genome.fa.s5.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  138  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43150010--43150091	25	3.3	25	86	6	114	26	21	24	26	2.00
43150223--43150315	42	2.2	42	88	0	132	30	16	19	34	1.93
43150339--43150417	31	2.5	31	93	0	131	29	18	26	25	1.98
43152638--43152746	27	4.0	27	76	9	87	40	19	8	32	1.81
43152750--43152952	27	7.5	27	82	3	203	31	21	6	40	1.78
43152752--43152952	81	2.5	80	82	5	235	31	21	6	40	1.78
43152850--43152964	54	2.1	54	85	0	149	34	21	3	40	1.71
43152820--43152979	81	2.0	81	83	0	203	33	20	5	40	1.76
43152945--43153183	27	8.8	27	75	7	171	38	17	10	33	1.84
43153201--43153274	27	2.7	27	76	12	71	37	21	17	22	1.94
43154024--43154093	33	2.1	33	100	0	140	17	11	28	42	1.83
43154114--43154249	52	2.7	51	89	5	206	28	20	22	27	1.99
43154114--43154249	26	5.3	26	86	3	172	28	20	22	27	1.99
43154382--43154474	42	2.2	43	83	7	120	29	16	19	35	1.93
43154496--43154574	31	2.5	31	91	0	122	31	18	24	25	1.98
43169781--43170172	134	2.9	133	79	4	459	32	15	12	39	1.85
43170126--43170244	36	3.3	34	74	13	105	30	8	15	45	1.76
43175178--43175633	47	9.6	47	92	2	741	33	8	29	28	1.86
43175178--43175633	96	4.8	94	93	1	741	33	8	29	28	1.86
43175178--43175633	143	3.2	143	94	1	781	33	8	29	28	1.86
43184815--43184856	21	2.0	21	100	0	84	57	4	4	33	1.41
43188990--43189213	40	5.6	40	83	5	281	24	23	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43188994--43189213	83	2.7	80	85	4	282	23	23	27	25	2.00
43197841--43198055	108	2.0	108	100	0	430	27	16	23	31	1.96
43211818--43212459	321	2.0	321	91	1	1054	29	16	24	29	1.97
43219223--43219264	21	1.9	23	85	9	61	50	19	16	14	1.79
43221106--43221358	39	6.4	40	85	5	293	24	20	28	26	1.99
43221106--43221358	79	3.2	79	82	6	291	24	20	28	26	1.99
43221176--43221390	118	1.8	117	82	5	272	24	20	28	26	1.99
43221137--43221390	79	3.2	79	82	5	212	25	20	27	25	1.99
43229047--43229309	40	6.6	40	87	3	316	24	20	28	26	1.99
43229086--43229344	80	3.3	80	84	3	238	25	20	28	25	1.99
43240611--43240702	18	5.1	18	80	6	82	34	1	1	63	1.09
43240618--43240712	17	5.4	17	75	16	70	33	2	1	63	1.13
43240629--43240712	9	9.4	9	74	16	68	32	2	1	64	1.14
43240645--43240726	43	1.9	43	82	5	103	36	2	0	60	1.10
43243323--43243387	34	1.9	34	93	0	112	49	18	10	21	1.78
43243323--43243387	31	2.0	32	88	8	96	49	18	10	21	1.78
43246838--43246902	25	2.6	25	84	13	82	61	1	7	29	1.33
43246844--43246904	26	2.3	26	88	8	88	59	1	6	32	1.33
43247524--43247555	3	10.7	3	100	0	64	68	0	0	31	0.90
43250360--43250554	103	1.9	104	90	1	311	33	16	17	31	1.93
43250886--43250915	16	1.9	15	93	6	51	70	0	3	26	1.03
43251049--43251089	22	1.9	22	85	14	59	63	9	4	21	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43251167--43251229	26	2.5	25	80	10	74	50	0	11	38	1.38
43258714--43258839	66	2.0	66	84	4	168	32	11	11	43	1.78
43258762--43258794	17	1.9	17	93	0	57	15	12	15	57	1.65
43265692--43265752	24	2.4	25	86	10	81	21	1	8	68	1.24
43265981--43266013	13	2.4	14	90	10	50	42	3	0	54	1.15
43270410--43270501	28	3.2	28	74	9	96	60	1	9	28	1.35
43286476--43286521	23	2.0	23	84	12	60	45	10	6	36	1.65
43286483--43286527	23	2.0	23	82	8	56	40	13	8	37	1.76
43289534--43289677	45	3.2	44	75	6	137	43	11	18	26	1.84
43294179--43294842	344	1.9	344	86	2	949	28	26	11	34	1.91
43302957--43302983	5	5.4	5	100	0	54	44	18	18	18	1.87
43305994--43306051	29	2.0	29	89	0	89	27	3	36	32	1.74
43306335--43306420	17	5.0	17	79	13	95	68	1	25	4	1.16
43306335--43306412	8	9.1	8	72	19	52	67	1	25	5	1.18
43309084--43309220	43	3.2	43	74	10	129	27	25	19	27	1.99
