Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  134  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41835301--41835343
3
14.7
3
86
13
63
67
2
0
30
1.03
41837424--41837626
82
2.5
82
95
0
363
49
14
6
28
1.69
41837703--41838175
159
3.0
155
81
8
499
32
12
16
37
1.87
41843423--41843487
28
2.3
28
91
0
103
32
27
9
30
1.88
41843605--41843681
26
2.8
27
88
9
111
22
25
20
31
1.98
41850130--41850162
12
2.6
13
85
9
50
9
45
0
45
1.35
41851227--41851291
28
2.3
28
91
0
103
32
27
9
30
1.88
41851397--41851487
28
3.2
28
90
4
139
20
24
23
31
1.98
41851397--41851512
56
2.1
55
82
9
137
19
24
21
34
1.96
41851940--41851980
18
2.3
18
86
0
55
24
2
4
68
1.22
41853681--41853724
19
2.3
19
84
4
52
29
2
4
63
1.26
41859279--41859332
19
2.8
19
88
5
74
27
18
7
46
1.76
41864751--41865420
335
2.0
335
96
0
1223
35
16
21
27
1.95
41867814--41868085
94
2.9
95
89
1
411
33
16
19
30
1.94
41867771--41868409
44
13.8
45
66
11
265
34
16
19
30
1.94
41868181--41868441
96
2.9
89
74
7
270
34
17
18
29
1.94
41868004--41868441
183
2.4
182
81
7
458
33
16
18
30
1.94
41868330--41868440
45
2.5
45
82
1
125
32
18
18
31
1.94
41873984--41874034
24
2.0
24
85
14
66
62
3
1
31
1.24
41874374--41874431
23
2.5
24
75
10
59
68
0
1
29
0.99
41876099--41876136
19
2.0
19
100
0
76
26
15
0
57
1.38
41876142--41876206
32
2.0
32
100
0
130
35
24
6
33
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41877394--41877431
19
2.0
20
94
5
69
21
23
2
52
1.59
41878129--41878161
17
1.9
17
93
0
57
15
21
42
21
1.89
41888752--41888798
23
2.0
23
100
0
94
27
38
8
25
1.85
41892143--41892170
8
3.5
8
100
0
56
28
0
10
60
1.30
41892650--41892693
21
2.2
20
83
4
52
63
4
4
27
1.33
41904745--41904893
25
6.0
25
93
0
219
26
15
10
47
1.78
41904807--41904877
12
5.7
12
72
8
52
28
14
8
49
1.72
41905693--41905958
45
6.0
45
89
4
355
24
21
26
28
1.99
41908258--41908301
19
2.3
20
80
7
56
40
0
2
56
1.11
41911347--41911409
30
2.1
30
93
0
108
26
4
9
58
1.49
41912331--41912387
28
2.0
28
93
0
96
28
29
10
31
1.90
41915230--41915294
29
2.2
29
83
5
78
30
9
10
49
1.69
41924883--41924921
3
13.0
3
88
0
60
30
2
2
64
1.21
41936428--41936453
1
26.0
1
100
0
52
100
0
0
0
0.00
41937862--41937961
38
2.6
38
75
12
96
30
21
19
30
1.97
41937863--41938351
44
11.5
44
71
12
217
30
20
22
26
1.98
41937862--41938235
173
2.2
166
88
6
542
30
19
22
27
1.98
41937940--41938280
88
3.9
85
74
8
303
30
20
23
25
1.99
41938027--41938264
128
1.9
128
80
9
279
28
20
23
27
1.99
41937940--41938312
85
4.3
88
73
11
308
29
21
23
26
1.99
41938024--41938425
216
1.9
216
85
1
556
29
21
22
25
1.99
41939733--41939771
3
13.0
3
88
0
60
30
2
2
64
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41948499--41948671
46
3.7
46
79
13
210
23
21
26
28
1.99
41948496--41948667
93
1.8
93
93
0
299
23
21
27
27
1.99
41956049--41956176
46
2.8
46
90
0
202
23
22
25
28
1.99
41958987--41959027
19
2.1
20
86
4
57
39
19
4
36
1.73
41959616--41959728
37
2.9
41
76
14
130
31
23
20
24
1.98
41960699--41960740
19
2.1
21
86
8
61
30
7
4
57
1.47
41967041--41967154
41
2.9
40
76
15
130
31
24
20
23
1.98
41967897--41967928
17
1.9
16
93
6
55
0
21
0
78
0.76
41967899--41967940
21
2.0
21
81
9
50
0
23
2
73
0.94
41969625--41969698
26
2.9
26
85
2
105
18
27
22
31
1.98
41972392--41972437
20
2.3
20
88
0
65
34
15
26
23
1.94
41972392--41972438
10
4.7
10
83
0
58
34
14
27
23
1.94
41974488--41974570
30
2.7
31
78
12
100
13
22
1
62
1.37
41974546--41974570
12
2.1
12
100
0
50
8
16
0
76
1.02
41974573--41974604
12
2.7
12
100
0
64
28
15
12
43
1.83
41974651--41974713
