genome.fa.s5.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  143  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45064583--45064627	22	2.0	22	95	0	81	35	8	20	35	1.84
45067772--45067827	28	2.0	28	100	0	112	50	7	21	21	1.72
45071508--45071555	22	2.1	22	85	11	62	45	0	25	29	1.53
45071822--45071898	28	2.8	28	72	14	79	41	0	23	35	1.55
45072027--45072123	38	2.5	39	73	10	99	21	19	29	28	1.98
45079053--45079096	16	2.7	16	82	3	52	22	13	2	61	1.43
45081416--45081569	57	2.7	58	80	8	165	31	20	15	32	1.94
45086191--45086321	47	2.8	47	85	0	172	22	12	29	35	1.91
45090610--45090651	22	1.9	22	85	0	57	45	14	7	33	1.72
45094563--45094929	47	7.8	45	74	9	229	27	18	29	24	1.98
45094563--45094927	140	2.6	142	80	6	393	27	18	28	24	1.98
45107360--45107490	47	2.8	47	84	0	163	22	12	29	35	1.91
45111688--45111729	22	1.9	22	90	0	66	45	11	7	35	1.69
45113140--45113365	47	4.8	46	73	15	162	27	19	29	23	1.98
45120585--45120948	47	7.7	46	72	9	204	26	18	29	25	1.98
45120636--45120948	47	6.6	47	74	13	207	26	18	29	25	1.98
45132861--45132969	41	2.7	40	76	12	105	23	18	20	37	1.94
45138860--45138987	55	2.3	56	78	9	145	16	29	28	25	1.97
45151147--45151245	41	2.5	40	81	6	110	22	23	23	31	1.99
45153961--45153995	17	2.1	17	94	0	61	48	5	2	42	1.41
45163237--45163289	20	2.7	20	91	2	81	22	32	13	32	1.92
45169584--45169749	46	3.7	45	77	11	155	25	31	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45175339--45175457	45	2.7	44	82	7	159	26	30	19	24	1.98
45183587--45183623	14	2.6	15	83	12	51	75	0	5	18	0.99
45194499--45194523	13	1.9	13	100	0	50	32	32	24	12	1.91
45197864--45198017	29	5.3	29	92	0	238	25	12	30	31	1.93
45212063--45212187	29	4.3	29	86	1	180	26	12	31	29	1.93
45219715--45219807	27	3.4	27	77	0	87	37	24	6	31	1.81
45219803--45219900	27	3.7	25	77	11	88	39	17	16	26	1.90
45219809--45219913	54	2.0	53	83	5	131	38	16	20	25	1.92
45219822--45219917	27	3.6	27	82	0	102	36	16	20	26	1.94
45220058--45220089	16	2.0	16	93	0	55	31	18	15	34	1.93
45220272--45220319	20	2.4	20	82	0	69	10	18	33	37	1.85
45220534--45220597	25	2.6	25	84	0	83	18	21	12	46	1.82
45220594--45220627	18	1.9	17	88	5	50	17	11	17	52	1.73
45240656--45240695	13	3.1	13	96	0	71	15	30	37	17	1.90
45264257--45264303	17	2.5	20	73	23	55	34	34	2	29	1.70
45264266--45264300	17	2.1	17	94	0	61	34	34	0	31	1.58
45267009--45267190	40	4.6	40	91	2	269	21	21	26	29	1.99
45273537--45273602	34	2.0	33	85	8	89	28	18	21	31	1.96
45282861--45282927	25	2.7	23	71	15	62	31	14	26	26	1.95
45282940--45282987	25	2.0	25	87	4	71	31	20	25	22	1.98
45282959--45283327	25	14.8	25	71	11	174	35	18	26	19	1.95
45282998--45283153	49	3.1	52	74	12	128	34	19	26	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45283111--45283303	75	2.6	75	92	1	316	36	17	27	18	1.93
45283182--45283322	50	2.8	50	86	2	203	34	18	26	19	1.95
45288765--45288797	10	3.4	10	91	4	50	0	9	0	90	0.44
45290359--45290390	8	4.0	8	100	0	64	37	12	37	12	1.81
45307585--45307641	5	11.0	5	77	17	55	77	3	17	1	1.00
45307585--45307641	16	3.7	14	80	17	60	77	3	17	1	1.00
45307758--45307796	18	2.1	19	85	4	53	66	2	23	7	1.30
45309320--45309369	25	2.0	25	100	0	100	24	28	20	28	1.99
45309390--45309475	30	2.9	30	77	5	86	27	24	17	30	1.97
45323116--45323188	37	2.0	37	91	0	119	47	10	19	21	1.79
45323504--45323559	23	2.5	23	80	11	71	55	7	0	37	1.27
45326946--45327000	15	3.8	15	73	21	55	43	1	0	54	1.10
45327398--45327436	18	2.2	18	86	9	53	61	12	0	25	1.31
45327445--45327513	22	3.2	22	74	17	81	50	7	4	37	1.50
45327438--45327522	43	2.0	43	97	0	161	54	5	3	36	1.42
