genome.fa.s5.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  174  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54579407--54579762	27	13.2	27	85	2	430	40	5	21	32	1.76
54579742--54579847	27	4.0	25	74	15	79	30	7	21	40	1.81
54579407--54579816	54	7.6	54	81	8	399	39	5	21	32	1.78
54579407--54579816	81	5.1	81	83	4	441	39	5	21	32	1.78
54579740--54579907	54	3.1	54	78	10	168	29	8	22	39	1.84
54579756--54579907	27	5.7	27	76	9	134	28	9	23	38	1.86
54581097--54581129	3	11.0	3	100	0	66	66	0	0	33	0.92
54586666--54586921	39	6.6	39	82	7	236	24	19	28	26	1.99
54586704--54586919	76	2.8	76	80	10	240	25	19	29	25	1.99
54594601--54594824	40	5.6	40	90	1	308	25	20	28	26	1.99
54594601--54594859	80	3.3	80	84	3	238	25	20	28	25	1.99
54605261--54605338	26	3.0	26	100	0	156	42	11	11	34	1.77
54606176--54606377	43	4.7	43	82	3	255	29	27	14	29	1.95
54606220--54606397	86	2.1	86	97	0	338	30	24	14	31	1.94
54606176--54606415	43	5.6	43	81	3	225	30	26	14	29	1.95
54606360--54606472	56	2.0	56	84	0	145	37	23	10	29	1.88
54607622--54607648	14	1.9	14	100	0	54	48	22	0	29	1.51
54610439--54610621	39	4.7	39	88	0	267	30	20	25	24	1.99
54617482--54617551	31	2.3	31	92	5	115	28	22	14	34	1.93
54617770--54617918	26	5.8	26	91	0	221	28	22	22	26	1.99
54617770--54617918	52	2.9	52	91	2	248	28	22	22	26	1.99
54618716--54618807	27	3.4	27	85	4	98	18	25	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54618860--54618911	27	1.9	27	84	7	70	36	11	11	40	1.78
54618995--54619037	21	2.0	21	86	0	59	32	9	25	32	1.88
54618947--54619087	75	1.9	75	95	2	257	29	8	22	39	1.84
54618922--54619176	80	3.2	77	81	12	279	28	7	22	41	1.81
54619025--54619181	27	5.9	27	81	4	165	28	6	22	42	1.78
54618868--54619337	27	17.6	27	75	10	151	32	8	20	38	1.83
54619168--54619298	54	2.4	54	89	0	190	41	9	20	28	1.83
54619127--54619336	81	2.6	81	74	3	215	36	8	20	34	1.83
54621737--54621934	39	5.1	39	89	0	252	29	18	27	24	1.98
54628157--54628237	34	2.4	34	84	12	105	30	18	19	30	1.96
54633558--54633646	42	2.1	42	82	0	106	38	19	14	28	1.91
54633788--54633916	51	2.6	51	93	2	226	27	22	21	27	1.99
54633788--54633916	25	5.1	25	84	3	179	27	22	21	27	1.99
54633966--54634052	20	4.3	20	89	2	131	29	18	11	40	1.86
54634760--54634823	27	2.4	27	81	5	76	21	25	17	35	1.95
54634854--54634987	27	5.0	27	77	0	142	30	7	20	41	1.80
54634857--54635007	27	5.6	27	74	4	126	28	6	22	42	1.78
54634854--54635007	54	2.8	53	80	3	164	29	7	22	41	1.80
54634877--54635037	81	2.0	81	80	4	182	29	7	20	42	1.79
54635039--54635130	27	3.4	27	83	5	123	38	8	25	28	1.85
54637407--54637498	42	2.2	42	90	0	139	34	20	14	30	1.92
54637631--54637792	26	6.3	26	89	2	242	27	23	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54637842--54637908	20	3.3	20	93	4	109	31	19	10	38	1.85
54638713--54638843	54	2.4	54	83	0	145	31	9	19	39	1.83
54638713--54638863	27	5.6	27	71	4	108	29	8	21	40	1.83
54638895--54638980	27	3.2	27	89	0	136	38	8	24	29	1.84
54643370--54643482	43	2.7	43	87	4	158	25	28	18	27	1.98
54647554--54647775	40	5.6	40	86	3	288	23	25	22	27	2.00
54649767--54649995	127	1.8	126	84	4	318	35	14	16	33	1.89
54652241--54652273	4	8.2	4	87	12	50	72	0	3	24	0.98
54652351--54652421	3	23.7	3	94	0	124	67	29	0	2	1.05
54652349--54652430	6	13.7	6	96	0	74	67	25	0	7	1.17
54655938--54656083	41	3.6	41	81	1	195	21	23	27	28	1.99
54658229--54658323	44	2.2	42	83	7	111	34	28	15	21	1.94
54659396--54659420	13	1.9	13	100	0	50	40	24	4	32	1.73
54662318--54662381	31	2.1	31	90	0	101	25	23	15	35	1.94
54662596--54662714	23	5.1	23	94	1	202	30	21	21	26	1.98
54662765--54662831	20	3.3	20	91	0	107	32	22	11	32	1.90
