genome.fa.s5.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  116  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36433582--36433702	60	2.1	59	89	4	183	52	2	0	44	1.20
36433592--36433705	57	1.9	59	89	5	178	52	3	0	42	1.24
36442532--36442596	29	2.2	29	81	10	71	55	4	13	26	1.58
36457786--36457836	20	2.5	20	78	6	59	52	0	5	41	1.25
36460746--36460771	13	2.0	13	100	0	52	38	46	7	7	1.61
36463145--36463187	17	2.4	17	84	7	50	67	2	4	25	1.22
36463161--36463248	19	4.7	19	72	8	65	63	3	3	29	1.27
36463151--36463258	9	11.6	9	66	18	51	63	2	3	29	1.25
36463583--36463749	87	1.9	87	82	3	212	34	7	17	40	1.78
36466011--36466061	18	2.9	17	77	8	57	29	1	3	64	1.22
36466234--36466308	31	2.5	31	91	2	116	44	13	13	29	1.82
36468244--36468415	86	2.0	84	97	2	326	33	14	25	27	1.94
36475911--36475964	3	18.3	3	77	11	58	64	0	35	0	0.94
36476114--36476149	16	2.2	18	85	14	51	16	0	13	69	1.19
36476445--36476527	16	5.1	16	75	8	62	69	2	6	21	1.21
36478992--36479106	33	3.5	32	82	4	133	24	41	15	18	1.89
36484972--36485057	45	2.0	42	84	6	109	50	32	2	15	1.57
36486318--36486451	3	46.7	3	69	14	50	34	7	1	56	1.36
36486318--36486355	19	2.0	20	89	5	60	28	7	0	63	1.23
36486358--36486400	16	2.7	15	86	10	59	32	6	0	60	1.23
36486523--36486547	3	8.3	3	100	0	50	32	0	0	68	0.90
36487539--36487586	21	2.2	22	81	7	53	35	6	6	52	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36490564--36490605	22	1.9	22	85	9	59	16	2	11	69	1.29
36492234--36492263	4	7.5	4	92	0	51	73	0	3	23	0.98
36492285--36492336	28	1.9	28	81	14	65	65	7	11	15	1.46
36492944--36492992	21	2.2	23	85	7	66	61	2	2	34	1.19
36495110--36495263	43	3.6	43	88	0	200	21	16	22	38	1.93
36495016--36495317	86	3.5	87	73	6	254	22	20	19	37	1.94
36501914--36501941	11	2.5	11	100	0	56	21	35	0	42	1.53
36507389--36507418	4	7.5	4	92	0	51	73	0	3	23	0.98
36508114--36508162	21	2.2	23	85	7	66	61	2	2	34	1.19
36511566--36511675	26	4.2	26	94	2	177	33	4	25	36	1.76
36513284--36513396	27	4.2	27	82	3	120	16	23	23	37	1.94
36513282--36513396	54	2.1	54	87	3	160	16	22	23	37	1.94
36517348--36517457	26	4.2	26	91	2	168	35	4	23	36	1.76
36518990--36519097	27	4.0	27	83	5	112	17	23	23	36	1.95
36519000--36519118	53	2.2	55	79	8	140	20	24	20	35	1.96
36528554--36528642	43	2.1	43	93	0	151	41	8	12	37	1.74
36530360--36530493	37	3.4	38	74	13	105	30	26	18	23	1.98
36531056--36531185	42	3.3	41	68	22	123	27	22	5	44	1.74
36531050--36531215	77	2.2	77	98	0	323	28	21	4	45	1.70
36532397--36532452	28	2.0	28	85	0	76	16	21	30	32	1.95
36532501--36532550	26	1.9	26	84	8	66	24	20	28	28	1.99
36532530--36532629	14	7.3	14	67	4	51	24	25	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36532558--36532687	28	4.6	28	72	11	95	24	22	21	31	1.98
36532723--36532800	36	2.2	36	83	4	104	29	16	19	34	1.94
36534648--36534691	17	2.4	19	88	7	65	38	0	0	61	0.96
36535843--36535875	2	16.5	2	100	0	66	51	0	0	48	1.00
36536806--36537209	226	1.8	217	81	5	504	30	5	15	47	1.69
36547718--36547819	41	2.5	40	84	4	143	37	15	16	30	1.90
36548168--36548220	5	10.6	5	100	0	106	60	39	0	0	0.97
36548278--36548316	19	2.1	19	95	0	69	38	28	15	17	1.91
36548688--36548732	10	4.4	10	80	5	54	0	22	2	75	0.91
36548838--36548876	19	2.0	20	85	5	53	43	7	5	43	1.55
36552463--36552576	24	4.7	24	75	12	99	27	17	28	26	1.98
36557915--36557952	14	2.7	14	95	0	67	47	13	2	36	1.56
36559829--36559873	19	2.3	20	81	14	58	37	2	6	53	1.40
36561014--36561060	15	3.2	15	74	17	53	61	2	2	34	1.20
36565238--36565279	19	2.2	20	82	4	50	45	0	0	54	0.99
36565880--36565906	12	2.2	12	100	0	54	40	7	0	51	1.30
