genome.fa.s5.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  163  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51580580--51580752	46	3.7	46	72	14	156	22	20	27	28	1.99
51586142--51586313	46	3.7	46	74	11	172	22	19	27	30	1.98
51586134--51586305	93	1.8	93	91	2	283	22	20	28	29	1.98
51588199--51588250	25	2.0	26	82	10	63	42	1	5	50	1.37
51588217--51588265	20	2.6	19	81	12	66	44	2	4	48	1.33
51598841--51598888	20	2.3	21	92	3	80	35	10	18	35	1.85
51598936--51599001	24	2.7	25	83	11	91	28	24	21	25	1.99
51599251--51599315	31	2.1	32	85	5	89	29	13	24	32	1.94
51609032--51609088	20	2.8	20	86	0	78	45	0	28	26	1.54
51621567--51621628	22	2.7	23	71	16	58	38	11	22	27	1.88
51625707--51625884	40	4.5	40	88	4	218	23	29	25	21	1.99
51638120--51638491	27	13.8	26	74	10	191	38	22	10	29	1.87
51638120--51638387	54	4.9	55	77	6	253	38	22	10	29	1.87
51638120--51638399	81	3.5	80	79	4	285	38	22	10	29	1.86
51638113--51638326	108	2.0	108	88	3	324	37	22	9	29	1.86
51638426--51638561	27	5.0	27	88	0	191	37	19	18	24	1.94
51638764--51638830	25	2.7	25	90	0	98	28	25	20	25	1.99
51642883--51642955	34	2.1	35	82	2	85	46	15	5	32	1.68
51647044--51647117	26	3.0	26	60	25	61	27	18	22	31	1.98
51647044--51647145	47	2.2	47	92	0	168	26	18	25	29	1.98
51648464--51648507	21	2.3	18	84	11	52	70	0	6	22	1.11
51648457--51648512	29	2.0	28	82	10	69	67	0	5	26	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51648456--51648518	29	2.2	29	77	11	67	65	0	6	28	1.17
51648590--51648737	79	1.9	76	81	12	176	60	2	6	31	1.34
51651547--51651723	92	1.9	95	88	3	270	25	12	23	37	1.91
51658136--51658185	23	2.1	24	81	3	57	34	0	28	38	1.57
51660173--51660372	27	7.3	27	85	3	204	26	14	29	30	1.95
51660173--51660372	55	3.7	54	81	6	224	26	14	29	30	1.95
51668280--51668483	27	7.6	27	84	3	223	26	15	28	29	1.96
51668281--51668483	54	3.8	54	83	4	248	26	15	29	29	1.96
51670604--51670689	27	3.2	27	66	21	81	37	4	23	34	1.76
51670583--51670691	53	2.1	53	100	0	218	38	5	20	35	1.76
51672984--51673033	26	2.0	24	81	14	57	16	4	8	72	1.24
51675343--51675435	46	2.0	46	91	0	150	23	5	11	59	1.53
51677575--51677646	19	3.7	19	82	14	76	55	2	0	41	1.14
51677580--51677644	20	3.4	19	85	6	87	53	3	0	43	1.16
51677584--51677644	18	3.2	19	84	9	63	55	3	0	40	1.16
51679128--51679167	20	2.0	20	85	9	55	47	0	2	50	1.14
51682246--51682355	42	2.6	42	79	2	105	17	25	14	42	1.87
51682295--51682355	21	2.9	21	83	11	81	16	22	14	45	1.84
51685967--51686004	8	4.8	8	96	0	67	55	10	0	34	1.34
51685959--51686004	24	1.9	24	86	0	65	58	8	0	32	1.28
51686184--51686221	20	1.9	20	88	0	58	36	2	18	42	1.64
51686837--51686901	20	3.2	20	70	25	57	56	12	12	18	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51687014--51687056	20	2.2	20	91	0	68	58	6	16	18	1.60
51687135--51687191	20	2.9	19	77	12	62	54	8	22	14	1.67
51687111--51687323	106	2.0	106	97	0	399	47	9	16	25	1.77
51687528--51687583	20	2.7	22	78	15	66	58	1	16	23	1.47
51690056--51690144	43	2.1	43	80	0	97	30	26	16	25	1.97
51697147--51697231	43	2.0	43	88	0	125	28	31	18	21	1.97
51697527--51697561	15	2.2	16	90	5	54	28	14	8	48	1.73
51701695--51701982	47	6.1	47	89	0	432	32	11	29	26	1.92
51701722--51701797	23	3.2	25	62	24	63	28	13	34	23	1.92
51701695--51701982	141	2.0	141	94	0	504	32	11	29	26	1.92
51701695--51702024	94	3.5	93	84	3	385	33	11	28	27	1.91
51702187--51702368	37	4.9	37	93	0	301	23	18	32	25	1.97
51708469--51708614	20	7.3	20	68	13	77	56	8	16	18	1.66
51708470--51708615	40	3.7	41	68	13	90	56	8	16	18	1.66
51708416--51708615	60	3.4	57	75	10	188	55	9	16	20	1.67
51709097--51709130	17	2.0	17	100	0	68	41	17	23	17	1.90