45328409--45328453	19	2.3	20	85	7	58	64	4	0	31	1.13
45328481--45328523	19	2.3	19	84	8	52	62	0	2	34	1.08
45328618--45328674	30	1.9	30	89	7	89	40	0	1	57	1.09
45328952--45329007	29	1.9	29	85	0	76	53	14	1	30	1.51
45329310--45329353	18	2.3	20	88	7	65	81	6	4	6	0.97
45329515--45329973	212	2.2	213	93	3	791	40	9	6	44	1.63
45330028--45330071	17	2.4	19	88	7	65	9	6	6	77	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45330500--45330548	17	2.9	17	79	14	57	44	0	2	53	1.12
45335061--45335314	83	3.0	83	90	3	402	42	12	19	25	1.86
45337054--45337089	17	2.1	18	89	5	56	38	22	27	11	1.88
45340066--45340114	20	2.5	20	89	0	80	46	0	14	38	1.44
45355876--45355931	28	2.0	28	100	0	112	32	14	14	39	1.86
45358624--45358662	19	2.1	19	100	0	78	25	25	20	28	1.99
45373057--45373124	3	22.7	3	96	0	127	30	0	1	67	0.99
45378222--45378246	13	1.9	13	100	0	50	88	0	12	0	0.53
45378732--45378832	53	1.9	53	89	0	157	21	14	5	57	1.59
45379245--45379334	46	2.0	46	84	4	119	33	14	23	28	1.94
45380550--45380605	18	3.3	17	81	13	62	7	12	1	78	1.02
45381282--45381320	3	13.0	3	100	0	78	33	0	0	66	0.92
45389578--45389627	19	2.7	18	81	9	55	68	4	2	26	1.18
45389874--45389964	48	1.9	46	88	4	137	38	3	1	57	1.23
45389918--45389975	31	1.9	29	89	6	89	43	1	1	53	1.21
45389921--45389985	29	2.2	28	84	10	78	43	1	1	53	1.19
45396248--45396345	28	3.5	28	90	5	137	32	27	13	26	1.93
45404513--45404610	27	3.5	28	88	5	128	32	28	13	25	1.93
45411114--45411159	18	2.6	17	89	3	65	6	23	0	69	1.11
45411114--45411168	17	3.2	17	89	2	74	5	23	0	70	1.07
45413998--45414028	14	2.2	14	94	0	53	9	22	0	67	1.19
45414038--45414315	102	2.7	104	82	9	304	26	28	2	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45419969--45420004	18	2.1	18	94	5	65	66	0	0	33	0.92
45433677--45433721	23	2.0	23	82	4	56	37	2	17	42	1.62
45433664--45433734	22	3.4	21	75	11	65	33	2	18	45	1.64
45437262--45437302	21	1.9	22	85	5	57	34	24	17	24	1.96
45442003--45442068	27	2.5	27	97	2	125	18	22	18	40	1.91
45466400--45466432	16	2.1	16	100	0	66	27	24	18	30	1.98
45478135--45478165	12	2.5	13	94	5	55	35	0	6	58	1.24
45484360--45484407	20	2.4	19	80	16	53	35	4	2	58	1.29
45486593--45486626	11	2.8	12	86	13	52	26	0	0	73	0.83
45486600--45486627	11	2.5	11	100	0	56	25	0	0	75	0.81
45486749--45486811	30	2.1	30	90	0	99	55	14	3	26	1.54
45486841--45486883	22	2.0	22	85	0	59	55	9	13	20	1.66
45488057--45488229	38	4.6	38	79	2	188	35	27	20	15	1.93
45490556--45490606	19	2.7	19	81	0	66	56	0	1	41	1.10
45499179--45499233	27	2.0	27	96	0	101	27	34	0	38	1.57
45499644--45499716	24	3.0	24	85	0	101	35	23	28	12	1.91
45503592--45503637	23	2.0	23	91	0	74	23	28	28	19	1.98
45518741--45518765	5	5.0	5	100	0	50	80	0	0	20	0.72
45522062--45522115	27	2.0	27	100	0	108	51	3	0	44	1.19
45522069--45522127	27	2.2	27	85	8	77	50	5	0	44	1.24
45522688--45522739	16	3.2	16	81	8	52	63	1	0	34	1.06
45523033--45523086	26	2.1	26	100	0	108	40	18	18	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45526839--45526912	31	2.4	31	93	0	130	14	32	35	17	1.91
45532564--45532765	101	2.0	101	100	0	404	46	10	15	26	1.79
45536096--45536144	12	3.8	12	75	15	53	24	4	8	63	1.40
45557322--45557361	21	2.0	20	85	9	55	27	5	10	57	1.52
45557436--45557460	12	2.1	12	100	0	50	48	8	12	32	1.69
45558484--45558572	34	2.6	33	87	5	124	48	1	14	35	1.52
45558673--45558941	126	2.1	127	85	5	350	35	15	17	31	1.91
45561955--45561985	14	2.2	14	94	0	53	25	6	9	58	1.54
45562362--45562386	12	2.1	12	100	0	50	8	24	36	32	1.84
45573884--45573967	27	3.1	26	69	8	69	55	8	8	27	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325