40629818	21	3.0	21	80	0	72	25	33	30	11	1.90
40631042--40631212	43	4.0	43	76	6	168	28	14	23	33	1.94
40632000--40632092	47	2.0	47	86	0	132	17	34	23	24	1.96
40633296--40633361	19	3.6	18	78	13	71	71	6	0	22	1.08
40633299--40633361	17	3.4	17	76	19	56	71	6	0	22	1.08
40635876--40635933	20	2.9	20	97	0	107	20	31	36	12	1.89
40639546--40639655	31	3.5	31	86	0	139	31	25	13	29	1.94
40639876--40639945	25	2.8	25	95	0	122	25	22	24	27	2.00
40640758--40640836	27	2.9	26	83	7	95	21	26	21	30	1.98
40640877--40641164	27	10.6	26	76	9	202	29	9	21	39	1.85
40641192--40641395	81	2.5	81	90	0	327	40	8	23	27	1.84
40641194--40641395	27	7.5	27	90	0	296	40	8	22	27	1.84
40643693--40643802	31	3.6	31	90	1	168	30	22	18	29	1.97
40644027--40644117	25	3.6	25	93	0	146	23	24	27	25	2.00
40645345--40645704	27	13.3	27	78	5	199	31	9	20	38	1.85
40645456--40645664	80	2.6	81	84	2	260	28	9	22	40	1.84
40645629--40645866	54	4.4	54	85	2	208	40	8	20	30	1.82
40645458--40645704	134	1.8	134	79	3	282	30	8	22	38	1.85
40645654--40645866	27	7.9	27	86	2	266	41	8	20	29	1.82
40645663--40645866	54	3.8	54	88	0	300	42	8	20	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40647199--40647259	30	2.1	29	90	3	95	37	21	14	26	1.92
40656859--40656900	6	7.3	6	83	5	52	78	2	0	19	0.86
40658461--40658511	3	17.0	3	88	8	77	70	0	0	29	0.87
40658443--40658507	31	2.1	31	83	11	80	70	1	3	24	1.10
40658896--40658930	17	2.1	17	94	0	61	45	0	54	0	0.99
40661820--40661846	14	1.9	14	100	0	54	25	7	29	37	1.83
40665277--40665308	15	2.1	15	100	0	64	46	18	6	28	1.73
40669987--40670089	47	2.2	47	82	3	136	25	15	21	37	1.92
40676314--40676575	47	5.6	47	71	12	234	30	26	18	24	1.98
40676267--40676625	93	3.9	93	91	0	558	29	26	19	24	1.98
40676260--40676617	46	7.7	46	68	17	231	30	26	18	24	1.98
40676272--40676625	186	1.9	186	94	1	620	29	26	19	24	1.98
40683326--40683369	22	2.0	22	82	8	54	4	13	2	79	0.98
40704446--40704475	4	7.5	4	100	0	60	23	23	53	0	1.46
40705560--40705591	16	2.0	16	93	0	55	59	3	6	31	1.38
40709431--40709516	43	2.0	43	95	0	154	43	22	13	20	1.87
40711393--40711557	46	3.5	45	75	8	159	24	18	21	35	1.95
40711434--40711594	48	3.4	47	74	11	150	24	16	20	38	1.92
40711393--40711617	94	2.4	94	85	1	290	27	17	20	35	1.94
40714109--40714158	24	2.1	24	92	0	82	30	24	8	38	1.84
40721691--40721788	42	2.3	42	77	5	108	35	23	14	26	1.93
40721671--40721829	43	3.7	43	76	9	146	32	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40726514--40726602	43	2.1	42	87	6	126	26	16	24	31	1.97
40734175--40734236	3	20.7	3	76	15	58	33	0	1	64	1.03
40734184--40734224	13	3.1	13	92	3	64	34	0	0	65	0.93
40737745--40737784	20	2.0	20	90	0	62	27	10	12	50	1.72
40737730--40737796	34	1.9	35	90	3	109	31	8	13	46	1.74
40737724--40737800	14	5.0	15	71	20	52	33	9	14	42	1.77
40747295--40747481	76	2.5	75	80	6	191	34	16	19	29	1.94
