genome.fa.s5.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  135  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42167491--42167724	48	5.0	48	79	7	264	27	23	21	26	1.99
42167491--42167724	91	2.5	94	84	4	278	27	23	21	26	1.99
42169705--42169746	22	2.0	21	85	4	57	28	0	21	50	1.49
42170189--42170241	23	2.2	24	86	3	72	22	24	13	39	1.90
42185567--42185724	43	3.7	43	78	8	160	27	16	24	31	1.96
42188271--42188368	27	3.6	27	95	0	169	30	14	16	38	1.88
42188361--42188431	27	2.6	27	74	14	74	47	19	14	18	1.82
42188514--42188563	23	2.2	23	86	13	68	26	14	18	42	1.87
42189191--42189280	33	2.7	33	91	3	146	26	22	16	34	1.95
42189350--42189463	47	2.4	47	83	4	122	29	30	12	27	1.93
42189365--42189472	47	2.3	48	83	3	137	31	26	10	31	1.89
42189491--42189670	31	5.8	31	83	0	234	28	26	17	27	1.97
42189646--42189819	50	3.5	50	83	0	222	27	22	16	34	1.95
42196297--42196344	21	2.3	21	81	0	51	45	2	16	35	1.59
42196466--42196507	22	2.0	21	90	4	66	26	0	23	50	1.50
42201772--42201930	43	3.7	43	81	9	173	24	18	25	32	1.97
42208628--42208668	19	2.3	19	88	12	61	43	0	17	39	1.49
42209294--42209402	49	2.2	49	78	15	118	30	19	27	22	1.98
42212425--42212589	43	3.9	42	79	8	172	24	17	25	32	1.97
42212426--42212589	42	3.8	42	80	6	152	25	17	25	31	1.97
42212766--42212798	17	1.9	17	100	0	66	48	18	0	33	1.48
42214321--42214440	46	2.6	46	88	5	163	30	20	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42221918--42222011	42	2.2	42	79	9	102	31	24	12	30	1.93
42223529--42223576	8	6.0	8	78	7	53	66	0	0	33	0.92
42223546--42223576	15	2.0	16	93	6	55	70	0	0	29	0.87
42225245--42225283	19	2.1	19	90	9	62	48	0	7	43	1.31
42227530--42227593	13	4.9	13	77	11	60	29	6	26	37	1.81
42240154--42240196	19	2.3	18	84	4	50	41	32	13	11	1.81
42240240--42240290	17	3.0	17	82	5	59	33	21	19	25	1.97
42244666--42244759	49	1.9	49	86	0	134	27	5	30	36	1.79
42250990--42251076	43	2.0	43	93	0	147	36	24	13	25	1.92
42261285--42261370	25	3.4	26	82	9	99	25	30	16	27	1.97
42263726--42263785	17	3.5	17	75	6	50	38	31	13	16	1.87
42265305--42265347	22	2.0	22	95	0	77	53	6	9	30	1.59
42265544--42265573	15	2.1	15	93	6	53	70	10	6	13	1.34
42265777--42265854	27	3.2	24	71	22	63	58	3	5	32	1.38
42265752--42265804	24	2.1	24	82	10	61	62	3	1	32	1.24
42266147--42266294	25	6.4	23	75	18	114	60	4	3	32	1.32
42266172--42266250	23	3.5	23	71	16	58	62	2	1	34	1.17
42270285--42270363	25	3.3	25	61	10	65	32	5	29	32	1.79
42270276--42270556	47	5.9	47	91	1	436	32	8	30	28	1.87
42270276--42270556	96	3.0	94	91	2	445	32	8	30	28	1.87
42270276--42270545	143	1.9	143	93	0	468	31	8	30	28	1.88
42270675--42270753	37	2.1	37	85	0	104	25	18	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42272415--42272444	16	1.9	15	93	6	51	23	0	0	76	0.78
42272406--42272459	14	4.2	14	76	23	57	27	0	3	68	1.06
42272507--42272620	60	1.9	59	82	8	142	33	7	7	51	1.58
42272854--42272891	18	2.1	19	85	14	53	23	0	5	71	1.07
42272956--42273034	26	3.0	25	72	26	65	32	10	2	54	1.47
42275035--42275359	110	3.0	110	81	1	368	26	14	24	33	1.94
42276669--42276875	39	5.3	39	92	0	315	20	26	20	32	1.97
42285792--42285834	19	2.3	19	83	0	50	67	2	4	25	1.22
42285773--42285851	29	2.8	28	82	5	79	63	2	2	31	1.21
42286153--42286280	29	4.5	29	72	12	104	35	1	2	60	1.19
42286154--42286291	9	14.7	9	65	13	55	34	2	2	60	1.21
42286161--42286282	56	2.2	57	80	7	142	35	1	2	60	1.20
42286153--42286292	28	4.9	28	74	10	115	35	2	2	60	1.20
42286423--42286633	92	2.4	86	81	10	221	37	13	15	34	1.86
42288594--42288654	26	2.3	26	82	2	77	29	19	8	42	1.80
42290535--42290583	25	2.0	25	88	4	73	26	10	8	55	1.61
