genome.fa.s5.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  166  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52474907--52475020	38	3.0	39	81	8	128	31	12	12	43	1.79
52488099--52489123	512	2.0	512	99	0	2014	32	17	21	28	1.96
52490438--52490501	32	2.0	32	100	0	128	43	15	15	25	1.86
52494330--52494421	40	2.3	40	94	0	157	34	17	19	28	1.94
52494330--52494465	40	3.4	39	81	9	134	33	16	21	28	1.95
52497905--52498031	64	2.0	64	93	0	218	48	13	11	27	1.76
52498292--52498321	13	2.3	13	100	0	60	13	20	10	56	1.65
52503255--52503377	52	2.4	51	87	2	185	27	21	21	28	1.99
52503255--52503377	26	4.8	26	86	1	160	27	21	21	28	1.99
52508110--52508187	40	1.9	41	89	2	122	32	23	16	28	1.96
52508400--52508482	42	2.0	42	92	4	141	39	18	3	38	1.68
52511555--52511579	9	2.8	9	100	0	50	28	0	12	60	1.32
52511578--52511694	39	3.0	39	81	7	114	30	11	10	47	1.72
52513687--52513846	56	2.9	56	81	5	182	20	18	32	28	1.96
52521400--52521433	10	3.3	10	92	8	59	35	17	17	29	1.93
52521394--52521446	21	2.5	20	81	3	61	37	18	13	30	1.89
52521480--52521546	25	2.7	25	97	0	125	26	28	23	20	1.99
52521768--52521879	31	3.6	31	85	9	156	31	17	25	25	1.97
52529006--52529056	25	2.0	25	85	7	68	29	21	19	29	1.98
52529100--52529133	10	3.3	10	92	8	59	35	17	17	29	1.93
52529094--52529146	21	2.5	20	81	3	61	37	18	13	30	1.89
52540820--52541030	40	5.3	40	79	3	239	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52540824--52541038	80	2.7	79	87	3	299	24	20	27	26	1.99
52544254--52544314	30	2.0	30	83	0	77	31	22	8	37	1.84
52552544--52552622	40	1.9	42	82	10	101	21	21	13	43	1.87
52555193--52555244	24	2.2	24	100	0	104	61	3	19	15	1.48
52563823--52563984	43	3.8	43	76	9	152	24	19	25	30	1.98
52568141--52568334	99	2.0	99	81	4	230	24	21	30	24	1.99
52570444--52570502	30	2.0	30	93	0	100	33	16	25	23	1.96
52570924--52571037	46	2.5	46	84	7	142	28	19	28	23	1.98
52572116--52572165	21	2.4	21	86	0	64	20	38	22	20	1.94
52579696--52579875	47	3.9	45	77	13	163	27	19	28	23	1.98
52579695--52579875	94	1.9	94	87	6	269	27	19	29	23	1.98
52593552--52593778	40	5.7	40	94	0	400	21	28	20	29	1.98
52602990--52603054	28	2.3	28	94	0	112	33	27	7	30	1.85
52603160--52603250	28	3.2	28	90	4	139	20	24	23	31	1.98
52603160--52603275	56	2.1	55	80	9	128	20	24	20	34	1.97
52603714--52603752	19	2.1	19	85	0	51	15	5	7	71	1.26
52610843--52610907	28	2.3	28	92	5	105	33	26	7	32	1.85
52611007--52611097	28	3.2	28	90	4	139	20	24	23	31	1.98
52611007--52611122	56	2.1	55	82	9	137	19	24	21	34	1.96
52611560--52611598	19	2.1	19	85	0	51	15	5	7	71	1.26
52621325--52621435	27	4.1	27	86	5	145	36	21	26	16	1.94
52624594--52624936	47	7.2	47	91	2	524	32	11	29	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52624594--52624976	47	8.1	47	87	4	384	32	11	30	26	1.91
52624594--52624976	141	2.7	142	86	3	520	32	11	30	26	1.91
52624960--52625086	46	2.8	46	88	0	182	35	8	30	25	1.86
52626947--52627047	24	4.2	24	93	0	166	25	40	0	32	1.63
52633283--52633382	27	3.7	27	85	6	132	36	22	25	17	1.95
52634805--52634904	24	4.2	24	93	0	155	25	40	1	34	1.62
52636677--52636716	20	2.0	20	85	0	53	12	27	20	40	1.88
52638019--52638056	20	1.9	20	88	0	58	13	21	34	31	1.91
52657448--52657518	25	2.9	24	78	4	70	57	2	29	9	1.45
52657497--52657591	31	3.0	31	84	7	113	53	10	15	20	1.71
52658651--52658694	23	1.9	23	85	0	61	38	2	6	52	1.41
52661421--52661604	40	4.6	40	82	9	207	24	22	27	25	2.00
52661476--52661627	79	1.9	79	84	7	202	26	20	26	26	1.99
52668831--52668960	44	3.0	43	77	12	131	23	16	27	32	1.96
52668846--52668962	43	2.7	44	79	13	134	23	16	29	31	1.96
52671963--52672104	43	3.3	41	90	5	212	23	16	26	32	1.96