51709130--51709173	20	2.2	20	91	0	70	59	6	6	27	1.49
51709479--51709653	20	8.9	19	70	14	79	57	9	13	20	1.63
51709578--51709653	21	3.9	19	78	15	75	57	9	10	22	1.60
51709966--51710018	18	2.8	18	82	8	52	66	1	5	26	1.25
51710042--51710095	19	2.8	20	80	2	65	53	1	3	40	1.29
51711488--51711514	6	4.5	6	100	0	54	51	14	0	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51711923--51712087	71	2.3	72	81	2	188	36	18	21	23	1.95
51712483--51712685	107	1.9	107	93	0	352	45	16	5	32	1.72
51712624--51712726	18	5.4	18	68	23	59	44	14	2	37	1.60
51716364--51716464	36	2.8	36	73	5	105	33	21	24	19	1.97
51716364--51716528	72	2.3	72	81	2	179	35	20	21	21	1.96
51716912--51717130	107	2.1	105	91	1	348	44	16	6	32	1.73
51717159--51717220	22	2.8	22	79	16	65	38	14	11	35	1.82
51731415--51731446	15	2.1	15	100	0	64	37	6	12	43	1.68
51732851--51732915	34	1.9	34	96	0	121	41	1	20	36	1.61
51733340--51733395	28	2.0	29	89	3	87	44	0	1	53	1.11
51735612--51735787	40	4.4	40	82	5	214	26	26	22	24	2.00
51738321--51738385	25	2.6	24	83	9	69	27	6	7	58	1.50
51738549--51738609	26	2.3	26	83	5	70	32	3	3	60	1.29
51738567--51738630	26	2.5	26	85	10	69	25	6	6	62	1.42
51742097--51742371	135	2.0	135	90	2	428	33	26	14	25	1.95
51746150--51746260	24	4.6	24	82	0	114	29	36	18	15	1.92
51746148--51746261	48	2.4	48	79	5	140	28	35	20	15	1.93
51756546--51756575	15	1.9	16	93	6	53	53	0	3	43	1.17
51760393--51760613	40	5.6	40	82	2	241	25	23	25	24	2.00
51768455--51768675	40	5.6	40	83	2	250	25	23	26	24	2.00
51775069--51775128	30	2.0	30	86	0	84	38	6	25	30	1.81
51777537--51777576	21	1.9	21	90	10	64	47	20	0	32	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51782923--51782975	26	2.0	26	85	3	70	26	20	24	28	1.99
51785582--51785615	6	5.7	6	100	0	68	0	47	0	52	1.00
51787084--51787288	27	7.6	27	86	3	259	30	27	15	26	1.96
51787082--51787287	109	1.9	108	88	3	308	30	28	15	26	1.96
51795156--51795360	27	7.6	27	85	3	250	30	27	15	27	1.96
51803176--51803380	27	7.6	27	86	3	259	30	27	15	26	1.96
51817784--51817852	28	2.5	27	79	4	75	33	24	21	20	1.97
51818210--51818323	27	4.2	27	84	2	113	27	15	19	37	1.92
51822075--51822117	17	2.5	17	79	20	54	23	27	9	39	1.85
51822514--51822610	30	3.2	30	70	8	81	26	15	28	28	1.96
51824766--51824799	12	2.8	12	95	0	59	14	26	0	58	1.36
51824718--51824816	42	2.4	42	81	10	114	13	22	1	63	1.35
51824792--51824816	12	2.1	12	100	0	50	8	16	0	76	1.02
51824819--51824849	12	2.6	12	94	0	53	29	16	9	45	1.79
51830660--51830837	52	3.5	50	88	4	250	29	13	29	27	1.94
51830660--51830837	51	3.5	51	89	4	254	29	13	29	27	1.94
51832637--51832696	21	2.5	25	79	15	65	16	20	21	41	1.90
51832722--51832789	22	3.1	22	79	8	75	10	35	22	32	1.88
51838300--51838425	63	2.0	63	98	0	243	36	11	7	43	1.71
51842404--51842438	17	2.1	17	88	0	52	17	25	37	20	1.94
51842653--51842836	27	6.9	27	79	3	174	42	18	5	33	1.73
51842655--51842811	54	2.9	53	85	8	201	43	19	3	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51842844--51842953	26	4.1	27	87	3	143	32	16	25	25	1.96
51842844--51842953	53	2.1	53	86	3	150	32	16	25	25	1.96
51843756--51843816	32	1.9	33	86	6	90	13	18	26	42	1.86
51847051--51847289	54	4.4	54	81	2	239	40	16	9	33	1.81
51847056--51847289	81	2.9	79	80	5	245	40	17	8	33	1.80
51847044--51847289	27	9.1	27	76	2	199	39	17	9	33	1.82
51847276--51847429	54	3.0	53	74	13	158	33	14	24	28	1.94
51847346--51847388	21	2.0	21	86	0	59	37	2	30	30	1.70
51847276--51847429	27	5.9	27	77	11	133	33	14	24	28	1.94
51848861--51848893	18	1.9	17	88	11	50	42	12	15	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325