genome.fa.s5.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  154  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48792497--48792641	40	3.6	40	85	4	193	23	26	24	25	2.00
48794577--48794619	21	2.0	21	86	0	59	20	18	16	44	1.87
48794879--48794935	30	1.9	30	92	0	96	28	17	10	43	1.82
48795600--48795638	21	1.9	20	84	5	51	25	2	23	48	1.63
48811311--48811362	27	2.0	26	84	3	68	21	26	17	34	1.95
48811292--48811438	67	2.2	67	89	4	226	22	29	19	28	1.98
48819652--48819759	52	2.1	52	91	0	171	29	9	25	35	1.87
48822144--48822239	24	3.9	25	78	9	92	32	17	23	26	1.97
48831081--48831136	26	2.2	26	100	0	112	30	7	26	35	1.83
48835120--48835224	43	2.4	43	85	3	131	33	26	17	22	1.96
48837699--48837867	55	3.1	54	78	2	205	20	23	17	38	1.93
48838753--48838792	20	2.0	20	100	0	80	30	10	5	55	1.54
48839991--48840237	41	6.1	40	80	6	244	24	19	28	27	1.99
48839984--48840237	82	3.1	80	82	6	278	24	20	27	27	1.99
48839991--48840215	123	1.8	123	83	0	297	24	19	28	28	1.98
48840421--48840494	22	3.4	21	77	5	76	25	1	27	45	1.61
48840486--48840532	14	3.3	14	80	14	51	14	0	44	40	1.46
48843788--48843813	3	8.7	3	100	0	52	34	0	0	65	0.93
48845578--48845624	24	2.0	24	95	0	85	25	4	19	51	1.65
48845765--48845808	22	1.9	22	86	9	61	56	4	0	38	1.20
48846793--48846856	27	2.4	24	74	20	65	31	21	29	17	1.96
48854251--48854448	49	3.9	50	82	2	227	25	18	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48854259--48854466	102	2.0	102	82	5	251	24	18	26	30	1.98
48866181--48866317	69	2.0	69	97	2	258	33	23	10	32	1.88
48872309--48872347	3	13.0	3	100	0	78	33	0	0	66	0.92
48886818--48886865	15	3.2	15	80	11	62	58	14	14	12	1.64
48895176--48895239	22	2.9	22	88	0	92	39	23	21	15	1.92
48895288--48895389	27	3.8	27	72	5	80	41	19	19	19	1.91
48895466--48895598	50	2.7	50	84	0	176	29	30	17	22	1.96
48895847--48895948	26	3.9	27	80	6	120	34	12	14	38	1.85
48895847--48895948	53	1.9	53	84	7	136	34	12	14	38	1.85
48900529--48900630	27	3.8	27	86	0	123	30	13	17	38	1.89
48904651--48904679	15	2.0	15	93	6	51	13	6	20	58	1.58
48908311--48908492	28	6.5	28	96	0	312	33	28	12	26	1.92
48919991--48920042	21	2.5	21	100	0	104	3	25	40	30	1.73
48920351--48920398	21	2.2	22	81	3	53	54	20	4	20	1.61
48921403--48921517	29	4.0	29	84	6	146	28	28	14	27	1.95
48921394--48921509	57	2.0	57	86	3	162	27	30	15	26	1.96
48925818--48925920	46	2.2	48	87	3	147	34	14	24	26	1.94
48928330--48928415	28	3.0	28	86	3	118	27	29	15	27	1.96
48929753--48929784	16	2.0	16	100	0	64	6	6	37	50	1.53
48930455--48930486	7	4.6	7	92	0	55	56	12	3	28	1.51
48932161--48932185	13	1.9	13	100	0	50	44	0	0	56	0.99
48935124--48936730	805	2.0	803	96	0	2935	40	22	9	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48938885--48939001	43	2.8	42	78	7	128	30	12	25	30	1.93
48943550--48943726	27	6.6	26	80	5	115	28	28	16	26	1.97
48943570--48943725	27	5.7	27	80	4	161	28	28	16	26	1.97
48943550--48943726	55	3.3	55	79	9	202	28	28	16	26	1.97
48943570--48943725	82	1.9	81	85	3	215	28	28	16	26	1.97
48951688--48951864	27	6.6	26	80	5	115	28	28	16	26	1.97
48951708--48951863	27	5.7	27	80	4	161	28	28	16	26	1.97
48951688--48951864	55	3.3	55	79	9	202	28	28	16	26	1.97
48951708--48951863	82	1.9	81	85	3	215	28	28	16	26	1.97
48967586--48967653	28	2.4	28	80	4	75	23	22	25	29	1.99
48970427--48970533	29	3.8	28	74	10	92	26	31	14	28	1.94
48970984--48971141	41	3.9	41	74	12	155	22	22	29	26	1.99
48976633--48976657	12	2.1	12	100	0	50	16	32	8	44	1.76
48979416--48979575	41	3.9	41	76	13	168	23	21	28	26	1.99
48983688--48983731	14	3.1	14	87	12	72	36	20	6	36	1.79
