genome.fa.s5.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  171  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53858185--53858209	12	2.1	12	100	0	50	12	0	8	80	0.92
53859826--53859922	30	3.2	30	72	8	99	28	16	26	27	1.97
53862007--53862039	6	5.5	6	100	0	66	18	51	0	30	1.46
53864843--53864905	6	10.5	6	92	0	99	33	3	49	14	1.59
53866462--53866506	14	3.3	14	78	6	56	35	0	15	48	1.45
53869244--53869285	13	3.1	13	86	10	57	71	4	21	2	1.16
53879635--53879677	14	3.0	14	84	15	61	2	20	4	72	1.14
53888790--53888884	10	8.9	11	80	12	74	16	4	4	74	1.13
53888792--53888822	13	2.4	13	94	0	53	12	3	3	80	0.95
53888826--53888861	9	3.9	9	92	3	54	11	8	2	77	1.08
53888806--53888853	21	2.4	19	86	6	60	16	6	4	72	1.20
53892745--53892778	10	3.4	10	83	0	50	38	17	26	17	1.92
53892743--53892787	20	2.3	20	84	3	65	37	13	26	22	1.91
53895907--53896320	47	8.8	46	77	9	320	26	18	29	25	1.98
53895907--53896321	94	4.4	93	81	9	459	26	18	29	25	1.98
53895952--53896313	141	2.6	141	80	7	396	27	17	30	25	1.97
53897085--53897217	54	2.4	55	83	3	178	21	22	33	22	1.97
53898284--53898355	18	3.9	19	80	14	80	8	20	1	69	1.22
53898322--53898369	12	4.2	11	78	5	51	4	20	0	75	0.97
53898997--53899084	36	2.4	36	96	0	158	18	29	12	39	1.87
53900517--53900564	19	2.8	17	81	9	53	47	4	12	35	1.60
53900591--53900740	49	3.0	50	94	1	250	55	10	5	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53902357--53902411	20	2.8	20	85	0	83	27	29	14	29	1.95
53905224--53905262	15	2.4	15	87	12	51	66	2	20	10	1.33
53906745--53906799	20	2.8	20	88	0	83	25	29	16	29	1.97
53910063--53910176	43	2.7	43	83	8	135	29	17	24	28	1.97
53911012--53911059	15	3.3	15	73	5	53	29	0	27	43	1.55
53911006--53911049	14	3.1	14	74	6	52	27	0	34	38	1.57
53911006--53911065	29	2.1	29	93	0	102	28	0	30	41	1.56
53914446--53914479	12	2.8	12	90	0	50	23	23	5	47	1.73
53915657--53915704	15	3.3	15	73	5	53	31	0	25	43	1.55
53915651--53915710	29	2.1	29	90	0	93	30	0	28	41	1.56
53927572--53927612	21	1.9	21	85	5	55	14	12	9	63	1.52
53929367--53929560	49	3.9	49	80	6	212	27	28	19	24	1.98
53929378--53929560	50	3.7	49	80	7	190	27	28	18	24	1.98
53929378--53929564	101	1.9	99	86	4	268	27	29	18	24	1.98
53935573--53935616	14	3.2	14	78	18	56	6	11	11	70	1.33
53936356--53936390	6	5.8	6	96	0	61	51	11	0	37	1.38
53947404--53947437	17	2.0	17	88	11	52	47	14	11	26	1.79
53947887--53947911	13	1.9	13	100	0	50	64	8	0	28	1.22
53948136--53948184	10	4.8	10	80	14	55	40	22	22	14	1.90
53948136--53948184	21	2.4	21	89	3	73	40	22	22	14	1.90
53954936--53954989	6	8.8	6	80	11	65	50	14	16	18	1.79
53955494--53955676	27	6.8	27	86	5	219	43	9	18	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53955693--53955752	26	2.3	27	82	8	70	26	10	23	40	1.86
53957676--53957726	6	8.3	6	77	12	50	45	13	21	19	1.85
53957676--53957734	31	1.9	31	92	0	100	45	13	22	18	1.84
53957678--53957748	31	2.3	31	85	4	90	46	12	18	22	1.82
53957969--53958020	27	2.0	26	84	3	68	34	21	26	17	1.95
53958257--53958447	27	7.1	27	84	2	240	41	8	21	28	1.82
53958257--53958447	81	2.4	81	85	1	267	41	8	21	28	1.82
53958257--53958447	54	3.5	54	87	0	274	41	8	21	28	1.82
53958428--53958494	27	2.5	27	85	9	84	31	4	22	41	1.73
53958456--53958515	26	2.3	27	82	8	70	28	5	21	45	1.73
53963371--53963488	32	3.7	32	86	2	157	26	16	26	31	1.96
53965869--53965942	36	2.1	36	97	0	139	25	18	21	33	1.96
53966901--53966942	18	2.3	19	80	8	52	59	16	4	19	1.54
53967694--53967727	17	1.9	17	88	5	50	14	44	29	11	1.81
53974073--53974231	67	2.4	68	81	9	182	30	16	30	22	1.96
53983948--53984045	27	3.6	27	83	0	124	35	17	10	36	1.84
