genome.fa.s5.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  156  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49434678--49434729	9	5.9	9	72	4	52	50	0	5	44	1.26
49434673--49434710	17	2.2	17	95	0	67	50	0	7	42	1.31
49436069--49436122	27	2.0	27	92	0	90	44	11	12	31	1.78
49439363--49439420	28	2.1	28	90	6	91	17	0	24	58	1.38
49452690--49453775	545	2.0	541	93	1	1841	31	17	21	30	1.96
49463076--49463114	17	2.3	17	81	0	51	38	2	2	56	1.27
49463129--49463181	20	2.8	19	81	18	67	43	0	1	54	1.11
49463087--49463285	68	3.0	66	73	14	203	40	2	5	51	1.37
49463157--49463273	62	1.9	59	87	5	171	40	3	5	51	1.41
49471455--49471564	54	2.0	54	94	0	193	30	15	25	29	1.96
49473468--49473785	153	2.1	153	92	1	530	20	22	32	24	1.98
49474431--49474471	14	2.7	16	77	14	50	46	0	7	46	1.30
49476320--49476518	68	3.0	66	75	18	198	41	3	4	50	1.40
49476390--49476506	62	1.9	62	87	5	177	41	3	4	50	1.38
49477565--49477728	82	2.0	82	95	0	292	36	9	17	37	1.81
49482212--49482296	20	4.2	20	78	10	84	69	1	2	27	1.08
49482243--49482296	19	2.7	19	85	8	63	75	1	1	20	0.98
49482308--49482347	10	4.2	10	78	21	50	60	0	2	37	1.11
49482307--49482344	18	2.1	19	85	14	53	57	0	2	39	1.12
49482604--49482687	19	4.4	19	79	11	100	28	1	3	66	1.15
49482616--49482687	10	7.4	10	78	12	78	29	0	2	68	1.04
49482616--49482696	10	8.1	11	76	12	52	28	1	2	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49482615--49482744	58	2.2	59	82	8	160	34	0	1	63	1.10
49482616--49482755	9	14.7	9	70	13	84	34	1	1	62	1.13
49482615--49482756	28	4.9	28	74	14	119	34	1	1	62	1.13
49482900--49483061	89	1.8	87	86	5	236	33	9	17	38	1.82
49483784--49484316	268	2.0	268	93	0	904	30	13	22	33	1.92
49484647--49484675	14	2.0	15	93	6	51	27	0	20	51	1.47
49489641--49489708	33	2.1	33	91	0	109	20	13	30	35	1.91
49493351--49493547	35	5.6	35	88	1	279	31	25	12	29	1.93
49505979--49506023	23	2.0	23	82	8	56	64	11	13	11	1.50
49511488--49511525	20	1.9	20	88	0	58	23	18	26	31	1.97
49518189--49518303	52	2.2	52	92	1	194	53	6	20	20	1.68
49522568--49523256	343	2.0	343	98	0	1342	38	16	17	27	1.92
49523551--49523593	21	2.0	21	86	8	61	27	25	18	27	1.98
49530508--49530549	18	2.5	18	81	11	54	33	0	4	61	1.17
49534198--49534275	30	2.7	29	79	16	83	52	2	2	42	1.28
49534251--49534319	21	3.4	21	76	11	72	59	1	5	33	1.30
49534384--49534426	19	2.2	20	87	4	61	65	4	0	30	1.13
49534405--49534473	29	2.4	27	77	15	68	62	2	2	31	1.25
49535934--49535980	16	2.9	17	75	12	53	38	21	4	36	1.73
49537355--49537421	5	14.0	5	87	9	104	59	1	0	38	1.06
49539042--49539076	17	2.1	17	100	0	70	34	11	25	28	1.91
49540686--49540717	13	2.5	13	100	0	64	25	34	28	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49541519--49541746	47	4.8	50	74	13	187	25	31	17	25	1.97
49543597--49543692	25	3.8	25	79	5	104	26	22	22	28	1.99
49543597--49543692	51	1.9	50	85	6	131	26	22	22	28	1.99
49543596--49543719	25	5.0	24	74	13	67	27	22	22	27	1.99
49543912--49543995	31	2.8	31	92	3	136	33	16	25	25	1.96
49551109--49551286	46	3.8	46	77	4	196	22	20	28	28	1.99
49551107--49551278	93	1.8	93	89	0	272	22	20	29	27	1.98
49554489--49554584	25	3.8	25	84	2	129	25	26	23	25	2.00
49554774--49554857	31	2.7	31	90	1	134	33	16	25	25	1.96
49555636--49555695	30	2.0	30	100	0	120	36	26	3	33	1.73
49561161--49561209	26	1.9	26	87	4	73	22	8	6	63	1.44
49561161--49561216	26	2.2	25	83	6	67	25	8	5	60	1.47
49561445--49561490	24	2.0	23	82	4	56	26	4	4	65	1.30
49576627--49576663	19	1.9	19	94	0	65	35	0	18	45	1.50
49576875--49577214	41	8.3	41	90	0	527	29	20	28	22	1.98
49576875--49577208	82	4.1	82	100	0	668	29	20	28	22	1.98