40747446--40747852	88	4.6	89	79	7	357	28	17	18	35	1.94
40747446--40747778	92	3.7	88	81	5	346	28	18	18	34	1.94
40748974--40749033	28	2.1	28	87	0	84	35	5	26	33	1.78
40754384--40754446	28	2.2	28	88	0	90	33	6	30	30	1.82
40755196--40755272	38	2.0	38	100	0	154	27	0	25	46	1.53
40755693--40755836	42	3.4	42	79	8	123	25	16	23	34	1.95
40755693--40755811	42	2.8	43	82	6	125	26	15	23	34	1.95
40758124--40758207	41	2.1	40	82	10	100	45	1	4	48	1.31
40758354--40758425	28	2.6	27	78	10	74	69	5	23	1	1.17
40759301--40759411	40	2.8	40	86	2	143	37	11	18	32	1.87
40779937--40780112	40	4.4	40	82	5	205	23	20	28	27	1.99
40787971--40788079	40	2.7	40	89	0	173	24	23	27	23	2.00
40787975--40788112	40	3.5	40	84	6	165	24	23	28	23	2.00
40798577--40798653	33	2.3	33	82	4	93	18	15	36	29	1.92
40798747--40798782	17	2.1	18	89	5	56	13	30	44	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40804206--40804354	29	5.1	28	82	1	172	38	14	24	22	1.91
40804201--40804354	58	2.7	58	91	0	245	38	14	24	22	1.92
40804206--40804385	87	2.1	88	84	3	229	40	13	22	23	1.90
40810255--40810314	27	2.2	27	85	5	77	50	3	1	45	1.28
40814289--40814329	9	4.6	9	84	9	57	34	2	19	43	1.64
40814527--40814572	21	2.2	20	84	3	56	41	4	2	52	1.33
40815571--40815610	21	2.0	21	85	5	55	75	7	5	12	1.18
40818587--40818689	46	2.2	48	78	5	111	30	28	14	27	1.95
40819683--40819811	25	5.4	24	83	11	128	38	20	22	18	1.93
40819725--40819811	25	3.5	25	95	0	156	39	20	20	19	1.93
40832515--40832547	11	3.0	11	91	8	50	27	24	12	36	1.91
40834220--40834340	46	2.6	46	87	5	172	20	22	12	44	1.85
40834275--40834525	45	5.6	45	73	6	152	21	18	14	44	1.86
40834454--40834571	46	2.6	45	89	4	166	18	16	17	46	1.84
40834541--40834609	34	2.0	34	100	0	138	20	20	11	47	1.80
40839672--40839737	30	2.2	30	94	2	114	46	4	21	27	1.70
40840224--40840316	25	3.7	25	77	5	98	33	20	18	27	1.96
40841403--40841441	20	2.0	20	90	10	62	12	5	30	51	1.62
40843478--40843543	27	2.6	25	76	9	69	22	25	15	36	1.93
40843527--40843615	24	3.7	24	76	5	90	13	26	24	34	1.93
40851220--40851292	25	3.0	25	93	2	121	20	21	13	43	1.86
40851367--40851458	27	3.7	26	76	11	84	21	26	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40854795--40854837	20	2.1	21	91	4	70	18	0	9	72	1.11
40855913--40855938	12	2.2	12	100	0	52	7	15	15	61	1.55
40857518--40857708	43	4.4	44	78	7	205	29	15	24	30	1.95
40861111--40861223	37	3.1	37	96	0	199	27	30	19	22	1.98
40861370--40861580	98	2.2	98	96	0	386	30	26	6	36	1.82
40861370--40861580	50	4.3	49	86	7	295	30	26	6	36	1.82
40862239--40862279	20	2.0	20	85	4	55	43	9	2	43	1.50
40863924--40863948	11	2.3	11	100	0	50	0	12	0	88	0.53
40882273--40882378	27	3.9	27	84	13	128	35	22	23	17	1.95
40882266--40882378	55	2.1	54	85	8	149	36	23	23	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325