53984043--53984109	27	2.5	27	74	11	66	43	16	16	23	1.87
53984078--53984159	27	3.0	27	80	0	101	39	14	19	26	1.90
53987560--53987610	18	2.8	18	74	11	59	21	19	19	39	1.93
53998396--53998434	20	1.9	20	84	5	51	41	0	5	53	1.23
53999879--53999938	30	2.0	30	83	6	77	30	23	6	40	1.80
54001229--54001357	46	2.8	46	94	2	215	19	20	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54008738--54008909	46	3.8	45	78	14	201	20	20	29	29	1.98
54008733--54008902	90	1.9	92	92	4	292	21	20	28	28	1.98
54020738--54020801	31	2.1	31	87	0	92	25	21	15	37	1.93
54021976--54022153	46	3.9	46	93	0	284	24	32	8	34	1.86
54022157--54022511	47	7.5	45	92	3	467	27	28	12	32	1.92
54022157--54022511	94	3.8	94	91	0	550	27	28	12	32	1.92
54022171--54022511	141	2.4	141	90	0	556	26	28	12	32	1.93
54025415--54025518	23	4.4	24	88	3	149	30	22	19	27	1.98
54025568--54025608	20	2.0	20	95	0	73	36	21	9	31	1.86
54027873--54028041	42	4.1	42	88	3	234	24	17	23	34	1.96
54027873--54028067	82	2.4	81	87	3	275	23	18	24	33	1.97
54027873--54028065	42	4.7	39	83	8	190	23	19	23	33	1.97
54032639--54032756	49	2.4	49	81	5	132	30	20	25	23	1.98
54040947--54041102	81	1.9	81	88	0	231	31	21	7	39	1.80
54040947--54041102	27	5.8	27	89	0	195	31	21	7	39	1.80
54040934--54041132	81	2.5	81	80	0	227	34	21	7	37	1.80
54041082--54041384	81	3.7	80	78	6	272	42	20	7	30	1.79
54041082--54041414	27	12.3	27	79	6	235	40	20	8	30	1.81
54041432--54041505	27	2.7	27	74	12	71	37	20	20	21	1.94
54042317--54042452	52	2.7	51	89	5	197	30	22	20	27	1.98
54042317--54042452	26	5.3	26	84	3	163	30	22	20	27	1.98
54042700--54042809	31	3.5	31	89	0	175	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54052620--54052682	24	2.6	25	87	5	85	33	30	15	20	1.94
54067801--54068009	55	3.9	53	79	7	208	22	24	16	35	1.95
54067801--54068001	108	1.8	110	87	4	300	22	24	16	35	1.95
54074844--54075331	27	18.1	27	85	3	563	28	22	8	40	1.83
54075348--54075530	27	7.0	26	84	4	208	34	18	20	25	1.96
54075348--54075504	78	2.0	79	88	3	237	35	19	19	24	1.95
54075730--54075812	27	3.1	26	87	5	112	19	21	21	37	1.94
54075900--54075958	22	2.7	22	81	0	64	20	25	22	32	1.98
54076314--54076421	6	17.8	6	81	12	132	17	17	14	50	1.79
54078431--54078916	27	18.0	27	83	3	530	28	21	8	41	1.81
54078883--54078941	26	2.2	27	82	8	68	37	22	3	37	1.71
54078933--54079119	27	7.0	27	82	3	225	33	18	21	26	1.97
54078896--54079060	80	2.1	80	83	2	206	35	18	16	29	1.93
54078933--54079119	54	3.5	54	86	3	270	33	18	21	26	1.97
54079318--54079400	27	3.1	26	84	5	103	19	20	21	38	1.93
54079711--54079777	27	2.5	27	85	4	82	19	25	19	35	1.95
54079927--54080064	6	22.8	6	76	15	133	19	15	13	50	1.77
54079930--54080064	30	4.7	30	80	14	167	19	16	14	50	1.78
54079930--54080035	55	1.9	55	92	3	178	19	16	14	49	1.80
54079902--54080064	61	2.7	61	86	2	213	19	16	14	49	1.80
54081687--54081885	39	5.1	39	87	2	283	23	21	28	26	1.99
54086102--54086132	16	1.9	16	93	0	53	35	22	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54086099--54086138	20	2.0	20	90	0	62	37	20	0	42	1.52
54086347--54086579	55	4.4	53	75	11	201	21	23	17	37	1.94
54088930--54088973	22	2.0	23	90	4	72	22	2	52	22	1.58
54092764--54092808	21	2.1	21	100	0	90	31	4	40	24	1.75
54101121--54101220	27	3.7	27	78	15	91	16	23	22	39	1.92
54101138--54101232	27	3.5	26	81	13	120	14	22	21	42	1.89
54104580--54104664	43	2.0	43	81	9	102	25	28	18	27	1.98
54112648--54112825	27	6.6	27	83	3	205	26	15	28	29	1.96
54112649--54112804	82	1.9	81	88	3	233	26	15	28	29	1.96
54112645--54112825	82	2.2	81	83	2	229	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325