genome.fa.s5.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  157  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49731675--49731789	30	3.8	30	95	0	194	44	6	22	26	1.78
49736375--49736482	15	7.2	15	69	12	87	43	7	23	25	1.79
49736368--49736482	30	3.8	30	97	0	203	44	6	23	25	1.78
49737204--49737235	10	3.0	11	90	9	57	90	0	9	0	0.45
49737370--49737404	7	5.3	7	90	10	56	88	0	11	0	0.51
49737373--49737404	13	2.3	15	84	15	50	87	0	12	0	0.54
49741572--49741747	46	3.8	46	78	14	200	21	20	28	29	1.98
49741569--49741740	93	1.8	93	93	2	301	21	20	29	28	1.98
49743520--49743674	39	4.0	39	88	2	231	24	27	23	23	2.00
49746130--49746179	20	2.5	20	83	6	57	34	24	18	24	1.96
49747358--49747414	16	3.8	14	76	15	51	68	1	1	28	1.09
49747555--49747587	16	2.1	16	94	0	57	60	6	0	33	1.21
49749137--49749193	29	2.0	29	92	0	96	35	19	14	31	1.91
49752691--49752736	18	2.6	18	93	6	76	23	17	4	54	1.61
49753104--49753151	21	2.3	21	85	0	60	45	14	2	37	1.57
49754801--49754881	40	2.0	40	95	0	144	30	18	6	44	1.74
49775122--49775159	20	1.9	20	88	0	58	44	31	10	13	1.77
49779632--49779786	42	3.7	42	85	3	195	29	13	24	32	1.93
49779632--49779786	85	1.8	84	83	6	206	29	13	24	32	1.93
49784120--49784178	26	2.3	26	96	0	109	40	0	27	32	1.56
49786356--49786519	42	3.9	42	81	1	175	27	14	26	32	1.94
49786408--49786519	43	2.6	42	81	5	136	28	16	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49802497--49802777	144	2.0	144	88	2	422	30	19	18	32	1.96
49812232--49812299	30	2.3	30	94	0	118	33	23	2	39	1.70
49819682--49819776	43	2.2	43	86	0	127	21	22	31	25	1.98
49821039--49821113	29	2.6	29	86	0	96	26	29	17	26	1.97
49822968--49823379	46	9.0	46	93	0	673	22	23	15	38	1.92
49825795--49825862	30	2.3	30	84	5	84	27	19	5	47	1.72
49858652--49858686	10	3.6	10	92	7	63	42	20	0	37	1.52
49859725--49859812	29	3.1	29	83	1	115	29	29	14	26	1.95
49860031--49860073	16	2.7	16	92	0	68	9	20	18	51	1.74
49863376--49863428	27	2.0	27	100	0	106	33	20	18	26	1.96
49870095--49870153	27	2.2	27	96	0	109	20	23	18	37	1.94
49879694--49879835	40	3.6	40	90	2	207	27	25	22	24	2.00
49883147--49883236	40	2.3	39	80	5	92	37	32	11	18	1.86
49889683--49889724	18	2.4	17	84	11	50	19	2	26	52	1.58
49898186--49898311	44	3.0	41	82	8	144	27	26	18	26	1.98
49900251--49900486	40	5.9	40	89	0	355	26	22	26	24	2.00
49908232--49908387	40	3.9	40	91	0	249	26	23	26	23	2.00
49932293--49932388	47	2.0	47	91	0	156	30	14	12	42	1.83
49933670--49933738	31	2.2	31	92	0	111	28	26	15	28	1.96
49933762--49933853	42	2.2	42	98	0	175	32	20	15	31	1.94
49933988--49934069	25	3.3	24	80	8	67	26	24	21	26	2.00
49934001--49934070	25	2.8	26	80	6	90	27	25	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49937226--49937429	45	4.6	44	85	4	268	24	20	27	28	1.99
49946821--49946970	67	2.2	67	81	8	171	32	17	28	21	1.96
49946845--49947028	67	2.8	64	77	8	194	29	17	29	22	1.97
49950625--49950820	27	7.3	27	85	2	241	37	19	18	24	1.94
49950621--49950820	81	2.5	81	88	0	283	37	19	19	24	1.94
49951472--49951523	27	2.0	26	84	3	68	17	21	23	38	1.93
49952600--49952651	21	2.8	17	76	20	59	19	11	5	63	1.47
49954026--49954142	46	2.6	44	78	13	121	29	19	26	23	1.98
49955009--49955038	6	5.0	6	100	0	60	16	0	0	83	0.65
49958369--49958400	11	2.9	11	100	0	64	28	0	0	71	0.86
49959978--49960015	16	2.4	16	100	0	76	23	0	18	57	1.40
49962923--49962960	20	1.9	20	88	0	58	60	0	0	39	0.97
49963349--49963390	18	2.3	18	80	8	50	33	2	4	59	1.31
49963437--49963572	18	7.6	18	69	14	93	33	2	1	63	1.16
49963445--49963519	39	1.9	39	86	0	105	36	1	1	61	1.13
49963402--49963502	29	3.6	28	72	6	80	31	3	1	62	1.25