5
12.0
5
79
12
56
1
15
4
77
1.01
41975644--41975686
11
3.8
11
84
3
50
16
2
4
76
1.05
41977294--41977339
20
2.3
20
92
0
74
34
17
26
21
1.95
41977294--41977340
10
4.7
10
83
0
58
34
17
27
21
1.95
41978413--41978566
79
1.9
79
100
0
308
18
27
14
39
1.90
41985614--41985656
23
2.0
23
86
9
63
48
9
0
41
1.35
42008672--42008717
20
2.3
20
96
0
83
32
32
0
34
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42025183--42025216
14
2.4
14
90
0
50
35
2
20
41
1.68
42026077--42026120
15
2.9
15
82
0
61
11
18
13
56
1.66
42029012--42029054
19
2.2
20
87
8
61
25
9
18
46
1.79
42029186--42029271
45
1.9
44
88
6
129
25
12
25
36
1.92
42033415--42033594
90
2.0
90
96
0
333
22
18
23
35
1.96
42039772--42039925
42
3.6
44
75
15
160
23
15
28
32
1.95
42039771--42039925
44
3.6
44
78
12
160
23
15
29
32
1.95
42044146--42044187
12
3.5
12
96
0
75
23
42
26
7
1.80
42050184--42050267
42
2.0
42
95
2
152
27
14
8
50
1.71
42054279--42054328
25
2.0
25
100
0
100
44
20
8
28
1.79
42064179--42064270
27
3.4
27
85
5
123
28
25
7
39
1.83
42064152--42064280
54
2.4
52
78
8
125
30
24
10
35
1.88
42064269--42064510
107
2.2
108
79
6
274
41
17
8
32
1.80
42064299--42064529
54
4.3
54
78
4
214
41
18
8
32
1.81
42064299--42064451
27
5.7
27
88
1
209
42
20
7
29
1.79
42064459--42064514
27
2.1
26
87
9
78
39
12
10
37
1.78
42064299--42064534
110
2.2
107
83
2
283
40
19
8
31
1.81
42064555--42064628
27
2.7
27
76
12
71
37
20
20
21
1.94
42064568--42064632
27
2.4
27
82
5
78
35
18
24
21
1.96
42065441--42065510
25
2.8
24
89
4
95
24
27
22
25
2.00
42065658--42065750
42
2.2
42
92
5
152
31
15
20
33
1.93
42065774--42065914
31
4.5
31
95
0
255
29
17
25
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42072776--42072845
24
3.0
24
85
2
88
28
24
2
44
1.68
42080510--42080602
46
2.0
46
91
0
150
33
16
29
21
1.95
42083122--42083231
26
4.2
26
94
2
177
34
4
24
36
1.76
42084843--42084980
27
5.2
27
86
4
174
18
24
23
34
1.96
42088923--42089032
26
4.2
26
92
2
168
35
4
23
36
1.76
42090462--42090536
26
2.8
26
85
4
87
34
21
12
32
1.90
42090640--42090766
27
4.7
27
86
1
164
18
26
22
32
1.97
42092932--42092964
11
3.0
11
95
0
57
0
33
0
66
0.92
42092967--42093020
17
3.2
16
81
7
54
9
12
11
66
1.44
42093274--42093338
18
3.5
18
71
8
58
26
16
10
46
1.80
42093267--42093343
38
2.0
38
97
0
145
28
18
11
41
1.85
42099530--42099575
23
2.0
23
95
0
83
50
34
6
8
1.59
42099530--42099599
27
2.7
27
82
8
85
48
35
5
10
1.60
42100584--42100623
17
2.4
17
91
4
64
7
10
12
70
1.35
42104989--42105112
4
30.8
4
68
11
65
21
10
2
65
1.35
42105198--42105239
21
2.0
21
95
0
75
26
9
2
61
1.39
42105193--42105236
21
2.1
22
87
8
65
25
9
2
63
1.35
42105923--42106030
26
4.2
26
92
2
173
33
7
23
36
1.83
42109503--42109543
22
2.0
20
85
9
55
63
0
7
29
1.21
42115578--42115609
15
2.1
15
94
0
55
28
9
25
37
1.87
42116451--42116500
20
2.5
20
84
9
59
72
2
12
14
1.22
42120481--42120535
26
2.2
24
77
6
56
25
1
7
65
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42127124--42127670
70
7.7
70
79
4
479
23
17
25
33
1.96
42134129--42134166
15
2.5
15
84
12
51
71
2
2
23
1.12
42142171--42142211
22
1.9
22
90
5
66
43
0
2
53
1.13
42143123--42143182
30
2.0
30
93
0
102
60
13
0
26
1.34
42143511--42143557
24
1.9
24
86
4
67
53
4
4
38
1.40
42143915--42143945
14
2.2
14
94
0
53
41
3
19
35
1.67
42153319--42153729
188
2.2
189
90
1
646
32
25
12
30
1.92
42154568--42154595
8
3.5
8
100
0
56
78
0
21
0
0.75
42154786--42154827
3
14.0
3
100
0
84
66
0
33
0
0.92
42155471--42155500
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325