genome.fa.s5.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  147  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46682862--46682896	9	3.7	10	92	7	56	82	0	5	11	0.82
46682862--46682901	9	4.2	9	87	9	53	82	0	5	12	0.82
46684561--46684604	23	1.9	23	90	0	70	22	9	20	47	1.78
46687714--46687937	40	5.6	40	85	7	278	24	21	28	25	1.99
46687713--46687970	119	2.2	119	81	6	292	25	21	27	25	1.99
46695780--46696022	40	6.1	40	85	7	300	24	22	27	25	2.00
46695780--46696022	79	3.1	79	84	6	289	24	22	27	25	2.00
46697665--46697831	43	3.9	43	80	10	182	25	16	29	29	1.96
46697861--46697922	28	2.2	28	88	0	88	29	37	12	20	1.90
46700279--46700304	11	2.4	11	100	0	52	53	19	0	26	1.45
46700776--46701222	27	16.7	28	75	7	272	30	11	19	38	1.87
46700776--46701222	54	8.4	54	76	7	326	30	11	19	38	1.87
46700778--46701199	134	3.2	131	80	7	456	30	11	19	38	1.87
46705480--46705760	141	2.0	141	90	2	449	33	11	29	25	1.91
46705480--46705720	47	5.1	47	96	0	446	34	11	28	26	1.91
46705744--46705920	96	1.8	96	93	0	309	35	10	32	22	1.87
46705744--46705920	46	3.8	46	89	5	273	35	10	32	22	1.87
46713729--46714020	41	7.2	40	86	5	282	36	22	21	19	1.95
46713729--46714020	82	3.6	78	83	7	314	36	22	21	19	1.95
46713740--46714020	123	2.3	122	85	3	350	35	23	21	19	1.96
46714602--46714653	22	2.4	22	80	3	70	26	1	25	46	1.63
46714712--46714753	15	2.7	16	92	7	77	45	38	0	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46715409--46715452	19	2.2	20	92	4	72	68	6	4	20	1.31
46715439--46715472	6	5.3	6	89	10	50	76	0	0	23	0.79
46715446--46715470	13	1.9	13	100	0	50	80	0	0	20	0.72
46715446--46715487	15	3.0	14	86	6	50	71	0	4	23	1.05
46715694--46715730	6	6.2	6	93	0	56	0	54	0	45	1.00
46718123--46718166	13	3.4	13	83	0	61	52	0	0	47	1.00
46718188--46718228	22	1.9	21	85	5	55	43	2	0	53	1.13
46719621--46719792	93	1.8	93	92	0	290	20	21	29	28	1.98
46719625--46719799	46	3.8	46	76	13	187	20	21	29	29	1.98
46724379--46724603	40	5.7	40	85	5	287	24	21	28	25	1.99
46724379--46724636	80	3.2	80	82	7	233	25	21	27	24	1.99
46724379--46724636	119	2.2	119	80	6	274	25	21	27	24	1.99
46732343--46732565	40	5.7	40	83	7	260	24	21	27	26	2.00
46732343--46732565	79	2.8	80	81	8	269	24	21	27	26	2.00
46732382--46732588	79	2.6	77	82	9	199	26	20	27	25	1.99
46738376--46738549	46	3.8	46	78	13	205	20	20	29	28	1.98
46742542--46742589	20	2.4	21	82	10	64	25	0	6	68	1.12
46742530--46742589	20	3.1	20	77	13	63	25	0	5	70	1.08
46770555--46770615	30	2.0	30	83	0	77	31	22	8	37	1.84
46772493--46772535	20	2.2	20	100	0	86	25	18	25	30	1.98
46772711--46772884	46	3.8	46	79	7	199	29	28	20	22	1.98
46772718--46772889	93	1.8	93	92	0	290	28	29	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46772761--46772904	46	3.1	44	70	21	107	29	28	19	22	1.98
46777206--46777283	15	5.1	16	73	14	67	56	15	16	11	1.67
46777196--46777284	30	3.0	30	79	11	94	57	15	15	11	1.65
46784157--46784381	49	4.5	49	83	3	270	30	28	16	24	1.96
46784157--46784388	100	2.3	99	82	2	286	30	28	16	24	1.97
46784635--46784688	27	2.0	27	85	0	72	38	14	7	38	1.75
46792940--46793171	49	4.7	49	80	3	266	29	28	18	23	1.98
46792940--46793171	100	2.3	99	83	2	295	29	28	18	23	1.98
46800398--46800442	22	2.0	22	100	0	90	13	4	26	55	1.57
46802640--46802742	43	2.4	43	100	0	206	22	15	35	26	1.94
46802724--46802796	29	2.5	29	84	8	87	27	16	31	24	1.96
46803111--46803311	40	5.0	40	86	2	253	24	21	28	25	1.99
46803111--46803343	120	1.9	120	81	5	274	25	21	27	26	1.99
46811169--46811200	15	2.1	15	94	0	55	21	25	31	21	1.98
46817551--46817647	48	2.0	48	100	0	194	36	18	22	22	1.95
46823416--46823587	93	1.8	93	95	2	310	28	29	20	20	1.98