52672066--52672239	56	3.1	56	84	0	206	26	14	25	32	1.95
52673500--52673705	45	4.7	45	83	5	253	23	20	29	26	1.99
52673499--52673711	88	2.4	88	85	5	279	24	20	29	26	1.99
52680215--52680311	43	2.2	44	92	3	160	26	18	25	28	1.98
52680215--52680340	44	2.9	43	87	3	162	26	19	26	27	1.99
52690987--52691102	56	2.1	56	88	0	169	30	13	24	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52705556--52705675	46	2.6	46	90	4	188	30	27	20	20	1.98
52708953--52709022	35	2.0	35	86	5	97	30	22	20	27	1.98
52709061--52709119	23	2.6	23	94	0	100	28	49	3	18	1.64
52711859--52711909	26	2.0	26	88	0	75	62	0	27	9	1.26
52718633--52718738	52	2.0	52	98	0	203	36	10	14	38	1.80
52719082--52719137	18	2.9	18	76	21	60	41	7	1	50	1.40
52727976--52728134	44	3.7	44	69	12	114	32	24	17	25	1.97
52736011--52736048	18	2.1	18	90	0	58	52	10	18	18	1.73
52736011--52736070	6	9.8	6	71	10	50	50	13	20	16	1.78
52736333--52736386	22	2.5	22	79	11	74	33	22	24	20	1.97
52736900--52737007	27	4.0	27	81	0	126	25	21	17	35	1.95
52736904--52737016	54	2.1	53	83	4	145	27	20	15	37	1.92
52739073--52739166	6	15.3	6	72	16	77	47	13	19	19	1.82
52739094--52739166	31	2.4	31	95	0	128	46	13	20	19	1.83
52739420--52739479	22	2.7	23	82	12	72	36	21	21	20	1.95
52739607--52739648	14	3.1	14	75	6	50	23	26	21	28	1.99
52739996--52740103	27	4.0	27	81	0	126	24	21	18	36	1.95
52739984--52740097	54	2.1	54	81	3	131	26	20	21	32	1.97
52740000--52740102	54	1.9	53	90	2	161	24	21	17	36	1.94
52740095--52740198	27	3.9	27	70	5	75	33	6	23	36	1.81
52741932--52742114	67	2.8	64	78	8	201	30	16	30	22	1.96
52741908--52742061	67	2.3	64	83	7	182	33	16	28	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52753104--52753144	20	2.0	20	100	0	82	34	4	34	26	1.78
52759019--52759048	15	2.0	15	100	0	60	73	6	6	13	1.24
52761258--52761311	23	2.2	25	78	15	60	62	3	22	11	1.43
52765925--52765950	13	2.0	13	100	0	52	23	30	30	15	1.95
52796150--52796370	40	5.6	40	81	7	247	25	21	25	27	1.99
52804390--52804610	40	5.6	40	82	5	236	26	22	24	26	2.00
52804390--52804610	80	2.8	78	84	6	273	26	22	24	26	2.00
52808163--52808380	38	5.7	38	87	5	298	22	22	24	30	1.99
52808163--52808380	75	2.8	77	87	5	309	22	22	24	30	1.99
52808378--52808575	43	4.6	43	94	0	351	11	25	32	30	1.90
52811158--52811325	41	4.1	41	75	7	126	27	29	20	22	1.98
52811172--52811317	41	3.6	41	80	5	145	27	28	21	22	1.99
52841407--52841466	29	2.0	29	83	3	75	31	23	8	36	1.84
52843672--52843706	10	3.5	10	84	0	52	40	25	22	11	1.88
52845215--52845259	22	2.0	22	95	0	81	35	2	13	48	1.54
52845909--52845965	17	3.9	15	80	17	57	3	21	3	71	1.15
52845924--52845965	14	3.1	13	86	10	57	2	21	2	73	1.06
52845930--52845965	13	2.6	14	91	4	56	2	19	2	75	1.06
52850539--52850575	12	3.1	12	88	0	56	13	27	0	59	1.35
52850723--52850757	17	2.1	17	100	0	70	22	11	14	51	1.74
52857756--52857981	27	8.4	27	78	7	201	41	17	13	27	1.87
52857783--52857981	81	2.5	81	85	1	274	41	16	13	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52857963--52858132	27	6.3	27	88	2	245	22	17	18	42	1.89
52857963--52858113	80	1.9	80	91	0	248	22	17	18	41	1.90
52858903--52858999	30	3.2	30	76	2	106	27	16	27	27	1.97
52861223--52861307	30	2.8	29	83	13	109	14	21	0	64	1.28
52861221--52861306	6	14.5	6	68	6	50	13	20	0	65	1.27
52861258--52861313	18	3.1	18	79	5	60	8	19	1	69	1.24
52861221--52861307	12	7.2	12	76	5	59	13	20	0	65	1.26
52861310--52861340	12	2.6	12	100	0	62	25	16	12	45	1.83
52861388--52861444	5	11.0	5	75	20	55	3	17	1	77	1.00
52861388--52861444	16	3.7	14	82	15	60	3	17	1	77	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325