genome.fa.s5.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  176  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55326391--55326653	40	6.6	40	87	3	316	26	28	20	24	1.99
55334265--55334519	39	6.6	40	80	10	239	25	28	20	25	1.99
55334265--55334519	77	3.3	77	82	9	265	25	28	20	25	1.99
55334265--55334483	116	1.9	117	80	11	263	25	28	20	26	1.99
55342037--55342198	39	4.2	39	79	7	161	25	27	23	22	2.00
55350969--55351138	27	6.3	27	85	0	198	25	21	17	36	1.94
55353832--55353915	42	2.0	42	86	6	116	25	16	25	33	1.96
55357087--55357180	6	15.3	6	72	16	77	48	15	18	17	1.81
55357101--55357180	31	2.6	31	91	0	124	48	16	18	16	1.81
55357283--55357436	67	2.3	67	94	0	263	30	21	29	18	1.97
55357666--55357905	81	3.0	81	86	3	324	25	20	17	36	1.94
55357666--55357905	27	8.9	27	87	4	288	25	20	17	36	1.94
55357915--55358033	27	4.4	27	88	0	166	40	10	21	27	1.85
55360306--55360364	25	2.4	25	94	0	100	28	25	20	25	1.99
55361258--55361295	20	1.9	20	94	0	67	23	7	0	68	1.16
55367408--55367443	17	2.1	17	100	0	72	50	5	22	22	1.70
55369972--55370024	23	2.4	22	76	20	56	9	18	1	69	1.25
55373570--55373636	27	2.6	27	77	13	77	44	4	0	50	1.22
55375881--55376007	47	2.7	47	77	9	134	33	23	20	22	1.97
55380601--55380711	42	2.6	43	82	4	127	25	18	31	24	1.98
55380737--55380822	22	3.9	22	70	8	68	15	25	22	37	1.93
55380838--55380914	30	2.5	32	81	8	79	25	22	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55383922--55383962	21	2.0	21	85	0	55	26	2	9	60	1.40
55384214--55384288	26	2.9	26	79	0	96	18	24	21	36	1.95
55392076--55392143	29	2.3	29	85	5	93	27	30	13	27	1.94
55392245--55392323	29	2.7	30	82	13	110	29	30	15	25	1.96
55400242--55400309	29	2.3	29	85	5	93	27	30	13	27	1.94
55400411--55400489	29	2.7	30	82	13	110	29	30	15	25	1.96
55409519--55409556	19	2.0	19	85	10	51	18	10	0	71	1.14
55411768--55411828	31	2.0	31	100	0	122	24	13	3	59	1.49
55422141--55422178	19	2.1	18	85	14	51	36	0	2	60	1.11
55424076--55424206	56	2.4	55	88	1	190	29	12	24	32	1.93
55426595--55426645	26	2.0	26	88	0	75	41	23	17	17	1.90
55429138--55429247	44	2.6	42	79	11	116	31	23	19	25	1.98
55429096--55429242	42	3.4	43	74	13	133	29	23	19	27	1.98
55438299--55438388	29	3.1	28	87	7	119	30	28	10	31	1.89
55443088--55443165	40	2.0	39	84	2	102	26	17	25	29	1.98
55453539--55453710	93	1.8	93	95	2	310	28	29	20	20	1.98
55453532--55453707	46	3.8	46	79	14	209	29	29	20	20	1.98
55467748--55467929	45	4.0	44	75	13	181	29	29	20	20	1.98
55467755--55467924	92	1.8	92	92	5	290	28	29	20	21	1.98
55475300--55475471	93	1.8	93	95	2	310	29	29	20	21	1.98
55475293--55475468	46	3.8	46	78	14	209	30	28	19	21	1.98
55481196--55481356	44	3.7	43	78	8	177	24	16	25	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55481198--55481354	43	3.7	42	82	5	147	24	15	24	34	1.95
55485748--55485981	106	2.2	105	90	2	353	27	29	15	27	1.96
55488890--55488955	31	2.1	31	97	0	123	22	12	12	53	1.71
55490887--55490994	28	3.9	28	86	0	153	24	14	33	27	1.94
55490892--55491001	56	2.0	56	96	0	202	24	15	33	26	1.95
55491333--55491663	80	4.1	80	85	5	400	38	19	9	31	1.85
55491333--55491692	161	2.2	161	83	5	451	38	20	10	31	1.86
55491324--55491663	27	12.7	27	84	7	408	38	19	10	31	1.85
55491400--55491703	27	11.3	27	82	8	155	38	18	11	31	1.86
55495266--55495403	40	3.5	40	91	3	217	24	27	23	24	2.00
55520966--55520990	9	2.8	9	100	0	50	36	8	12	44	1.71
55530723--55531439	47	15.3	47	92	0	1148	33	9	29	28	1.88
55534386--55534488	44	2.3	45	81	6	113	32	24	16	27	1.96
55550213--55550377	90	1.8	90	82	2	215	26	26	19	28	1.99
55550306--55550394	42	2.1	42	80	0	97	30	31	13	24	1.94