42291114--42291200	29	2.8	30	77	11	95	62	8	3	26	1.39
42296407--42296455	20	2.5	19	83	6	62	48	0	0	51	1.00
42302089--42302203	51	2.3	51	90	0	176	29	20	15	34	1.93
42305602--42305712	50	2.2	52	90	3	181	32	13	13	40	1.84
42308762--42308794	16	2.1	16	94	0	57	0	21	0	78	0.75
42308897--42308940	21	2.1	21	95	0	79	40	4	11	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42314835--42314874	21	1.9	21	84	0	53	35	35	7	22	1.82
42318427--42318555	40	3.2	39	81	12	163	24	20	27	27	1.99
42325908--42326053	40	3.7	40	84	7	197	23	25	26	25	2.00
42325901--42326054	80	1.9	80	91	0	254	24	24	26	25	2.00
42336245--42336286	14	2.9	14	92	3	66	30	0	7	61	1.22
42339137--42339187	20	2.7	18	82	14	59	43	0	19	37	1.51
42339883--42340054	94	1.8	95	84	1	238	31	19	23	24	1.98
42339883--42340054	48	3.6	48	77	7	179	31	19	23	24	1.98
42340071--42340198	49	2.6	49	83	2	150	27	21	28	21	1.99
42346069--42346242	27	6.4	27	79	2	188	39	15	10	34	1.83
42346064--42346242	81	2.2	81	85	3	227	38	17	10	33	1.84
42346236--42346352	27	4.3	27	87	2	155	35	16	21	26	1.94
42346209--42346352	54	2.7	54	82	2	128	35	17	19	27	1.94
42347271--42347336	24	2.6	25	76	19	66	34	7	0	57	1.27
42349731--42349911	64	2.8	62	76	14	181	24	30	16	28	1.96
42352359--42352442	27	3.2	27	81	8	84	22	21	20	35	1.96
42352633--42352730	32	3.0	33	81	4	99	26	21	24	27	1.99
42363379--42363492	57	2.0	58	81	3	133	27	20	9	42	1.83
42367836--42367900	30	2.2	30	94	0	112	21	38	21	18	1.93
42371080--42371160	39	2.1	39	100	0	162	27	22	12	38	1.90
42375018--42375082	29	2.3	29	83	2	78	29	24	3	43	1.69
42388307--42388368	28	2.3	27	77	2	70	19	25	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42388330--42388401	33	2.1	34	82	7	85	25	25	25	25	2.00
42389192--42389229	20	2.0	20	89	5	60	21	13	13	52	1.73
42391877--42391908	2	16.0	2	93	0	55	50	46	3	0	1.17
42397858--42397893	17	2.1	17	100	0	72	27	33	5	33	1.80
42405421--42405834	207	2.0	207	93	0	702	30	29	13	26	1.94
42410130--42410450	49	6.7	48	98	1	540	31	8	30	29	1.87
42410568--42410646	37	2.1	37	88	0	113	24	17	31	26	1.97
42426952--42426993	22	2.0	21	86	9	59	59	0	9	30	1.29
42432672--42432723	21	2.5	21	79	14	63	36	0	19	44	1.51
42432925--42432957	17	1.9	17	93	0	57	39	21	18	21	1.93
42441408--42441438	16	1.9	16	100	0	62	12	9	6	70	1.31
42443024--42443099	37	2.1	36	83	11	93	42	0	2	55	1.14
42444332--42444424	47	2.0	47	97	0	177	29	10	19	40	1.85
42445592--42445695	51	2.0	51	100	0	208	38	11	28	21	1.88
42453010--42453068	27	2.2	27	78	6	66	18	20	25	35	1.95
42459522--42459586	27	2.4	28	87	5	89	18	23	23	35	1.96
42469608--42469748	27	5.2	26	82	6	165	17	24	22	35	1.95
42469608--42469748	54	2.6	53	89	2	210	17	24	22	35	1.95
42476549--42476574	13	2.0	13	100	0	52	15	30	15	38	1.88
42479456--42479481	13	2.0	13	100	0	52	15	30	15	38	1.88
42485911--42485984	36	2.0	37	92	5	123	27	14	10	47	1.78
42487578--42487620	16	2.7	15	89	7	59	41	13	2	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42489145--42489194	20	2.5	20	93	0	82	10	26	44	20	1.82
42490221--42490412	93	2.1	94	98	1	377	43	17	9	29	1.81
42493841--42493922	41	2.0	41	92	0	137	29	10	9	50	1.70
42494576--42494609	12	3.0	12	87	12	54	29	0	0	70	0.87
42494727--42494789	30	2.1	30	91	5	101	58	11	4	25	1.51
42496924--42497004	32	2.5	32	90	4	128	27	1	19	51	1.54
42498095--42498171	24	3.3	23	71	20	63	29	9	20	40	1.83
42498089--42498176	46	1.9	46	92	0	149	30	9	19	40	1.82
42498089--42498188	46	2.2	46	88	0	146	31	10	19	40	1.84
42505238--42505280	18	2.4	18	96	0	77	51	0	2	46	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325