49577460--49577669	102	2.1	103	98	1	406	41	9	16	31	1.81
49583624--49583660	19	1.9	19	94	0	65	35	0	18	45	1.50
49583872--49584211	41	8.3	41	90	0	527	29	20	28	22	1.98
49583872--49584205	82	4.1	82	100	0	668	29	20	28	22	1.98
49584457--49584667	103	2.1	103	99	0	415	42	9	16	31	1.80
49598511--49598669	55	2.9	54	79	5	178	20	25	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49598482--49598777	54	5.6	54	74	9	225	22	24	17	35	1.95
49598655--49598824	47	3.5	47	72	10	169	27	23	14	35	1.93
49598600--49598826	101	2.2	101	93	0	382	25	22	15	36	1.94
49602120--49602206	44	2.0	44	86	4	122	24	26	13	35	1.93
49604874--49605046	46	3.7	46	77	10	190	22	20	27	30	1.98
49604871--49605041	93	1.8	93	91	0	279	22	20	28	29	1.98
49605271--49605308	19	2.0	20	85	15	53	36	0	23	39	1.55
49610409--49610648	40	5.8	40	82	10	286	27	25	22	24	1.99
49610464--49610632	88	1.9	88	96	0	311	28	26	21	23	1.99
49614996--49615304	54	5.9	54	76	10	280	23	24	16	35	1.94
49615182--49615404	47	4.6	47	76	9	205	27	22	13	36	1.91
49615019--49615357	101	3.3	101	86	4	421	24	23	15	35	1.94
49619810--49619878	30	2.3	30	74	0	75	17	34	28	18	1.94
49628611--49628921	46	6.7	46	79	9	260	22	29	20	27	1.99
49628611--49628923	139	2.2	139	80	11	338	22	29	20	27	1.99
49633365--49640284	48	143.8	48	85	4	8390	35	6	25	31	1.82
49636642--49636713	35	2.1	35	94	0	126	38	0	23	37	1.55
49636594--49636761	83	2.0	83	97	0	318	36	4	25	33	1.75
49640329--49640473	37	3.9	37	90	0	227	24	17	32	25	1.97
49641254--49641525	40	6.8	40	95	0	438	27	21	25	25	1.99
49645223--49645942	48	15.0	48	93	0	1206	35	6	26	31	1.81
49645987--49646131	37	3.9	37	94	0	245	23	18	33	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49653372--49653433	20	3.0	20	86	6	72	50	1	25	22	1.59
49656006--49656083	24	3.3	24	75	15	74	26	26	12	33	1.93
49662916--49662953	18	2.1	18	100	0	76	23	21	18	36	1.95
49666085--49666490	46	8.6	45	75	10	228	23	29	19	28	1.98
49666088--49666492	140	2.9	136	80	9	374	23	28	19	28	1.98
49667346--49667380	8	4.4	8	96	0	61	8	17	0	74	1.06
49672973--49673001	14	2.0	15	93	6	51	27	0	20	51	1.47
49674082--49674303	45	4.9	45	82	0	264	23	14	26	35	1.94
49674094--49674303	90	2.3	90	86	0	294	24	15	26	33	1.95
49674275--49674386	43	2.7	41	75	8	109	27	17	25	28	1.98
49674714--49674762	24	2.0	24	92	0	80	32	0	16	51	1.45
49677233--49677504	48	5.7	49	74	12	183	27	19	29	23	1.98
49677374--49677548	49	3.6	47	81	11	169	25	17	30	26	1.97
49684847--49684929	27	3.1	27	85	0	103	25	18	19	37	1.94
49686586--49686807	46	4.8	46	83	7	288	29	29	19	21	1.98
49697838--49698003	42	3.9	42	80	3	172	30	23	14	31	1.94
49703178--49703286	50	2.2	48	87	8	157	29	22	20	28	1.98
49703179--49703286	25	4.4	25	84	5	123	29	22	20	27	1.98
49711029--49711092	31	2.1	31	93	0	110	23	23	15	37	1.93
49711301--49711378	25	3.2	25	87	8	108	35	21	17	24	1.95
49711456--49711502	20	2.3	20	100	0	94	34	19	10	36	1.86
49713916--49713956	19	2.2	19	86	0	55	46	12	0	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49715533--49715559	13	2.1	13	100	0	54	44	7	7	40	1.60
49722453--49722529	31	2.5	31	86	0	109	20	14	12	51	1.75
49723736--49723783	23	2.0	25	88	8	73	39	0	0	60	0.97
49728357--49728498	31	4.6	31	75	9	114	30	12	13	42	1.81
49730301--49730354	27	2.0	27	100	0	108	37	14	7	40	1.74
49730567--49730595	13	2.1	14	93	6	51	34	0	0	65	0.93
49731166--49731221	27	2.0	29	86	13	82	32	5	10	51	1.59
49731391--49731425	17	2.1	16	89	5	52	54	0	0	45	0.99
49731410--49731500	37	2.4	36	84	12	112	47	2	1	49	1.21
49731682--49731789	15	7.2	15	67	12	78	43	7	22	26	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325