genome.fa.s5.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  207  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64536330--64536435	31	3.6	30	82	10	121	33	23	3	39	1.73
64536647--64536684	15	2.5	15	87	8	51	71	7	5	15	1.28
64537225--64537258	16	2.2	16	89	5	52	50	8	11	29	1.69
64537475--64537517	17	2.5	17	88	0	68	34	9	2	53	1.46
64540390--64540592	40	5.1	40	91	1	293	22	23	28	26	1.99
64543329--64543378	24	2.1	24	88	7	75	24	22	10	44	1.83
64549015--64549237	40	5.6	39	82	7	236	25	27	21	24	1.99
64549017--64549232	119	1.8	120	83	7	287	25	26	21	25	2.00
64554045--64554663	74	8.0	74	73	14	364	32	15	17	33	1.92
64554270--64554314	20	2.2	21	96	4	83	40	11	4	44	1.60
64554596--64554765	91	1.9	91	85	2	234	28	20	19	32	1.97
64554666--64554881	77	2.8	79	85	4	276	29	17	18	34	1.94
64554504--64554844	168	2.0	165	85	4	461	29	17	18	34	1.94
64554667--64555865	79	14.7	78	71	17	454	29	17	18	34	1.94
64554495--64555040	246	2.3	241	84	6	676	29	17	19	33	1.94
64554764--64555897	337	3.4	338	80	8	1162	30	17	18	34	1.94
64554764--64555865	169	6.6	169	85	6	1091	30	16	18	34	1.94
64555103--64555245	75	1.9	75	85	2	198	26	18	23	31	1.98
64555272--64555417	75	1.9	75	87	2	213	27	17	21	32	1.96
64555416--64555822	80	5.1	80	84	4	549	31	17	17	32	1.94
64555437--64555909	80	6.0	78	79	9	412	31	17	18	32	1.94
64555416--64555865	237	1.9	238	85	5	633	31	16	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64556078--64556178	29	3.4	30	79	2	105	34	20	2	41	1.68
64556390--64556441	15	3.6	14	89	7	77	61	19	7	11	1.53
64556988--64557022	16	2.2	16	90	5	54	48	8	11	31	1.69
64557228--64557289	17	3.8	17	76	16	51	37	6	1	54	1.36
64560354--64560439	39	2.2	39	87	0	118	36	1	29	33	1.65
64563895--64563984	45	2.0	45	95	0	162	44	21	5	28	1.74
64565320--64565352	16	2.1	16	88	5	50	6	45	0	48	1.27
64572609--64572639	14	2.1	15	94	5	55	54	9	6	29	1.57
64576080--64576372	101	2.9	100	82	1	345	25	17	25	31	1.97
64576080--64576372	50	5.8	50	82	2	336	25	17	25	31	1.97
64576080--64576369	151	1.9	152	90	3	460	25	17	25	31	1.97
64576126--64576407	151	1.9	150	86	0	402	25	17	26	30	1.97
64580553--64580719	46	3.6	45	80	7	183	22	29	19	28	1.98
64580457--64580719	140	1.9	139	83	8	345	23	28	19	28	1.98
64584908--64584948	21	2.0	21	100	0	82	31	29	14	24	1.95
64585054--64585131	41	1.9	41	97	0	147	37	19	10	33	1.85
64613651--64613715	28	2.3	28	86	0	94	38	9	23	29	1.85
64613788--64613892	39	2.7	39	83	4	122	20	22	26	30	1.98
64613823--64613909	40	2.2	39	85	6	113	16	20	29	33	1.94
64618066--64618244	85	2.1	85	98	0	349	37	8	27	26	1.85
64619502--64620033	47	11.6	47	90	6	722	32	9	29	28	1.88
64619502--64620033	224	2.3	230	85	8	712	32	9	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64619502--64620033	271	1.9	274	85	8	722	32	9	29	28	1.88
64619933--64620005	22	3.2	22	64	17	58	32	10	30	26	1.90
64636324--64636370	24	2.0	24	95	0	85	4	36	38	21	1.73
64636325--64636376	24	2.2	24	89	0	77	5	40	34	19	1.75
64636709--64636814	42	2.5	42	86	4	135	16	27	34	20	1.95
64636752--64637363	43	14.6	43	81	8	640	17	33	32	16	1.93
64636755--64637363	128	4.9	127	81	8	667	17	33	31	16	1.93
64636794--64637363	85	6.8	85	80	10	629	17	34	31	16	1.93
64637138--64637360	119	1.9	116	88	2	338	16	34	32	17	1.92
64637342--64637448	42	2.5	42	80	1	115	16	28	34	20	1.95
64637338--64637514	43	4.1	43	72	11	130	15	27	37	19	1.92
64637248--64637478	43	5.4	42	77	9	177	16	28	34	20	1.95
64641193--64641291	42	2.4	41	81	8	119	18	30	32	19	1.95
64641271--64642284	128	7.9	128	84	5	1135	16	33	31	17	1.93
64641271--64642284	85	11.9	85	84	6	1110	16	33	31	17	1.93