49963437--49963571	9	15.0	9	64	17	50	33	2	1	62	1.16
49964858--49964903	20	2.3	20	88	7	67	50	0	2	47	1.13
49964899--49964965	20	3.3	20	78	15	68	35	0	8	55	1.32
49967714--49967752	18	2.1	19	85	4	53	38	0	0	61	0.96
49967714--49967752	19	2.1	19	85	4	53	38	0	0	61	0.96
49971535--49971814	50	5.5	50	80	4	294	24	16	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49971583--49971814	101	2.3	99	85	5	297	25	18	26	30	1.98
49971536--49971821	151	1.9	152	89	1	448	23	17	26	32	1.96
49974745--49974775	11	2.8	11	100	0	62	19	38	25	16	1.92
49982943--49982971	15	2.0	15	93	6	51	55	20	13	10	1.68
49983642--49983690	15	3.3	15	76	0	53	59	16	8	16	1.60
49986580--49986759	96	1.9	96	85	2	254	22	28	20	28	1.98
49986580--49986767	48	3.9	48	82	1	225	22	27	20	29	1.98
49986744--49986792	25	2.0	25	91	0	80	22	20	16	40	1.91
49997704--49997788	32	2.4	37	73	20	99	25	12	25	35	1.92
49997718--49997839	32	3.8	32	84	0	163	27	15	25	31	1.96
50005730--50006170	47	9.4	47	94	0	758	31	8	30	29	1.87
50006289--50006367	37	2.1	37	88	4	115	25	18	30	25	1.98
50008225--50008327	43	2.4	43	100	0	206	22	15	35	26	1.94
50008309--50008382	29	2.6	29	89	4	105	25	16	32	25	1.96
50008693--50008808	40	2.9	40	90	0	178	25	23	26	24	2.00
50011539--50012022	47	10.3	46	93	0	734	31	9	29	30	1.88
50011539--50012022	141	3.4	141	94	0	828	31	9	29	30	1.88
50012141--50012219	37	2.1	37	88	4	115	26	18	27	26	1.98
50014259--50014446	40	4.7	40	88	3	272	26	27	20	25	1.99
50014236--50014446	80	2.7	80	90	4	322	27	26	20	26	1.99
50030278--50030505	40	5.7	40	90	3	352	26	27	21	25	1.99
50035304--50035446	43	3.3	43	84	0	178	34	32	20	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50035435--50035555	40	3.0	40	91	0	161	28	31	21	18	1.97
50038131--50038161	9	3.4	9	95	0	53	58	12	25	3	1.50
50038549--50038627	37	2.1	37	90	0	122	25	31	18	24	1.98
50038745--50039294	47	11.7	47	96	1	1014	30	29	8	32	1.87
50050716--50050794	31	2.5	31	93	4	133	26	25	17	30	1.97
50051000--50051187	26	7.3	26	87	2	258	27	23	20	27	1.99
50051000--50051187	52	3.7	52	92	3	312	27	23	20	27	1.99
50051990--50052077	27	3.3	27	87	3	115	20	23	18	37	1.94
50052108--50052506	27	14.7	27	78	4	178	33	8	20	38	1.83
50052191--50052377	81	2.3	80	87	8	272	30	7	20	41	1.80
50052221--50052386	54	3.1	54	85	3	210	30	6	21	42	1.77
50052231--50052413	80	2.3	81	82	4	192	33	6	20	39	1.78
50052221--50052506	54	5.3	54	77	3	209	33	7	20	38	1.80
50053538--50053592	27	2.0	27	100	0	110	32	16	14	36	1.89
50065305--50065392	27	3.3	27	77	6	88	39	21	12	26	1.89
50068963--50069013	24	2.1	24	92	0	84	13	15	31	39	1.87
50073928--50074062	40	3.4	40	91	3	220	25	29	21	23	1.99
50079054--50079542	47	10.4	47	93	0	807	32	8	29	29	1.87
50079665--50079739	37	2.0	37	87	5	107	22	20	30	26	1.98
50086751--50086885	40	3.4	40	93	3	229	24	30	22	22	1.99
50091071--50091220	67	2.2	67	81	8	171	32	17	28	21	1.96
50091095--50091278	67	2.8	64	77	8	194	29	17	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50094712--50094895	67	2.8	64	76	8	185	29	16	29	23	1.96
50103201--50103272	25	3.0	23	80	10	72	23	23	23	29	1.99
50103306--50103370	11	6.1	11	76	7	62	32	16	13	36	1.89
50103320--50103368	21	2.3	20	83	10	71	32	20	10	36	1.86
50103720--50103776	20	2.8	20	94	2	96	22	36	21	19	1.95
50106627--50106653	13	2.1	13	100	0	54	51	14	0	33	1.43
50109577--50109639	6	10.5	6	81	6	74	77	0	6	15	0.96
50113893--50113983	25	3.7	24	89	2	137	47	15	19	17	1.83
50113872--50113982	49	2.3	49	85	3	143	48	15	18	17	1.81
50113893--50113958	6	10.8	6	78	15	73	48	13	19	18	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325