Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  122  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38041663--38041720
30
1.9
30
89
6
91
15
20
39
24
1.91
38044227--38044280
26
2.1
26
96
0
99
35
18
18
27
1.94
38047740--38047795
25
2.3
23
77
17
58
32
14
12
41
1.83
38052061--38052086
13
2.0
13
100
0
52
7
38
30
23
1.83
38056529--38056594
19
3.2
21
87
6
64
36
19
9
34
1.84
38056546--38056643
19
5.2
19
92
7
164
35
16
10
37
1.82
38056546--38056643
36
2.6
37
90
9
153
35
16
10
37
1.82
38056842--38056914
28
2.6
29
82
4
94
28
13
34
23
1.93
38065794--38065838
16
2.8
16
93
0
81
51
22
20
6
1.70
38066032--38066134
28
3.7
28
85
0
143
24
16
33
26
1.96
38066032--38066151
56
2.1
57
85
1
161
28
15
31
24
1.96
38068858--38068892
16
2.2
16
100
0
70
45
31
0
22
1.53
38070195--38070614
224
1.9
224
92
2
718
37
16
13
31
1.88
38082137--38082181
10
4.5
10
82
0
54
46
2
6
44
1.42
38094924--38094977
24
2.2
25
74
9
58
31
16
3
48
1.64
38095058--38095152
34
2.8
34
86
0
118
44
31
6
17
1.74
38098291--38098326
11
3.1
11
85
14
54
38
2
0
58
1.13
38098291--38098329
13
3.2
12
86
13
53
41
2
0
56
1.13
38101459--38101674
48
4.5
49
86
5
273
30
19
25
23
1.98
38101459--38101822
48
7.6
47
77
9
260
28
19
26
25
1.99
38101459--38101822
98
3.8
98
77
11
335
28
19
26
25
1.99
38101459--38101870
48
8.6
48
76
9
217
28
19
26
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38104519--38104560
22
1.9
22
90
0
66
33
26
11
28
1.92
38105343--38105434
39
2.3
40
81
7
107
36
18
17
27
1.93
38105480--38105667
40
4.7
39
75
12
170
28
22
19
30
1.98
38105956--38106020
14
4.9
14
73
15
50
16
0
46
36
1.48
38105967--38106087
7
17.0
7
69
9
66
19
0
37
42
1.58
38106245--38106278
15
2.3
15
90
5
52
20
0
32
47
1.51
38107071--38107167
8
11.9
8
79
14
92
62
3
1
32
1.17
38107097--38107160
7
8.4
7
80
13
65
67
1
1
29
1.09
38107097--38107160
15
4.2
15
84
7
76
67
1
1
29
1.09
38107097--38107167
23
3.1
23
80
9
74
64
1
1
32
1.11
38112012--38112053
14
3.1
14
86
10
52
21
4
4
69
1.26
38112433--38112643
43
4.9
43
76
5
113
27
12
27
32
1.92
38112433--38112643
86
2.4
86
79
3
228
27
12
27
32
1.92
38114322--38114354
12
2.8
12
100
0
66
66
0
9
24
1.20
38115264--38115323
10
6.0
10
83
11
70
68
1
6
23
1.22
38115264--38115321
30
1.9
30
86
13
84
68
1
6
22
1.22
38125840--38125887
20
2.4
19
86
13
62
45
0
20
33
1.52
38126317--38126364
5
9.6
5
86
8
62
43
0
14
41
1.45
38126721--38126772
22
2.3
23
75
15
56
36
1
21
40
1.64
38132877--38132925
5
9.8
5
76
24
50
79
0
2
18
0.83
38132877--38132925
20
2.5
19
83
9
62
79
0
2
18
0.83
38136928--38137112
40
4.7
40
83
7
218
23
21
28
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38136928--38137110
79
2.3
81
84
7
232
24
21
27
26
1.99
38136929--38137145
79
2.7
78
78
12
228
25
21
27
25
1.99
38142516--38142556
16
2.6
15
88
11
64
19
0
4
75
0.98
38144078--38144116
17
2.3
17
100
0
78
5
0
30
64
1.15
38144105--38144135
13
2.4
13
94
0
53
9
0
16
74
1.07
38149802--38149898
19
5.3
18
78
11
65
35
11
15
38
1.83
38149812--38149909
19
5.2
19
88
7
146
35
10
17
36
1.84
38149812--38149909
36
2.6
37
87
9
135
35
10
17
36
1.84
38157984--38158512
78
6.8
78
87
3
717
33
19
21
25
1.97
38158452--38158719
45
5.9
45
75
6
247
31
15
26
26
1.96
38158543--38158705
89
1.8
89
89
0
254
28
14
30
26
1.95
38158452--38158719
134
2.0
136
80
5
301
31
15
26
26
1.96
38159081--38159140
17
3.2
19
86
13
88
38
10
16
35
1.82
38161669--38161698
8
3.6
8
91
8
51
0
13
0
86
0.57
38171668--38171711
13
3.4
13
93
0
70
11
0
13
75
1.06
38171668--38171713
7
7.0
7
78
11
53
13