48988249--48988289	15	2.9	14	82	7	55	36	21	4	36	1.75
48989020--48989165	76	1.9	76	91	0	238	21	12	21	45	1.84
48990120--48990392	113	2.5	110	79	5	282	30	10	15	43	1.80
48990129--48990393	56	4.8	57	78	7	235	30	10	15	44	1.79
48990119--48990396	55	5.0	57	77	6	243	30	10	15	43	1.80
48997792--48997851	29	2.1	29	93	0	102	41	30	0	28	1.56
48997798--48997845	15	3.3	15	73	5	53	43	27	0	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48998068--48998092	9	2.8	9	100	0	50	84	8	8	0	0.79
48998539--48998594	30	1.9	28	85	7	76	53	3	30	12	1.55
49001827--49001886	29	2.1	29	93	0	102	41	30	0	28	1.56
49001833--49001880	15	3.3	15	73	5	53	43	27	0	29	1.55
49007939--49008080	57	2.5	56	87	5	196	30	23	17	28	1.97
49007958--49008136	57	3.1	57	84	2	180	31	22	16	28	1.96
49009483--49009705	119	1.9	120	83	6	292	25	27	21	24	1.99
49009481--49009705	40	5.7	40	84	6	278	25	28	21	24	1.99
49011653--49011915	40	6.7	40	86	5	304	24	21	27	26	1.99
49011653--49011915	79	3.3	79	84	8	279	24	21	27	26	1.99
49011653--49011913	119	2.2	119	84	5	332	24	21	27	26	1.99
49012256--49012295	17	2.4	17	100	0	80	12	27	12	47	1.77
49019902--49020125	119	1.9	120	84	6	303	25	27	22	25	2.00
49019900--49020127	40	5.7	40	86	6	293	25	27	21	25	2.00
49029841--49029985	43	3.4	43	74	11	127	28	16	24	29	1.97
49034241--49034448	67	3.2	64	76	10	197	32	16	28	22	1.96
49034741--49034895	28	5.6	27	72	11	127	30	15	29	24	1.96
49034754--49034902	54	2.7	55	85	4	203	31	16	28	23	1.96
49034741--49034920	56	3.2	56	82	4	231	29	17	28	24	1.97
49034825--49034928	28	3.7	28	78	7	104	29	21	26	22	1.99
49039231--49039274	15	2.9	15	89	0	70	56	13	13	15	1.67
49055062--49055282	40	5.6	40	87	6	274	24	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49055062--49055278	79	2.7	79	83	8	262	25	27	22	25	2.00
49058977--49059116	43	3.3	43	78	9	124	26	15	24	34	1.94
49066661--49066741	10	7.9	10	74	15	76	20	12	2	64	1.39
49066656--49066700	22	2.0	22	100	0	90	17	17	4	60	1.53
49068282--49068459	40	4.5	40	89	3	236	24	29	24	22	1.99
49074662--49074745	45	1.9	41	86	11	114	51	1	1	46	1.16
49079209--49079249	21	2.0	21	90	9	66	65	0	0	34	0.93
49079228--49079282	26	2.1	26	83	6	67	58	0	0	41	0.98
49079744--49079773	3	10.0	3	100	0	60	0	33	0	66	0.92
49079935--49080048	57	2.0	57	98	0	219	41	8	11	38	1.72
49088547--49088670	48	2.6	48	80	6	117	37	4	2	56	1.31
49088590--49088665	37	2.1	37	83	14	95	36	5	2	55	1.37
49091369--49091431	33	1.9	33	93	0	108	36	14	4	44	1.66
49104233--49104399	46	3.6	45	87	7	198	28	19	30	21	1.97
49105509--49105549	22	1.9	22	90	5	66	12	43	26	17	1.84
49107174--49107218	20	2.2	20	88	0	63	35	13	0	51	1.41
49107528--49107562	15	2.2	16	90	5	54	31	14	2	51	1.57
49110790--49110833	21	2.1	21	91	8	72	43	11	11	34	1.77
49111353--49111391	19	2.1	19	85	4	53	53	12	5	28	1.60
49115393--49115446	25	2.2	25	86	0	72	48	12	5	33	1.65
49116970--49117096	10	13.7	9	66	21	50	63	2	4	29	1.27
49117023--49117096	20	3.8	20	75	7	71	62	2	6	28	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49117321--49117406	9	9.4	9	76	13	70	32	1	3	62	1.19
49117322--49117407	18	4.8	18	75	11	79	33	1	3	61	1.20
49117322--49117407	26	3.2	27	83	11	122	33	1	3	61	1.20
49121472--49121542	23	3.0	23	95	4	133	33	8	29	28	1.86
49121472--49121545	24	3.1	24	98	1	141	35	8	28	28	1.86
49121856--49121880	5	5.0	5	100	0	50	20	0	0	80	0.72
49122604--49122635	8	4.1	8	92	8	57	25	0	0	75	0.81
49126204--49126244	20	2.0	20	85	0	55	43	14	19	21	1.87
49133405--49133479	28	2.7	28	87	0	96	33	13	28	25	1.93
49133869--49133919	25	2.0	25	81	7	59	35	1	25	37	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325