genome.fa.s5.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  177  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55699814--55699860	19	2.3	20	82	10	60	48	14	0	36	1.44
55701953--55701998	15	3.1	14	81	9	56	52	10	19	17	1.74
55701940--55701998	30	2.0	30	83	6	75	52	10	20	16	1.72
55705830--55706007	27	6.6	27	84	3	205	29	28	15	26	1.96
55705851--55706006	82	1.9	81	88	3	233	29	28	15	26	1.96
55713853--55714030	27	6.6	27	84	3	205	29	28	15	26	1.96
55713874--55714029	82	1.9	81	88	3	233	29	28	15	26	1.96
55717161--55717441	50	5.6	50	88	0	391	29	27	16	26	1.97
55717161--55717490	100	3.4	100	87	4	441	30	26	16	26	1.97
55717172--55717441	150	1.8	150	95	0	486	30	27	15	26	1.96
55717840--55717886	19	2.3	20	82	10	60	48	14	0	36	1.44
55721079--55721136	21	2.6	22	83	8	82	32	0	8	58	1.28
55722256--55722300	23	2.0	23	100	0	90	37	35	8	17	1.81
55730650--55730761	27	4.2	26	83	7	134	36	22	24	16	1.94
55730650--55730761	54	2.1	54	86	6	156	36	22	24	16	1.94
55733124--55733220	46	2.1	45	86	1	131	48	19	12	19	1.80
55733200--55733289	45	2.0	45	81	8	105	42	17	17	22	1.89
55733212--55733381	45	3.8	45	85	4	218	37	18	20	24	1.94
55733167--55733411	90	2.7	90	76	5	262	41	18	18	21	1.91
55733347--55733512	45	3.7	46	85	1	201	44	18	19	16	1.87
55733384--55733504	46	2.7	46	89	1	181	46	17	20	15	1.84
55736830--55736900	34	2.1	34	97	0	133	40	18	8	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55738997--55739069	15	4.8	15	73	8	58	53	19	15	12	1.72
55743967--55744009	18	2.3	18	81	14	52	39	13	2	44	1.57
55750524--55750600	13	6.1	12	78	11	73	3	10	6	79	1.04
55750524--55750608	39	2.2	39	93	0	143	3	11	5	78	1.04
55750524--55750600	6	12.2	6	82	10	73	3	10	6	79	1.04
55760694--55761784	132	8.3	131	81	3	1181	30	19	16	32	1.95
55760651--55761788	176	6.4	176	82	4	1218	30	19	16	32	1.95
55760599--55761788	44	26.9	44	79	4	1054	30	20	16	32	1.95
55763845--55763899	24	2.3	23	79	14	58	30	32	16	20	1.94
55779691--55779844	42	3.6	42	81	6	159	29	22	15	33	1.95
55783932--55783982	19	2.7	20	85	11	63	45	1	21	31	1.63
55791023--55791053	16	2.0	15	93	6	53	19	6	12	61	1.53
55793869--55794006	40	3.5	40	92	3	217	23	28	23	23	1.99
55801014--55801146	40	3.3	40	90	3	198	24	27	22	25	2.00
55809009--55809034	13	2.0	13	100	0	52	46	7	0	46	1.31
55809705--55809886	70	2.4	72	78	12	179	37	19	1	41	1.61
55810180--55810204	11	2.3	11	100	0	50	28	20	0	52	1.47
55811105--55811152	5	9.6	5	77	8	53	54	2	0	43	1.12
55811107--55811154	16	3.1	16	82	11	64	52	2	0	45	1.12
55821686--55821720	5	6.8	5	87	6	52	17	2	0	80	0.84
55826148--55826238	46	2.0	46	84	0	119	28	31	5	34	1.80
55826232--55826543	47	6.6	47	91	0	453	26	28	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55826255--55826330	22	3.3	22	66	28	59	23	27	13	35	1.92
55826396--55826471	22	3.3	22	66	16	64	26	28	11	32	1.92
55830228--55830277	26	1.9	26	95	0	91	14	24	32	30	1.94
55830046--55830310	104	2.6	104	89	3	410	20	20	29	29	1.97
55836443--55836471	14	2.0	15	93	6	51	34	13	13	37	1.85
55837613--55837662	26	1.9	26	95	0	91	12	24	34	30	1.91
55837715--55837764	26	1.9	26	95	0	91	14	24	32	30	1.94
55837534--55837797	102	2.6	103	90	3	415	20	20	29	29	1.97
55840271--55840368	28	3.5	27	72	15	74	33	28	17	20	1.95
55840400--55840688	40	7.2	40	91	0	461	28	26	19	25	1.98
55842127--55842216	46	2.0	46	86	0	126	28	28	5	36	1.80
55842210--55842521	47	6.6	47	91	0	453	26	28	11	33	1.91
55842233--55842308	22	3.3	22	66	28	59	23	27	13	35	1.92
55842374--55842449	22	3.3	22	66	16	64	26	28	11	32	1.92
55866249--55866297	24	2.0	24	96	0	89	28	20	18	32	1.96
55866392--55866425	18	1.9	18	88	5	52	23	8	17	50	1.74