46823409--46823584	46	3.8	46	79	14	209	29	29	20	20	1.98
46830977--46831148	93	1.8	93	95	2	310	28	29	20	20	1.98
46830970--46831145	46	3.8	46	79	14	209	29	29	20	20	1.98
46834570--46834600	15	2.0	16	93	6	55	19	0	22	58	1.40
46838954--46839574	48	13.0	48	84	8	804	34	6	28	30	1.83
46839066--46839134	34	2.0	34	94	0	120	37	10	27	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46839018--46839182	82	2.0	82	96	0	303	35	7	27	28	1.85
46839137--46839583	151	3.0	151	89	5	737	34	6	28	30	1.83
46839100--46839568	199	2.4	194	92	2	760	34	6	28	30	1.83
46839715--46839823	37	2.9	37	93	0	173	22	18	30	28	1.97
46845275--46845323	22	2.2	20	77	19	53	51	26	4	18	1.64
46846119--46846234	43	2.7	43	78	7	119	36	25	13	25	1.92
46857731--46857757	12	2.2	12	100	0	54	51	7	0	40	1.30
46858205--46858302	27	3.5	28	88	2	126	27	13	27	31	1.94
46858235--46858315	27	3.0	27	85	5	83	30	12	23	33	1.92
46864038--46864073	6	5.8	6	93	6	63	86	0	0	13	0.58
46875005--46875034	9	3.3	9	90	0	51	20	0	70	10	1.16
46875380--46876111	367	2.0	366	96	0	1349	29	24	16	28	1.97
46919277--46919605	48	6.9	48	74	4	243	27	30	16	25	1.97
46919327--46919589	96	2.8	96	82	2	298	25	29	16	28	1.97
46928456--46928640	40	4.7	40	82	7	209	24	22	27	25	2.00
46928456--46928640	79	2.3	81	83	7	227	24	22	27	25	2.00
46928509--46928673	79	2.1	79	84	6	210	26	21	27	25	1.99
46930181--46930561	48	8.0	48	77	9	350	26	29	17	25	1.98
46938511--46938561	26	2.0	26	88	0	75	19	17	19	43	1.89
46941339--46941487	39	3.8	39	88	0	208	26	27	20	24	1.99
46949140--46949292	39	3.9	39	87	3	209	28	29	19	22	1.98
46951464--46951556	27	3.4	27	92	1	141	34	24	25	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46951481--46951560	27	3.0	27	96	0	142	32	22	30	15	1.94
46951706--46951790	22	3.9	22	76	0	80	31	23	29	15	1.95
46956327--46956476	67	2.2	67	81	8	171	32	17	28	21	1.96
46956351--46956534	67	2.8	64	76	8	185	30	16	29	22	1.96
46962831--46962885	25	2.3	24	76	17	60	5	32	0	61	1.19
46964369--46964503	60	2.2	60	81	6	148	28	20	25	24	1.99
46978461--46978492	16	2.0	16	93	0	55	12	28	40	18	1.87
46980560--46980584	11	2.3	11	100	0	50	32	0	8	60	1.26
46984129--46984159	12	2.6	12	94	0	53	6	12	41	38	1.69
46987474--46987614	46	3.1	43	72	16	115	31	28	18	21	1.97
46988024--46988083	30	2.0	30	90	0	93	31	26	5	36	1.78
46992788--46992881	46	2.1	45	90	4	145	30	28	19	21	1.97
46993291--46993347	30	1.9	30	88	0	87	31	26	5	36	1.79
47001177--47001251	25	3.0	25	71	7	71	26	22	22	28	1.99
47016995--47017115	57	2.1	57	100	0	242	37	19	12	30	1.89
47025466--47025502	19	1.9	19	100	0	74	0	40	0	59	0.97
47027910--47028180	94	2.8	93	80	9	298	26	20	30	22	1.98
47031311--47031419	43	2.6	42	82	5	130	30	16	25	27	1.97
47037536--47037692	39	4.0	39	91	0	242	22	23	29	24	1.99
47039927--47040026	28	3.5	28	72	2	110	17	20	35	28	1.94
47039925--47040053	57	2.3	57	93	0	213	17	19	34	28	1.94
47039959--47040083	29	4.3	29	75	4	117	16	16	36	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47042871--47043067	39	5.1	39	90	2	290	22	22	29	25	1.99
47047847--47047947	38	2.6	38	88	3	139	23	24	26	24	2.00
47047863--47047965	38	2.7	38	87	0	134	23	24	25	27	2.00
47047963--47048117	43	3.6	43	92	0	256	12	26	31	29	1.92
47055245--47055429	79	2.3	81	84	7	236	25	27	22	24	2.00
47055245--47055429	40	4.7	40	83	7	234	25	27	22	24	2.00
47063211--47063435	40	5.7	40	86	6	246	25	27	22	24	2.00
47063211--47063435	79	2.8	79	79	9	233	25	27	22	24	2.00
47076972--47077218	47	5.3	47	90	0	388	33	8	30	27	1.86
47076972--47077214	93	2.6	94	93	1	416	33	8	30	27	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325