43316220--43316382	85	1.9	85	83	5	213	26	25	20	26	1.99
43318338--43318371	14	2.3	15	90	5	52	41	0	2	55	1.15
43337221--43337354	55	2.4	55	80	4	146	27	29	23	19	1.98
43337660--43337698	18	2.1	18	85	4	51	2	56	0	41	1.13
43339372--43339402	16	1.9	16	93	0	53	22	3	0	74	0.96
43342365--43342430	32	2.1	32	94	0	114	39	22	4	33	1.75
43344211--43344243	16	1.9	18	88	11	52	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43344537--43344627	19	4.9	19	86	8	143	36	15	12	36	1.85
43344745--43344784	21	2.0	20	85	5	53	7	2	20	70	1.24
43344977--43345295	45	7.1	45	81	4	347	25	28	14	31	1.95
43344977--43345295	89	3.5	90	82	3	356	25	28	14	31	1.95
43345235--43345501	78	3.4	78	91	2	446	24	23	19	32	1.97
43348468--43348577	16	7.0	16	75	17	90	40	10	14	34	1.81
43361809--43361856	25	1.9	25	91	0	78	35	25	14	25	1.94
43361901--43361956	11	5.5	11	71	16	57	35	12	19	32	1.89
43361890--43361956	20	3.3	20	93	0	116	34	11	20	32	1.90
43369344--43369379	8	4.5	8	85	0	54	47	22	19	11	1.80
43369892--43369948	11	5.5	11	70	16	50	35	12	19	33	1.89
43369882--43369948	20	3.3	20	87	0	98	34	11	20	32	1.90
43369998--43370113	23	5.0	24	85	7	143	25	20	24	29	1.99
43370307--43370367	31	2.0	31	90	0	95	32	14	26	26	1.95
43372853--43372917	26	2.5	26	87	5	87	33	18	18	29	1.95
43372873--43372925	26	2.0	26	88	0	79	30	15	18	35	1.92
43374855--43374909	19	3.0	17	81	10	56	41	0	14	43	1.45
43378631--43378675	20	2.2	20	100	0	90	28	26	11	33	1.91
43381435--43381610	46	3.8	46	79	12	216	21	21	28	29	1.98
43381432--43381602	93	1.8	93	94	0	306	21	21	28	28	1.98
43387909--43387985	20	4.1	19	73	23	65	32	6	1	59	1.31
43387926--43387956	16	1.9	16	93	0	53	38	6	0	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43395134--43395254	42	2.9	42	78	0	143	35	23	14	25	1.94
43408897--43408933	5	7.2	5	93	6	65	81	0	18	0	0.70
43409865--43409925	27	2.3	27	81	10	74	54	6	0	39	1.27
43409973--43410016	19	2.4	18	85	7	54	40	9	0	50	1.34
43412750--43412928	85	2.1	85	98	0	349	37	8	27	26	1.85
43414131--43414921	47	16.7	47	90	2	1228	32	10	29	26	1.90
43414793--43414914	22	5.3	22	62	21	61	33	11	29	25	1.91
43432292--43432400	42	2.6	42	82	0	137	34	27	14	22	1.94
43433848--43433891	20	2.1	21	83	8	54	54	4	18	22	1.61
43434699--43434757	30	2.0	30	86	0	82	38	8	25	27	1.84
43444892--43444949	26	2.2	26	81	3	71	29	17	17	36	1.92
43447259--43447302	19	2.4	18	85	7	54	40	9	0	50	1.34
43448927--43448959	8	4.1	8	92	0	57	48	24	24	3	1.65
43449517--43449558	22	1.9	22	90	0	66	26	4	50	19	1.67
43449592--43449637	20	2.3	21	82	14	62	26	17	28	28	1.98
43457411--43457458	24	2.0	25	83	4	62	22	20	18	37	1.94
43459438--43459587	41	3.7	41	83	1	212	27	28	23	21	1.99
43463390--43463459	21	3.2	21	66	18	61	20	14	27	38	1.91
43463386--43463471	45	1.9	45	97	0	163	24	13	25	36	1.93
43466350--43466461	27	4.1	27	82	7	129	37	22	23	16	1.94
43466350--43466461	54	2.1	54	84	3	145	37	22	23	16	1.94
43470982--43471034	27	2.0	27	96	0	97	26	28	3	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43485056--43485084	15	1.9	15	100	0	58	6	13	13	65	1.45
43486694--43486740	24	2.0	24	83	8	60	2	19	17	61	1.44
43488607--43488668	14	4.5	13	79	16	63	75	0	6	17	1.00
43488583--43488661	27	2.8	28	83	11	97	74	0	5	20	1.00
43488615--43488654	9	4.6	8	88	11	53	82	0	0	17	0.67
43494038--43494070	13	2.6	13	90	4	50	48	12	0	39	1.40
43505052--43505181	50	2.6	49	86	1	170	29	28	16	25	1.97
43506588--43506780	47	4.0	48	81	8	196	23	17	28	30	1.97
43511098--43511155	30	2.0	29	82	3	71	60	13	15	10	1.59
43511127--43511160	15	2.2	16	94	5	61	61	17	8	11	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325