genome.fa.s5.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  221  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69397263--69397311	26	2.0	24	88	8	71	61	6	2	30	1.32
69401241--69401306	30	2.2	31	81	8	73	59	1	0	39	1.07
69402078--69402124	21	2.1	23	84	7	62	44	0	0	55	0.99
69402969--69403013	21	2.1	21	84	8	56	4	44	20	31	1.71
69403423--69403451	14	2.1	14	93	6	51	58	6	0	34	1.25
69408536--69408642	9	11.7	9	73	11	83	39	1	14	44	1.55
69408536--69408636	18	5.5	18	75	13	98	38	1	13	45	1.55
69409018--69409042	5	5.0	5	100	0	50	80	0	0	20	0.72
69409112--69409136	5	5.0	5	100	0	50	80	0	0	20	0.72
69409209--69409233	5	5.0	5	100	0	50	80	0	0	20	0.72
69408835--69409291	97	4.8	97	92	3	743	54	4	5	34	1.45
69409254--69409438	99	1.9	97	86	6	266	42	5	7	44	1.56
69410101--69410155	8	7.0	8	79	4	58	34	30	1	32	1.69
69411735--69412114	157	2.4	155	78	9	364	30	21	12	35	1.91
69413561--69413639	38	2.1	37	83	6	97	25	24	18	31	1.98
69413640--69413723	39	2.1	39	86	2	114	16	20	22	40	1.91
69414131--69414158	12	2.3	12	100	0	56	7	7	32	53	1.55
69414164--69414401	111	2.1	111	92	1	388	39	15	23	21	1.92
69414355--69414468	41	2.8	41	85	4	142	39	12	25	22	1.89
69414475--69414685	7	29.3	7	70	11	70	19	1	30	48	1.58
69414566--69414620	28	1.9	28	88	3	83	20	0	30	49	1.49
69414496--69414624	43	3.0	43	75	8	111	20	0	27	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69414532--69414682	64	2.3	65	83	6	182	18	1	32	47	1.57
69414789--69414879	28	3.2	28	72	16	80	20	1	32	45	1.59
69414812--69414881	7	10.0	7	79	0	68	20	1	34	44	1.60
69414812--69414878	14	4.8	14	84	0	80	20	1	31	46	1.60
69414812--69414881	21	3.3	21	79	0	86	20	1	34	44	1.60
69415191--69415475	125	2.3	126	80	2	313	35	18	19	27	1.95
69415697--69415748	18	2.8	18	83	13	70	28	34	0	36	1.58
69417892--69417977	9	9.6	9	78	5	75	45	19	2	32	1.63
69417910--69418021	43	2.5	44	85	4	154	47	16	2	33	1.61
69418080--69418135	21	2.7	21	88	0	85	26	8	35	28	1.87
69419623--69419788	84	2.0	84	100	0	332	30	22	9	37	1.86
69421742--69421786	9	5.0	9	88	0	63	46	17	0	35	1.49
69422391--69422617	43	5.3	42	72	9	138	29	18	24	26	1.98
69425219--69425267	13	3.8	13	94	0	89	24	46	26	2	1.63
69425873--69425969	32	3.0	32	100	0	194	30	6	24	38	1.80
69427451--69427505	26	2.1	26	86	6	76	38	23	14	23	1.92
69432839--69432899	32	1.9	32	96	0	113	31	6	21	40	1.78
69434373--69434424	25	2.0	26	85	3	70	38	23	13	25	1.91
69436199--69436296	42	2.3	42	84	3	135	32	21	13	32	1.92
69443674--69443771	42	2.3	42	79	6	110	32	19	13	34	1.90
69445246--69445482	78	3.0	78	89	2	368	27	3	25	42	1.72
69448687--69448808	47	2.7	47	82	7	153	23	30	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69448687--69448849	47	3.5	44	80	11	150	22	28	19	29	1.98
69448635--69448994	94	3.8	93	75	12	297	22	28	20	28	1.98
69448773--69448991	47	4.7	45	69	13	147	22	28	19	29	1.98
69453143--69453175	13	2.6	13	90	4	50	39	0	12	48	1.40
69457681--69458040	94	3.8	94	80	9	362	22	28	20	28	1.99
69457681--69457992	47	6.7	46	72	15	178	22	29	20	28	1.98
69464349--69464388	8	4.8	9	84	12	50	67	0	0	32	0.91
69464804--69464876	27	2.7	27	84	0	101	17	19	31	31	1.95
69467666--69467802	46	3.0	46	91	0	220	25	31	8	34	1.86
69467776--69468153	47	8.1	47	92	0	580	26	28	10	34	1.90
69467819--69467940	22	5.3	22	63	26	56	26	27	11	34	1.91
69472254--69472537	62	4.6	62	94	0	498	35	5	9	49	1.59
69472487--69472515	14	2.1	14	100	0	58	51	6	0	41	1.28
69473662--69473695	14	2.4	14	90	0	50	44	11	14	29	1.81
69475174--69475227	27	2.0	27	89	7	83	33	22	7	37	1.82
69475717--69475760	3	14.7	3	80	0	52	0	43	0	56	0.99