64641271--64642284	43	23.8	43	85	4	1150	16	33	31	17	1.93
64655888--64655965	24	3.2	24	79	0	93	7	38	33	20	1.81
64656287--64656392	42	2.5	42	84	4	135	16	28	34	19	1.94
64656378--64656994	43	14.5	43	85	4	761	17	33	31	17	1.93
64656254--64656997	85	8.8	85	81	7	726	17	32	31	17	1.94
64656254--64656997	128	5.8	128	82	6	821	17	32	31	17	1.94
64664775--64664842	24	2.8	24	79	0	73	7	38	32	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64665182--64665279	42	2.3	41	79	5	106	18	30	31	19	1.96
64665259--64665930	85	7.9	85	80	6	603	17	32	32	17	1.94
64665141--64665953	170	4.8	170	80	4	734	17	31	31	18	1.95
64665141--64665930	43	18.6	43	79	6	652	17	31	31	18	1.94
64665813--64665989	43	4.1	43	76	9	155	15	27	37	19	1.92
64672455--64672525	24	3.0	24	85	6	90	7	36	35	21	1.80
64672906--64673566	43	15.5	43	84	2	692	18	32	31	17	1.95
64672954--64673566	85	7.2	86	83	4	677	18	33	30	17	1.94
64672907--64673566	128	5.2	128	81	6	678	18	32	30	17	1.95
64672943--64673566	213	2.9	213	81	5	715	18	32	31	17	1.94
64673585--64674313	47	15.3	47	95	2	1278	32	8	29	29	1.87
64673585--64674313	96	7.6	94	95	2	1278	32	8	29	29	1.87
64673584--64674313	143	5.1	142	96	1	1261	32	8	29	29	1.87
64674432--64674510	37	2.1	37	90	0	122	24	18	31	25	1.98
64688218--64688242	13	1.9	13	100	0	50	8	24	44	24	1.80
64689457--64689494	20	1.9	20	88	0	58	47	10	13	28	1.76
64693069--64693117	22	2.2	22	82	7	55	77	8	8	6	1.12
64693660--64693724	13	5.0	13	78	14	62	76	3	0	20	0.91
64693676--64693700	8	3.1	8	100	0	50	76	0	0	24	0.80
64693663--64693730	6	10.7	6	82	7	66	79	1	0	19	0.81
64694854--64695036	64	2.9	63	85	3	240	30	18	13	37	1.90
64695638--64695733	44	2.2	46	81	9	110	27	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64695235--64695792	180	3.1	176	88	4	825	29	18	24	27	1.98
64700898--64701005	40	2.7	40	95	0	189	25	22	27	25	2.00
64700901--64701027	40	3.2	40	89	0	146	23	22	28	25	1.99
64708742--64708858	40	3.0	40	94	1	200	22	19	29	28	1.98
64709457--64709510	11	4.6	12	74	17	51	61	0	0	38	0.96
64709572--64709632	3	21.0	3	72	24	51	67	1	0	31	1.01
64709696--64709792	28	3.5	29	76	16	73	69	2	2	26	1.11
64709694--64709785	21	4.3	21	69	17	55	68	2	2	27	1.13
64709708--64709786	41	1.9	42	82	12	101	70	2	2	24	1.11
64709874--64709984	32	3.7	27	74	23	82	68	0	0	30	0.96
64709863--64709955	33	2.9	32	85	7	118	66	0	0	33	0.92
64709694--64709952	19	11.9	21	63	21	63	65	0	1	32	1.09
64709869--64710002	33	4.1	32	78	12	103	69	0	0	29	0.94
64709972--64709997	12	2.2	12	100	0	52	84	0	0	15	0.62
64709987--64710057	27	2.4	29	86	13	94	60	2	2	33	1.26
64710127--64710235	28	3.8	28	75	18	91	64	0	1	33	1.11
64710127--64710224	32	3.4	28	77	18	94	65	1	2	31	1.11
64710188--64710279	34	2.7	35	74	15	95	65	0	0	34	0.93
64710312--64710405	34	2.7	34	79	12	93	60	1	2	36	1.16
64710491--64710671	63	2.9	62	78	11	162	59	2	1	37	1.17
64710518--64710611	30	3.0	29	75	12	80	59	2	0	38	1.09
64710600--64710671	14	4.8	15	76	23	64	63	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64710451--64710638	102	1.9	98	80	12	222	57	1	1	39	1.15
64710524--64710688	60	2.7	63	76	19	159	61	3	0	34	1.13
64710858--64711000	26	5.5	26	70	12	82	72	0	0	26	0.95
64710859--64710979	24	5.1	24	69	22	69	70	0	0	28	0.99
64710896--64711052	78	2.0	82	81	13	193	69	1	1	28	1.04
64710897--64711007	14	7.2	15	72	18	86	71	0	0	27	0.98
64710889--64711012	15	8.2	16	70	18	79	71	0	0	26	0.96
64710938--64711067	51	2.5	50	80	14	131	67	0	1	30	1.05
64710938--64711017	3	28.3	3	74	20	59	71	0	0	28	0.87
64711180--64711390	18	11.5	19	68	24	68	64	2	0	32	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325