36567549--36567724	62	2.8	61	80	7	192	30	26	16	27	1.97
36567549--36567725	63	2.8	64	81	3	198	30	25	16	27	1.97
36568324--36568422	47	2.1	47	83	3	119	21	20	23	35	1.96
36568486--36568552	18	3.6	18	73	11	53	40	5	13	40	1.69
36568476--36568626	39	3.9	39	85	1	205	38	11	13	36	1.81
36568507--36568563	18	2.8	20	69	15	55	42	8	12	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36569804--36569862	29	2.0	30	86	3	84	32	6	13	47	1.69
36571498--36571527	10	2.8	11	90	10	53	53	0	0	46	1.00
36572195--36572250	28	2.1	26	86	6	76	66	1	1	30	1.12
36572207--36572246	17	2.3	18	86	4	55	70	2	2	25	1.13
36576124--36576164	3	13.7	3	80	19	50	70	0	2	26	0.99
36617411--36617597	48	3.9	48	93	1	293	25	19	27	27	1.99
36617411--36617595	98	1.9	97	91	2	300	25	19	27	27	1.99
36621923--36621983	30	2.0	30	87	0	86	14	27	32	24	1.95
36623912--36623953	6	7.0	6	100	0	84	83	0	0	16	0.65
36623869--36623921	22	2.4	21	78	12	61	75	3	11	9	1.16
36623917--36623998	33	2.5	33	79	11	98	75	0	1	23	0.87
36623912--36623998	6	12.3	7	78	17	51	75	0	1	22	0.86
36623929--36624003	39	1.9	37	82	17	91	72	0	2	25	0.98
36624029--36624085	22	2.7	22	91	5	91	71	3	0	24	1.01
36627154--36627186	12	2.6	13	85	9	50	9	45	0	45	1.35
36627974--36628006	8	4.1	8	85	14	50	51	24	21	3	1.62
36628252--36628316	28	2.3	28	91	0	103	33	26	7	32	1.85
36628432--36628512	28	2.9	28	86	1	108	22	20	20	35	1.96
36628435--36628523	28	3.1	28	83	1	106	23	22	19	34	1.96
36628966--36629020	18	3.0	18	81	2	56	25	3	5	65	1.31
36631060--36631139	26	3.2	26	79	13	103	37	25	7	30	1.83
36633264--36633322	27	2.2	28	79	14	70	49	27	1	22	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36634289--36634345	14	3.9	14	74	4	51	22	5	3	68	1.25
36639414--36639471	26	2.2	26	93	0	98	36	24	5	34	1.78
36639805--36640000	106	1.8	106	96	0	365	37	10	13	38	1.80
36647191--36647237	19	2.4	19	85	3	58	65	4	2	27	1.22
36654476--36654516	20	2.0	21	90	4	66	0	26	0	73	0.84
36654735--36654784	21	2.5	19	72	27	50	48	2	0	50	1.12
36654910--36654956	19	2.4	21	79	13	55	48	4	0	46	1.21
36656622--36656761	30	4.9	28	77	11	117	32	21	2	42	1.67
36657351--36657428	37	2.1	37	85	0	102	16	2	38	42	1.62
36657777--36657805	14	2.0	15	93	6	51	37	0	0	62	0.96
36657944--36658011	22	3.1	22	75	12	68	33	5	4	55	1.44
36662049--36662224	46	3.8	46	78	10	196	19	21	30	28	1.98
36662045--36662217	93	1.9	93	92	0	292	20	21	30	27	1.98
36664607--36664635	4	7.2	4	100	0	58	24	24	0	51	1.48
36672019--36672182	44	3.7	43	91	4	242	45	15	23	15	1.85
36672019--36672182	89	1.9	87	88	7	251	45	15	23	15	1.85
36674664--36674952	48	6.0	48	92	0	488	37	6	24	31	1.81
36675085--36675194	37	3.0	37	94	0	193	23	19	31	25	1.98
36675825--36675897	35	2.1	35	100	0	146	39	16	10	32	1.83
36676947--36677210	76	3.5	74	79	11	268	32	15	19	32	1.93
36676947--36677246	74	4.0	74	78	10	236	30	15	19	34	1.93
36677277--36677554	80	3.5	77	80	5	283	28	16	20	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36677772--36677912	30	4.7	29	77	11	108	32	20	4	42	1.71
36678508--36678587	37	2.2	37	83	0	97	18	2	35	43	1.64
36689661--36689767	3	36.7	3	71	5	76	60	1	6	30	1.32
36693194--36693247	18	3.3	18	66	28	57	24	50	7	18	1.72
36693184--36693252	30	2.3	30	100	0	138	27	52	5	14	1.64
36693748--36693943	25	8.0	25	70	14	95	32	7	4	55	1.47
36693752--36693864	50	2.3	49	76	6	111	36	6	3	53	1.43
36694010--36694065	25	2.3	24	79	14	62	37	16	3	42	1.65
36695159--36695198	17	2.6	15	82	17	55	52	0	5	42	1.23
36700639--36700692	18	2.8	18	75	8	54	46	5	0	48	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325