55551922--55552000	31	2.5	31	93	0	131	26	22	18	31	1.97
55552206--55552343	26	5.3	26	86	2	199	27	22	19	30	1.98
55553141--55553227	27	3.2	27	91	3	131	18	26	20	34	1.96
55553281--55553332	27	1.9	27	88	7	79	34	11	11	42	1.77
55553371--55553683	27	11.6	27	81	4	256	31	8	20	39	1.82
55553371--55553575	81	2.5	80	88	3	304	29	8	20	41	1.81
55560276--55560335	29	2.1	29	100	0	120	56	3	3	36	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55560862--55560901	19	2.1	19	85	0	53	42	12	10	35	1.76
55562786--55562905	47	2.6	47	84	7	147	32	25	15	25	1.96
55573662--55573716	27	2.0	27	100	0	110	21	9	36	32	1.85
55582148--55582270	43	2.9	43	87	4	169	24	20	30	25	1.99
55582306--55582384	22	3.6	21	79	3	77	16	30	24	29	1.96
55582372--55582485	32	3.7	30	75	9	97	23	21	17	37	1.94
55585677--55585781	27	4.0	27	90	5	160	33	21	13	31	1.92
55585677--55585781	52	2.0	54	88	3	160	33	21	13	31	1.92
55604607--55604729	43	2.9	43	87	4	169	24	20	30	25	1.99
55604765--55604843	22	3.6	21	79	3	77	16	30	24	29	1.96
55604831--55604944	32	3.7	30	75	9	97	23	21	17	37	1.94
55608154--55608265	27	4.1	27	94	0	179	33	24	12	30	1.92
55608554--55608636	43	1.9	43	90	4	132	21	21	33	22	1.97
55608735--55608806	32	2.3	31	88	4	101	22	22	19	36	1.95
55610555--55610684	47	2.8	47	86	0	179	30	29	16	23	1.96
55621576--55621749	46	3.8	44	79	9	188	28	29	21	20	1.98
55621583--55621754	92	1.9	93	93	1	301	27	30	21	20	1.98
55624138--55624214	14	5.4	15	77	14	83	58	12	16	11	1.63
55628547--55628647	29	3.5	29	89	1	150	26	14	28	29	1.95
55630250--55630424	46	3.8	45	76	7	163	28	29	20	21	1.98
55630257--55630429	93	1.9	93	90	0	274	27	30	20	21	1.98
55630301--55630444	46	3.1	46	68	21	111	30	27	18	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55642173--55642221	21	2.3	22	92	3	82	44	24	10	20	1.82
55642153--55642221	22	3.2	22	83	8	88	42	21	13	23	1.88
55642424--55642483	15	3.8	15	71	16	50	48	21	3	26	1.66
55646801--55646959	43	3.7	43	83	3	185	28	13	25	32	1.94
55650244--55650446	40	5.1	40	94	0	352	34	28	20	16	1.94
55654469--55654522	11	4.9	11	90	6	83	70	9	1	18	1.23
55655074--55655114	21	2.0	21	90	0	64	36	24	17	21	1.94
55655747--55655795	11	4.5	11	92	7	82	75	10	0	14	1.04
55655747--55655795	21	2.2	22	92	7	82	75	10	0	14	1.04
55656352--55656392	21	2.0	21	90	0	64	36	24	17	21	1.94
55657925--55657961	16	2.2	17	90	4	58	83	0	10	5	0.79
55670436--55670501	33	2.0	33	100	0	132	27	15	18	39	1.90
55673267--55673307	21	2.0	21	85	9	57	51	0	2	46	1.14
55676760--55676883	26	5.1	25	66	16	64	62	6	6	25	1.44
55676766--55676839	26	2.8	25	76	10	67	59	8	8	24	1.53
55676844--55676881	20	1.9	19	94	5	67	71	5	2	21	1.19
55676852--55676928	24	3.2	24	75	17	70	64	5	2	27	1.27
55676952--55677209	28	9.5	26	68	15	105	58	3	6	32	1.40
55676869--55677224	26	13.6	26	68	11	111	57	3	6	32	1.41
55677104--55677226	54	2.3	55	78	14	139	57	3	5	33	1.38
55677177--55677270	44	2.2	42	82	3	107	59	6	5	28	1.44
55678306--55678361	14	3.9	13	80	19	51	0	8	14	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55678307--55678370	15	4.4	15	80	20	66	0	7	17	75	1.04
55678667--55678764	48	2.0	48	90	0	151	39	7	16	36	1.76
55682669--55682841	49	3.5	49	80	3	211	26	17	25	30	1.97
55682663--55682860	100	2.0	99	91	1	324	25	18	25	30	1.98
55682677--55682887	100	2.1	100	85	3	282	27	17	26	29	1.98
55691830--55691949	27	4.4	27	82	0	150	37	20	18	24	1.94
55691830--55691949	54	2.2	54	88	5	172	37	20	18	24	1.94
55696898--55696994	26	3.8	26	94	1	144	25	20	23	29	1.99
55696898--55696994	51	1.9	51	87	4	142	25	20	23	29	1.99
55699222--55699457	50	4.7	50	72	7	190	30	24	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325