0
15
71
1.14
38171864--38171916
26
2.0
26
100
0
106
47
15
15
22
1.82
38177616--38177751
44
3.0
44
82
6
148
63
6
2
26
1.33
38177654--38177703
24
2.1
24
85
7
66
66
6
2
26
1.26
38177847--38177923
27
2.8
28
81
15
97
62
1
5
31
1.25
38179534--38180008
44
10.7
43
74
12
254
27
21
18
31
1.97
38179577--38179643
33
2.0
33
94
0
116
29
26
17
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38179455--38179777
167
1.9
168
89
0
495
29
20
19
31
1.97
38179836--38180009
45
3.9
45
86
3
217
26
22
18
31
1.98
38180406--38180505
46
2.2
46
85
3
130
25
25
14
36
1.93
38180423--38180534
46
2.4
46
83
0
134
26
22
19
31
1.98
38180949--38181105
53
3.0
53
93
0
251
53
6
15
24
1.65
38184587--38184632
13
3.5
13
87
0
65
36
45
0
17
1.49
38191060--38191157
17
5.4
17
65
13
61
30
4
15
50
1.63
38191055--38191163
37
2.9
37
97
0
209
31
4
16
47
1.67
38191077--38191140
20
3.3
20
65
12
62
31
6
17
45
1.73
38191163--38191222
9
6.7
9
90
0
93
28
10
15
46
1.77
38193924--38193974
26
2.0
26
100
0
102
35
29
7
27
1.85
38200965--38201020
26
2.2
26
100
0
112
35
26
7
30
1.83
38201605--38201649
19
2.3
20
88
7
67
42
13
22
22
1.88
38203590--38203679
24
3.9
23
73
17
87
63
7
1
27
1.29
38203591--38203679
46
2.0
44
88
4
133
64
7
1
26
1.28
38203685--38203741
28
2.0
28
86
0
78
61
3
7
28
1.39
38203647--38203749
24
4.2
24
67
20
61
62
3
3
30
1.31
38203738--38203793
29
1.9
29
82
7
69
66
7
1
25
1.27
38208582--38208709
48
2.7
47
83
8
145
24
28
19
27
1.98
38217702--38217860
22
7.0
22
73
9
131
20
23
18
37
1.94
38217689--38217860
47
3.7
47
91
2
278
20
23
18
37
1.94
38220397--38220423
13
2.1
13
100
0
54
74
0
25
0
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38225419--38225451
3
10.7
3
93
6
57
33
3
0
63
1.10
38239435--38239499
25
2.6
26
80
7
80
24
23
20
32
1.98
38243634--38243678
17
2.6
17
89
0
72
40
20
15
24
1.91
38244956--38244998
21
2.0
21
82
8
52
58
6
9
25
1.54
38245057--38245119
26
2.4
26
84
5
74
57
3
6
33
1.40
38253171--38253385
102
2.1
102
96
0
394
52
6
7
33
1.55
38257774--38257866
18
5.3
18
72
8
75
36
15
13
34
1.87
38257803--38257903
18
5.7
18
72
10
73
33
13
13
38
1.85
38258045--38258162
51
2.3
51
82
5
130
43
20
18
17
1.89
38272203--38272257
27
2.0
27
100
0
110
60
3
3
32
1.32
38272194--38272266
9
7.8
9
75
16
60
58
4
2
34
1.31
38273818--38273847
5
6.0
5
100
0
60
20
0
0
80
0.72
38273981--38274066
41
2.0
41
82
12
104
54
6
3
34
1.44
38275552--38275579
2
14.0
2
100
0
56
50
0
0
50
1.00
38276886--38276943
19
2.8
19
80
14
71
37
0
0
62
0.96
38280008--38280059
20
2.7
20
81
18
65
30
0
7
61
1.24
38280464--38280508
23
2.0
23
82
8
56
26
11
8
53
1.65
38283475--38283551
35
2.2
34
82
11
86
19
18
29
32
1.95
38295019--38295045
13
2.1
13
100
0
54
51
14
14
18
1.76
38297104--38297175
25
2.9
25
81
8
83
55
5
8
30
1.52
38297486--38297512
11
2.5
11
100
0
54
25
7
0
66
1.17
38297550--38297611
30
2.0
31
90
3
99
29
3
9
58
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38297960--38298052
27
3.4
27
71
11
73
63
6
4
25
1.37
38299379--38299428
26
2.0
26
92
4
84
14
2
36
48
1.55
38307245--38307292
19
2.6
19
86
3
71
35
2
14
47
1.56
38307309--38307397
42
2.1
42
93
0
151
26
5
14
52
1.64
38308491--38308543
11
4.8
11
80
0
52
64
5
11
18
1.46
38309996--38310289
49
5.9
49
82
1
363
26
18
25
29
1.98
38314714--38314750
19
1.9
19
88
0
56
64
18
0
16
1.29
38314763--38314838
39
1.9
39
84
7
100
60
6
3
28
1.40
38314958--38315017
30
2.1
28
87
6
84
25
0
8
66
1.19
38314975--38315036
20
3.3
19
80
6
63
32
0
6
61
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325