genome.fa.s5.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  161  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50964393--50964617	42	5.2	42	73	10	159	28	16	26	29	1.97
50968376--50968476	40	2.4	41	82	9	125	22	13	29	33	1.93
50968460--50968562	28	3.7	28	93	0	161	23	10	33	32	1.89
50981903--50981982	41	2.0	41	89	0	124	28	32	20	18	1.96
50982255--50982573	27	11.8	26	76	13	161	30	8	18	42	1.81
50982269--50982573	54	5.6	54	80	8	259	30	8	19	41	1.81
50982269--50982573	81	3.7	79	79	8	285	30	8	19	41	1.81
50982570--50982672	27	3.9	27	87	1	145	29	21	16	33	1.95
50982563--50982671	54	2.0	53	91	1	173	29	21	17	32	1.96
50992912--50992954	22	1.9	23	90	4	70	16	6	0	76	0.99
50995535--50995559	11	2.3	11	100	0	50	44	0	12	44	1.41
50996178--50996237	26	2.3	26	91	0	93	38	13	28	20	1.90
50997320--50997356	19	1.9	19	88	0	56	35	2	40	21	1.68
50997333--50997391	28	2.1	28	93	3	102	52	1	30	15	1.52
50997339--50997397	28	2.1	27	87	3	82	49	1	30	18	1.58
50997305--50997464	82	2.0	78	86	6	221	45	1	32	21	1.60
50997511--50997579	27	2.4	29	81	11	90	52	1	27	18	1.54
50997944--50997984	16	2.6	16	88	0	55	36	7	29	26	1.83
50998286--50998331	16	2.7	17	83	6	58	63	2	0	34	1.07
50998289--50998332	12	3.7	12	81	6	54	61	2	0	36	1.09
50998286--50998325	20	1.9	20	85	10	53	65	2	0	32	1.06
51002960--51003175	40	5.5	40	90	3	316	23	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51015060--51015084	12	2.1	12	100	0	50	16	8	16	60	1.58
51015804--51016070	50	5.6	49	73	13	204	30	19	26	22	1.98
51024774--51024843	33	2.1	33	97	0	131	30	15	11	42	1.82
51027203--51027281	31	2.5	31	91	0	122	30	26	15	27	1.96
51027305--51027396	42	2.2	42	92	0	148	34	21	14	29	1.93
51027531--51027614	25	3.4	24	80	9	71	23	22	23	29	1.99
51027544--51027613	25	2.8	25	86	4	88	22	22	27	27	1.99
51028515--51028623	27	3.9	27	71	15	78	33	9	16	40	1.80
51028579--51028678	27	3.7	27	71	12	80	28	8	20	44	1.79
51028707--51028774	27	2.5	27	87	0	100	44	2	23	29	1.68
51028707--51028798	27	3.4	27	81	3	96	41	5	23	29	1.77
51028778--51028837	27	2.2	27	82	5	68	30	10	20	40	1.85
51034293--51034402	37	3.0	37	91	0	175	26	30	18	24	1.98
51034535--51035311	48	16.2	48	94	0	1304	31	24	6	37	1.81
51038513--51038542	13	2.3	13	100	0	60	46	13	10	30	1.75
51040716--51040821	43	2.5	43	73	3	106	24	14	26	34	1.93
51046575--51046686	27	4.1	27	84	7	138	15	24	23	37	1.93
51046575--51046686	54	2.1	54	88	3	163	15	24	23	37	1.93
51053106--51053310	40	5.2	40	89	4	276	27	27	20	23	1.99
51057857--51057967	27	4.1	27	79	8	120	16	23	22	37	1.93
51057857--51057967	54	2.1	53	83	5	134	16	23	22	37	1.93
51061003--51061226	40	5.7	40	81	7	224	25	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51060970--51061226	40	6.5	38	78	10	200	24	28	21	26	1.99
51061003--51061226	79	2.8	78	78	9	213	25	28	21	25	1.99
51061158--51061235	40	1.9	41	82	10	97	26	28	20	24	1.99
51074739--51074940	79	2.6	79	88	7	288	26	27	21	23	1.99
51074739--51074940	40	5.2	40	90	5	290	26	27	21	23	1.99
51079489--51079594	27	3.9	27	80	7	117	16	23	21	37	1.93
51079486--51079600	54	2.1	54	82	3	142	15	24	22	37	1.93
51090382--51090477	47	2.0	47	92	4	158	30	11	13	44	1.79
51091292--51091465	45	3.9	45	87	1	244	23	22	27	26	1.99
51098005--51098147	47	3.0	47	93	0	241	29	11	14	44	1.80
51098950--51099170	45	5.0	45	78	3	189	24	22	26	26	2.00
51099699--51099731	16	1.9	18	88	11	52	24	15	12	48	1.78
51104519--51104589	28	2.5	28	84	4	99	32	26	12	28	1.93
51111037--51111158	46	2.6	47	84	5	147	26	22	14	36	1.93
51115667--51116004	42	7.6	41	75	16	209	29	24	16	29	1.96
51115791--51115984	48	4.0	48	89	2	284	29	24	15	29	1.96