55867364--55867459	40	2.5	38	80	9	113	39	35	10	14	1.80
55867382--55867457	40	1.9	40	88	0	116	39	34	11	14	1.83
55872863--55872949	27	3.2	28	91	6	144	32	24	24	19	1.98
55874533--55874640	26	4.2	26	92	0	171	36	22	7	34	1.82
55880900--55881007	26	4.2	26	91	0	171	37	23	6	33	1.80
55885093--55885204	27	4.2	26	84	7	134	36	22	23	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55885093--55885204	54	2.1	54	86	3	154	36	22	23	17	1.95
55886613--55886665	24	2.2	24	96	0	97	20	43	3	32	1.70
55888168--55888219	27	2.0	26	84	3	68	34	21	26	17	1.95
55890417--55890490	29	2.6	29	86	4	96	25	31	16	27	1.96
55898557--55898630	29	2.6	29	86	4	96	25	31	16	27	1.96
55900332--55900617	27	10.6	27	80	1	313	25	19	18	36	1.94
55900332--55900605	81	3.4	80	86	2	350	25	18	18	37	1.93
55997249--55997427	79	2.2	80	82	7	213	24	27	22	24	2.00
55997224--55997427	40	5.1	40	81	8	220	25	27	22	25	2.00
56002391--56002541	28	5.4	28	90	3	207	27	11	27	33	1.92
56004573--56004693	44	2.9	41	75	17	113	28	24	19	28	1.98
56009119--56009150	15	2.1	15	94	0	55	37	15	21	25	1.93
56010966--56011100	45	3.1	43	86	10	186	40	23	16	19	1.90
56010910--56011096	42	4.4	42	83	11	213	38	25	18	18	1.93
56018141--56018260	46	2.6	46	93	0	204	20	25	28	25	1.99
56021493--56021681	42	4.5	42	78	8	161	40	24	17	17	1.90
56023290--56023398	54	2.0	54	89	0	164	37	20	19	22	1.94
56027002--56027069	20	3.3	20	78	12	66	57	7	0	35	1.27
56027034--56027081	24	2.0	24	88	8	71	54	2	0	43	1.12
56027051--56027096	18	2.6	17	83	12	58	63	2	0	34	1.07
56027638--56027769	59	2.2	59	82	5	158	25	14	16	43	1.86
56028915--56028980	19	3.4	19	83	8	80	54	7	1	36	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56034771--56034849	39	2.0	39	100	0	158	39	27	5	27	1.77
56036553--56036632	42	1.9	42	89	0	124	21	33	10	35	1.87
56049330--56049408	40	2.0	40	89	0	122	25	18	12	43	1.86
56057475--56057619	40	3.6	40	80	4	157	24	25	23	26	2.00
56060657--56060824	40	4.2	40	83	4	106	25	27	23	23	2.00
56060680--56060824	40	3.6	40	85	4	193	23	26	24	25	2.00
56066995--56067125	46	2.8	48	77	14	157	22	19	27	29	1.98
56071068--56071092	13	1.9	13	100	0	50	8	32	36	24	1.84
56076586--56076654	36	1.9	36	90	0	111	37	28	17	15	1.91
56078594--56078653	30	2.0	30	100	0	120	53	13	6	26	1.64
56079472--56079504	14	2.4	14	94	0	57	45	6	18	30	1.73
56083098--56083346	27	9.2	27	84	3	234	26	18	19	36	1.94
56083126--56083341	81	2.7	81	84	1	272	25	18	18	37	1.94
56086212--56086426	27	8.0	27	83	1	261	24	20	20	35	1.96
56087784--56087871	46	1.9	46	80	0	104	23	14	17	44	1.86
56094726--56094765	17	2.4	17	95	0	71	20	27	37	15	1.92
56102013--56102166	38	4.0	38	88	3	220	22	22	25	29	1.99
56116282--56116322	18	2.4	17	87	4	55	70	0	26	2	0.99
56121032--56121218	50	3.8	49	80	7	189	26	17	27	28	1.98
56129688--56129749	31	2.0	31	100	0	124	45	12	19	22	1.84
56131813--56131925	43	2.7	42	70	16	99	26	20	25	27	1.99
56135512--56135745	48	4.9	48	91	2	344	36	6	27	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56135503--56135755	95	2.6	96	87	1	346	35	5	27	30	1.81
56135886--56135988	37	2.8	37	89	0	143	23	18	32	26	1.97
56140366--56140426	31	2.0	31	90	0	95	24	27	16	31	1.96
56140620--56140742	25	5.0	24	92	4	176	27	22	20	29	1.98
56140620--56140742	49	2.5	49	87	7	178	27	22	20	29	1.98
56140854--56140901	25	1.9	25	86	0	69	25	16	25	33	1.96
56147694--56147772	29	2.7	29	86	5	106	27	32	15	24	1.95
56151675--56151772	28	3.5	28	92	1	162	27	12	27	32	1.92
56151675--56151785	28	4.0	27	88	3	89	29	11	25	33	1.91
56154972--56154999	7	4.0	7	100	0	56	28	14	0	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325