Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  123  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38314992--38315036
18
2.3
20
85
7
58
37
0
4
57
1.19
38315305--38315331
14
1.9
14
100
0
54
55
0
14
29
1.40
38321593--38321710
61
1.9
61
98
0
227
40
16
10
32
1.82
38329933--38329977
19
2.5
19
85
7
58
64
11
11
13
1.50
38332806--38332834
14
2.0
15
93
6
51
31
0
0
68
0.89
38339737--38339945
40
5.6
39
77
13
199
25
25
22
26
2.00
38339763--38339945
73
2.5
74
79
10
178
26
24
21
27
1.99
38347666--38347888
40
5.7
40
85
7
287
25
27
22
24
2.00
38347666--38347888
79
2.8
80
84
8
287
25
27
22
24
2.00
38349490--38349548
25
2.2
25
82
8
64
44
1
0
54
1.10
38349631--38349667
17
2.2
17
90
0
56
40
0
0
59
0.97
38350933--38351052
52
2.2
55
88
5
174
28
3
4
64
1.28
38351978--38352009
7
4.6
7
100
0
64
28
0
12
59
1.34
38353060--38353119
27
2.2
26
85
5
75
41
0
1
56
1.09
38353079--38353143
33
2.0
31
82
14
78
36
1
3
58
1.23
38356621--38356675
24
2.3
24
96
0
101
34
27
10
27
1.90
38356749--38356783
17
2.0
18
88
5
54
42
14
5
37
1.69
38356905--38356934
14
2.1
14
100
0
60
33
6
13
46
1.69
38358847--38358894
25
2.0
24
84
12
62
41
12
16
29
1.85
38359147--38359175
15
1.9
15
100
0
58
6
27
0
65
1.18
38361588--38361642
24
2.3
24
93
0
92
36
27
9
27
1.87
38362944--38363318
126
3.0
126
86
0
518
31
14
15
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38363378--38363457
30
2.7
30
84
3
101
41
22
1
35
1.62
38363405--38363571
22
7.4
22
63
19
76
41
17
1
39
1.58
38363404--38363633
64
3.5
63
68
18
178
41
17
1
39
1.58
38363378--38363658
136
2.1
136
93
1
483
41
17
1
39
1.57
38363542--38363705
86
1.9
86
93
0
283
43
17
0
37
1.54
38363638--38363704
34
2.0
34
85
5
91
43
17
0
38
1.50
38364430--38364481
19
2.7
19
85
11
70
30
7
1
59
1.36
38369825--38370024
93
2.2
88
80
12
210
44
15
5
35
1.69
38369996--38370024
14
2.0
15
93
6
51
58
13
0
27
1.36
38374065--38374093
10
2.9
10
100
0
58
41
0
58
0
0.98
38377499--38377564
20
3.3
20
73
12
64
42
1
6
50
1.36
38383142--38383850
354
2.0
355
92
0
1168
20
24
15
39
1.91
38386717--38386751
3
11.7
3
100
0
70
68
31
0
0
0.90
38387930--38387982
21
2.5
21
73
11
54
5
0
35
58
1.22
38389579--38389705
20
6.3
20
76
0
92
20
18
20
40
1.92
38389628--38389763
40
3.4
39
78
7
139
19
17
22
40
1.91
38389596--38389712
20
5.8
20
80
0
99
18
19
22
39
1.93
38392367--38392401
10
3.4
10
92
4
52
74
0
5
20
1.02
38393618--38393670
26
2.0
26
96
0
97
33
9
11
45
1.72
38397715--38397755
21
2.0
21
95
0
73
19
26
21
31
1.97
38400551--38400581
16
1.9
16
93
0
53
29
16
12
41
1.85
38403642--38403707
31
2.1
31
88
0
96
45
13
9
31
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38403799--38403836
8
4.6
8
90
9
51
23
0
2
73
0.95
38403814--38403855
21
2.0
20
90
4
66
26
2
2
69
1.13
38412008--38412064
16
3.6
16
95
0
96
33
7
35
24
1.82
38412044--38412133
45
2.0
44
87
6
128
32
5
27
34
1.80
38412278--38412319
15
2.7
16
82
14
52
52
2
0
45
1.13
38412287--38412328
15
2.9
15
82
10
52
52
0
0
47
1.00
38412418--38412452
18
2.0
17
88
5
52
54
0
0
45
0.99
38412326--38412512
60
3.1
60
66
13
159
48
7
3
40
1.47
38412276--38412572
119
2.5
121
93
2
501
49
5
2
42
1.38
38412374--38412561
59
3.2
58
69
10
173
50
4
3
42
1.38
38417780--38418020
46
5.1
46
76
12
204
22
28
19
29
1.98
38423242--38423280
19
2.1
19
100
0
78
33
15
5
46
1.68
38424329--38424612
46
6.1
46
79
11
249
23
30
19
26
1.98
38424328--38424598
94
2.9
91
78
12
284
23
30
18
26
1.98
38437817--38437857
21
1.9
21
85
5
55
19
21
19
39
1.93
38442142--38442312
93
1.8
93
94
0
306
28
28
21
22