69475701--69475757	6	10.0	6	88	5	75	0	49	0	50	1.00
69478420--69478456	14	2.6	14	91	0	56	24	5	5	64	1.36
69486598--69486641	20	2.1	21	87	4	63	68	0	4	27	1.09
69496763--69496870	26	4.2	26	93	0	189	36	24	7	32	1.83
69503771--69503878	26	4.2	26	91	0	180	36	23	7	33	1.83
69511579--69511775	97	2.0	97	98	0	376	34	7	18	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69523403--69523445	20	2.2	20	87	8	61	18	4	0	76	0.95
69528991--69529150	32	5.0	32	89	0	257	44	10	12	33	1.76
69528991--69529150	64	2.5	64	94	0	284	44	10	12	33	1.76
69533618--69533656	19	2.1	19	100	0	78	28	25	20	25	1.99
69533719--69533773	25	2.2	25	100	0	110	52	7	27	12	1.65
69536801--69536872	31	2.4	30	73	22	71	36	0	2	61	1.11
69536852--69536876	8	3.1	8	100	0	50	24	0	0	76	0.80
69539302--69539577	27	10.2	26	78	6	140	31	10	19	38	1.86
69539344--69539602	81	3.2	81	80	4	290	30	8	20	39	1.83
69539344--69539602	27	9.6	27	78	4	227	30	8	20	39	1.83
69539919--69540010	28	3.3	28	84	0	121	28	39	15	17	1.90
69542123--69542284	46	3.5	47	82	5	161	22	29	19	28	1.98
69545943--69546052	27	4.1	27	75	14	93	39	22	21	16	1.92
69545943--69546052	54	2.0	54	82	3	132	39	22	21	16	1.92
69547485--69547558	24	3.1	24	92	0	112	21	40	5	32	1.76
69554651--69554726	25	3.0	26	86	7	104	34	18	22	25	1.96
69556167--69556210	22	2.0	22	95	0	79	34	9	20	36	1.84
69567694--69567881	40	4.7	40	80	1	189	21	29	14	34	1.94
69582721--69582943	40	5.4	40	88	2	320	32	21	19	26	1.97
69582732--69582950	42	5.3	42	87	3	329	33	20	18	26	1.96
69582728--69582950	82	2.7	82	89	5	335	33	21	19	26	1.97
69593329--69593408	41	2.0	40	85	2	106	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69605617--69605767	42	3.6	41	80	9	162	31	25	17	25	1.97
69612329--69612378	25	2.0	25	100	0	100	32	24	8	36	1.84
69613958--69614000	21	2.0	21	86	9	59	58	2	2	37	1.24
69616474--69616500	4	6.8	4	100	0	54	22	0	0	77	0.76
69618539--69618851	156	2.0	158	81	10	370	44	7	10	38	1.67
69619130--69619163	18	1.9	17	94	5	59	50	5	0	44	1.26
69621804--69621845	22	1.9	22	90	0	66	30	23	21	23	1.99
69626601--69626838	50	4.7	50	84	3	307	29	25	18	26	1.98
69626612--69626844	101	2.3	100	85	3	308	30	25	18	25	1.98
69630567--69631272	69	10.2	69	79	3	499	36	21	21	20	1.95
69634850--69634884	6	5.7	6	90	6	52	85	0	11	2	0.69
69634855--69634884	13	2.3	13	100	0	60	86	0	13	0	0.57
69638704--69638884	79	2.3	81	82	7	219	25	22	27	24	2.00
69638704--69638884	40	4.6	40	81	9	201	25	22	27	24	2.00
69638753--69638907	79	2.0	79	83	7	199	26	21	27	25	1.99
69647231--69647323	47	2.0	47	97	0	177	37	16	22	23	1.93
69654094--69654148	28	2.0	28	100	0	110	29	21	5	43	1.75
69656676--69656721	23	2.0	23	95	0	83	47	28	4	19	1.68
69670818--69670852	17	2.1	17	94	0	61	62	0	5	31	1.18
69673587--69673650	21	3.0	21	68	4	58	42	9	25	23	1.84
69673572--69673682	42	2.7	41	80	9	143	45	14	22	18	1.85
69673650--69673689	21	1.9	21	89	0	62	52	17	17	12	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69677138--69677209	24	2.9	24	89	4	99	33	20	23	22	1.97
69689023--69689053	12	2.6	12	89	0	53	25	45	22	6	1.76
69698069--69698101	17	1.9	17	88	11	50	84	0	3	12	0.72
69701452--69701490	20	2.0	20	85	5	53	46	5	15	33	1.68
69702828--69703019	21	9.1	21	68	6	102	16	20	17	45	1.85
69702823--69703019	84	2.3	84	81	5	236	16	20	16	46	1.84
69702823--69703019	42	4.7	42	82	3	209	16	20	16	46	1.84
69706896--69706945	5	10.2	5	79	12	59	38	20	4	38	1.71
69706878--69706960	29	2.8	29	96	3	148	37	18	7	37	1.78
69706906--69706997	19	5.3	19	73	21	103	36	17	8	36	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325