51117376--51117542	52	3.2	52	78	10	169	26	15	25	31	1.96
51132229--51132428	52	3.9	52	78	10	173	24	16	28	30	1.96
51134761--51134933	46	3.7	46	76	13	192	22	19	27	30	1.98
51134758--51134928	93	1.8	93	93	0	297	22	19	28	29	1.98
51137895--51137949	15	3.7	15	83	11	78	12	14	10	61	1.56
51140348--51140520	46	3.7	46	78	13	210	21	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51140345--51140515	93	1.8	93	96	0	315	21	21	28	28	1.99
51143464--51143519	15	3.7	15	83	7	78	12	14	10	62	1.55
51145913--51146082	46	3.8	45	78	10	195	22	20	28	29	1.98
51150110--51150134	13	1.9	13	100	0	50	20	40	24	16	1.91
51162965--51162994	14	2.1	14	100	0	60	43	20	13	23	1.86
51167632--51167661	15	1.9	16	93	6	53	46	0	0	53	1.00
51167850--51167880	12	2.7	11	90	9	53	19	0	12	67	1.22
51170411--51170442	5	6.4	5	100	0	64	40	0	0	59	0.97
51173398--51173574	40	4.4	40	81	4	207	26	25	22	24	2.00
51173413--51173569	80	2.0	80	88	2	235	28	25	21	24	1.99
51183851--51184058	46	4.5	46	78	10	210	22	20	27	29	1.98
51186647--51186703	30	1.9	29	89	3	87	10	14	17	57	1.64
51186650--51186704	15	3.8	14	76	9	56	9	12	18	60	1.58
51189432--51189652	46	4.8	46	74	9	209	24	19	25	30	1.98
51189431--51189601	93	1.8	93	85	0	243	24	19	26	29	1.98
51193017--51193064	16	2.9	16	84	3	60	41	39	8	10	1.69
51193023--51193064	8	5.2	8	82	0	57	42	35	9	11	1.74
51194762--51195188	27	15.8	27	84	0	494	28	19	9	43	1.81
51195180--51195242	27	2.3	27	83	0	81	36	15	19	28	1.92
51195467--51195549	27	3.1	26	89	5	121	19	22	21	36	1.95
51195657--51195715	22	2.7	22	81	0	64	20	25	22	32	1.98
51196070--51196160	6	14.8	6	73	13	78	18	20	12	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51196076--51196143	19	3.6	19	82	11	95	19	22	13	45	1.84
51196070--51196160	37	2.5	37	92	0	146	18	20	12	48	1.80
51197300--51197350	8	6.4	8	83	0	66	49	19	23	7	1.74
51197300--51197350	24	2.1	24	92	0	84	49	19	23	7	1.74
51197561--51197674	29	4.0	29	80	8	119	28	14	28	28	1.96
51197573--51197683	58	1.9	58	87	1	161	27	15	28	27	1.96
51198752--51198786	18	2.0	18	88	5	54	37	20	14	28	1.91
51199047--51199074	12	2.3	12	100	0	56	17	14	32	35	1.90
51202254--51202353	51	2.0	51	82	4	121	33	26	16	25	1.96
51204522--51204565	21	2.1	21	82	0	52	40	9	15	34	1.79
51204531--51204573	21	2.0	21	90	0	68	39	9	13	37	1.78
51207562--51207678	43	2.8	41	72	10	112	30	23	16	29	1.96
51230152--51230272	43	2.9	42	76	11	120	29	25	15	28	1.96
51234403--51234587	40	4.7	40	76	6	180	25	22	26	25	2.00
51242253--51242303	23	2.2	23	100	0	102	50	7	23	17	1.72
51245131--51245313	40	4.6	40	93	0	303	21	28	22	26	1.99
51249194--51249270	28	2.7	29	84	4	86	38	31	12	16	1.87
51249570--51249675	56	1.9	56	90	1	169	25	25	16	33	1.96
51251818--51251859	12	3.4	13	81	18	54	28	0	0	71	0.86
51256967--51257052	42	2.0	42	95	0	154	24	30	10	34	1.89
51260979--51261039	27	2.3	27	82	0	68	36	18	16	29	1.92
51261048--51261115	27	2.5	27	85	0	91	20	16	23	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51261483--51261554	32	2.2	32	85	0	90	31	15	23	29	1.95
51271534--51271774	40	6.0	40	93	0	365	19	22	31	26	1.98
51271845--51271910	33	2.0	33	100	0	132	45	12	18	24	1.83
51271971--51272025	25	2.2	25	80	6	67	30	10	30	27	1.91
51272009--51272107	28	3.5	28	76	5	119	21	20	29	29	1.98
51272007--51272134	56	2.3	56	94	0	238	20	19	32	28	1.97
51272037--51272134	28	3.5	28	73	15	103	19	19	33	27	1.96
51277796--51277867	25	2.9	25	89	0	108	27	20	23	27	1.99
51277913--51277963	21	2.4	21	83	0	66	33	19	11	35	1.88
51278000--51278047	25	2.0	24	83	4	60	27	18	22	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325