54670441--54670503	30	2.1	31	87	3	92	23	22	15	38	1.93
54671667--54671844	46	3.9	46	93	0	284	24	32	8	34	1.86
54671848--54672202	47	7.5	45	92	3	467	27	28	12	32	1.92
54671848--54672202	94	3.8	94	91	0	550	27	28	12	32	1.92
54671862--54672202	141	2.4	141	90	0	556	26	28	12	32	1.93
54681168--54681345	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54681169--54681324	82	1.9	81	88	3	233	26	15	28	29	1.96
54681165--54681345	82	2.2	81	83	2	229	27	15	27	29	1.96
54685024--54685084	30	2.0	30	87	0	86	39	6	22	31	1.80
54691394--54691552	43	3.7	43	81	9	191	33	26	18	22	1.96
54694861--54694911	25	2.0	25	92	0	84	31	23	19	25	1.98
54694955--54694989	10	3.4	10	92	7	61	34	17	17	31	1.93
54695035--54695091	24	2.4	24	76	5	62	31	19	21	28	1.97
54702607--54702657	25	2.0	25	88	0	75	33	23	17	25	1.96
54702697--54702735	10	3.8	10	93	6	69	33	17	17	30	1.94
54702696--54702735	21	1.9	21	100	0	80	35	17	17	30	1.93
54702780--54702849	25	2.9	24	93	4	122	24	27	22	25	2.00
54702780--54702862	24	3.4	24	90	6	123	27	24	24	24	2.00
54702780--54702874	49	1.9	49	85	8	131	26	25	24	24	2.00
54704374--54704401	9	3.1	9	100	0	56	57	0	10	32	1.33
54706344--54706528	40	4.6	39	83	6	212	23	22	28	25	1.99
54706344--54706526	79	2.3	81	83	7	223	24	22	27	25	2.00
54706397--54706551	79	2.0	79	82	7	190	25	20	27	26	1.99
54719411--54719808	27	14.7	27	83	4	328	39	20	9	30	1.84
54719431--54719778	54	6.4	54	86	0	383	39	20	8	30	1.83
54719411--54719805	81	4.9	81	82	5	406	40	20	9	30	1.84
54720258--54720285	11	2.5	11	100	0	56	35	0	10	53	1.36
54721797--54721908	27	4.1	27	78	10	104	37	21	24	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54728878--54728911	18	1.9	18	88	5	52	14	26	44	14	1.84
54729017--54729209	80	2.4	81	83	6	257	27	15	16	40	1.89
54729026--54729209	27	6.9	27	86	2	255	27	14	17	40	1.88
54729518--54729558	18	2.4	17	87	4	55	21	19	17	41	1.90
54735720--54735761	17	2.3	19	88	8	61	66	2	2	28	1.16
54739973--54740059	33	2.6	33	88	3	129	25	25	27	21	2.00
54739960--54740074	34	3.5	33	76	15	112	28	21	24	25	1.99
54747167--54747260	28	3.4	27	68	16	75	25	12	32	28	1.93
54747165--54747272	56	1.9	57	92	3	182	27	12	30	29	1.92
54754858--54754959	28	3.6	28	75	19	113	27	16	29	26	1.97
54754858--54754974	56	2.1	56	95	0	207	26	17	30	25	1.97
54754886--54754974	28	3.2	28	71	17	94	25	16	31	25	1.97
54758262--54758294	14	2.4	14	90	10	50	60	0	0	39	0.97
54759189--54759228	21	2.0	20	85	5	53	42	10	17	30	1.82
54760841--54760899	30	2.0	30	89	0	91	28	15	27	28	1.96
54763673--54763843	93	1.8	93	93	0	297	28	28	21	22	1.99
54763668--54763840	46	3.7	46	74	13	174	29	27	20	22	1.99
54769036--54769209	40	4.4	40	86	2	208	26	21	27	24	1.99
54775262--54775433	93	1.8	93	96	0	317	27	29	21	20	1.98
54775255--54775430	46	3.8	46	79	12	216	28	29	21	20	1.98
54777320--54777408	30	3.0	30	80	8	101	57	15	16	10	1.65
54777320--54777399	15	5.4	15	80	7	92	58	13	17	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54777331--54777408	15	5.2	15	78	9	79	56	15	16	11	1.67
54780291--54780378	46	1.9	46	88	0	122	27	30	22	19	1.98
54781706--54781875	93	1.8	92	89	1	268	28	28	20	22	1.98
54781701--54781870	46	3.7	46	75	11	177	28	27	20	23	1.99
54782294--54782353	30	2.0	30	86	0	84	30	25	10	35	1.88
54787990--54788049	30	2.0	30	90	0	93	53	16	18	11	1.72
54787992--54788045	15	3.6	15	76	0	63	55	12	18	12	1.69
54787992--54788054	15	4.2	15	72	8	56	53	15	17	12	1.72
54803590--54803650	27	2.3	27	85	5	79	26	9	24	39	1.86
54813840--54813895	27	2.1	27	82	0	67	32	19	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325