1.99
38442137--38442309
46
3.7
46
77
13
201
28
27
21
22
1.99
38454693--38454808
23
4.9
23
78
9
101
24
19
19
36
1.95
38455756--38455819
30
2.1
30
85
5
85
18
31
29
20
1.96
38458460--38458508
24
2.0
24
100
0
98
44
20
4
30
1.70
38463179--38463587
55
7.7
53
74
10
309
23
24
16
35
1.95
38463191--38463587
109
3.7
108
79
7
488
22
24
16
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38463203--38463649
209
2.1
209
92
0
750
23
24
15
36
1.94
38463191--38463596
54
7.6
54
75
10
354
22
24
16
35
1.94
38465315--38465354
20
2.0
21
85
5
55
12
22
17
47
1.81
38465294--38465389
21
4.7
21
74
12
76
15
19
17
46
1.84
38473298--38473351
20
2.7
20
94
2
90
14
16
18
50
1.79
38475088--38475138
17
2.8
20
75
22
58
31
0
1
66
1.03
38475125--38475197
25
2.8
26
76
12
71
34
6
2
56
1.40
38476973--38477007
3
11.7
3
100
0
70
31
34
0
34
1.58
38477546--38477609
26
2.7
23
75
15
67
43
4
0
51
1.22
38478428--38478477
16
3.1
16
71
23
50
50
0
0
50
1.00
38483291--38483351
20
3.0
20
95
0
113
40
19
4
34
1.73
38484179--38484340
43
3.8
42
82
8
184
31
25
19
23
1.98
38491603--38491647
13
3.3
14
77
22
51
60
0
4
35
1.17
38491698--38491740
20
2.4
19
82
17
56
72
0
27
0
0.85
38493468--38493514
20
2.3
20
92
0
76
21
42
27
8
1.81
38496799--38496875
38
2.0
37
90
9
120
23
12
23
40
1.89
38502739--38502784
20
2.3
21
82
14
62
26
17
28
28
1.98
38502777--38502911
60
2.2
60
84
6
166
28
19
25
26
1.98
38503587--38503625
16
2.4
16
91
0
60
46
17
12
23
1.83
38510807--38510936
47
2.8
47
84
0
170
33
26
15
24
1.95
38516844--38516872
13
2.2
13
100
0
58
31
0
13
55
1.39
38522299--38522476
27
6.6
27
83
3
205
26
15
28
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38522300--38522455
82
1.9
81
88
3
233
26
15
28
29
1.96
38522296--38522476
82
2.2
81
83
2
229
27
15
27
29
1.96
38525563--38525601
6
6.5
6
100
0
78
15
0
0
84
0.62
38525568--38525607
18
2.2
18
90
0
62
20
2
0
77
0.88
38528545--38528573
13
2.2
13
100
0
58
31
0
13
55
1.39
38532184--38532325
67
2.1
67
84
5
176
32
21
26
19
1.97
38537337--38537461
62
2.0
62
100
0
250
24
14
24
37
1.92
38538945--38538996
24
2.2
24
89
0
77
50
9
3
36
1.54
38543409--38543589
49
3.7
49
87
1
272
30
28
16
24
1.97
38543409--38543590
99
1.8
99
95
0
328
30
28
16
25
1.97
38543815--38543876
29
2.1
30
84
3
81
38
14
8
38
1.76
38546604--38546667
24
2.7
24
83
9
69
48
12
1
37
1.51
38548100--38548138
13
3.0
13
76
0
51
38
0
0
61
0.96
38549411--38549453
22
2.0
22
85
0
59
55
9
13
20
1.66
38551155--38551198
21
2.2
20
83
4
52
18
9
34
38
1.82
38552294--38552328
11
3.2
11
87
0
52
17
11
14
57
1.66
38554480--38554507
12
2.3
12
100
0
56
32
14
7
46
1.71
38570856--38570905
26
1.9
26
91
0
82
36
18
20
26
1.95
38607360--38607422
31
2.0
31
81
6
74
63
3
12
20
1.42
38613755--38613785
6
5.3
6
92
7
55
12
0
0
87
0.55
38615724--38615762
16
2.5
15
84
8
51
43
0
2
53
1.14
38623286--38623369
33
2.4
36
86
7
111
34
25
11
28
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38623597--38623752
41
3.8
41
89
6
235
28
22
20
28
1.98
38630907--38631004
33
2.9
33
84
7
108
36
22
10
30
1.87
38631219--38631374
41
3.8
41
89
6
235
28
22
20
28
1.98
38631861--38631908
24
2.1
23
85
11
64
31
14
0
54
1.41
38636000--38636067
35
1.9
35
100
0
136
42
19
14
23
1.88
38640227--38640275
25
2.0
25
84
8
64
57
2
2
38
1.22
38640338--38640395
8
7.1
8
74
21
50
37
0
0
62
0.96
38640338--38640377
17
2.3
18
87
12
57
37
0
0
62
0.95
38640344--38640395
24
2.2
24
85
0
68
36
0
0
63
0.95
38640838--38640885
15
3.3
15
80
11
55
72
2
0
25
0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325