Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  303  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96233689--96233720
5
6.6
5
92
7
57
18
0
0
81
0.70
96233689--96233719
9
3.3
9
91
8
53
19
0
0
80
0.71
96239848--96239920
35
2.1
35
100
0
146
35
5
19
39
1.75
96241757--96241793
5
7.6
5
93
6
67
18
0
0
81
0.70
96247540--96247773
117
2.0
117
98
1
452
40
2
17
40
1.63
96250900--96250957
30
1.9
31
92
3
100
24
5
20
50
1.69
96252528--96252590
6
10.7
6
98
1
119
17
0
33
49
1.47
96253330--96253430
51
2.0
51
100
0
202
31
13
9
44
1.77
96261896--96261938
18
2.4
17
77
11
50
32
2
2
62
1.20
96264198--96264276
37
2.1
37
88
0
113
26
30
18
24
1.98
96264398--96264856
47
9.7
47
95
1
758
29
29
8
32
1.87
96264398--96264835
239
1.8
237
94
0
777
29
29
8
32
1.87
96271464--96271511
25
2.0
24
95
4
87
25
8
6
60
1.49
96271464--96271511
24
2.0
25
91
4
80
25
8
6
60
1.49
96271465--96271518
25
2.2
25
90
3
83
24
5
5
64
1.36
96271508--96271603
36
2.7
36
73
15
92
33
3
5
58
1.36
96286513--96286545
5
6.6
5
100
0
66
18
42
0
39
1.50
96298796--96298843
24
2.0
24
95
0
87
58
10
10
20
1.60
96298854--96298912
26
2.3
25
80
8
64
62
1
10
25
1.36
96299777--96299822
25
1.9
24
91
8
76
34
2
0
63
1.07
96299777--96299908
23
5.7
24
76
7
94
35
4
3
56
1.35
96299869--96299980
29
4.0
27
73
17
88
30
6
4
58
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96299925--96299991
25
2.9
23
78
10
73
29
5
5
58
1.46
96311147--96311179
12
2.7
13
81
18
52
78
0
21
0
0.75
96312193--96312236
13
3.4
13
84
9
63
13
9
6
70
1.33
96312105--96312499
99
4.1
100
82
10
453
25
16
18
39
1.91
96312425--96312975
73
7.6
72
87
5
742
31
16
20
31
1.94
96313075--96313107
14
2.4
14
94
0
57
18
12
6
63
1.48
96312911--96313450
180
3.0
175
80
9
574
27
17
17
37
1.93
96312911--96313487
91
6.5
87
81
8
505
27
16
18
37
1.92
96314130--96314228
30
3.3
30
89
0
153
25
48
6
20
1.72
96314700--96314831
22
5.7
23
64
16
67
34
5
3
57
1.37
96314842--96314907
25
2.9
22
78
10
69
30
6
6
57
1.47
96314773--96314920
77
1.9
81
81
5
187
30
7
4
57
1.47
96314786--96314900
25
4.5
25
71
16
74
29
6
5
58
1.46
96314963--96315018
25
2.3
24
79
14
62
37
16
3
42
1.65
96316631--96316657
5
5.4
5
100
0
54
81
0
0
18
0.69
96318653--96318685
16
2.1
16
94
0
57
51
3
0
45
1.16
96318664--96318707
22
2.0
22
86
0
61
52
0
0
47
1.00
96318734--96318767
15
2.1
16
89
10
52
58
0
0
41
0.98
96318800--96318856
15
3.5
15
71
17
51
49
0
1
49
1.11
96318802--96318838
19
1.9
19
88
0
56
48
0
0
51
1.00
96321641--96321671
2
15.5
2
93
0
53
54
0
45
0
0.99
96326464--96326540
40
1.9
41
84
12
106
54
1
5
38
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96327719--96327767
24
2.0
25
84
11
66
36
14
2
46
1.56
96328981--96329023
13
3.1
14
84
12
54
60
0
0
39
0.97
96332603--96332637
16
2.2
16
100
0
70
31
17
5
45
1.71
96333657--96333717
31
2.0
31
93
0
104
44
3
1
50
1.28
96337228--96337270
21
2.0
21
100
0
86
27
27
13
30
1.95
96350833--96351099
145
1.8
145
82
1
347
39
8
9
41
1.69
96351338--96351371
17
2.1
16
94
5
59
50
11
5
32
1.63
96353933--96353996
30
2.1
31
88
5
96
42
1
4
51
1.32
96353934--96354007
29
2.5
29
84
8
87
43
1
4
51
1.29
96361608--96361697
21
4.5
21
75
19
86
50
3
2
44
1.31
96361605--96361689
17
4.6
17
75
23
82
50
2
2
44
1.27
96364296--96364322
8
3.4
8
100
0
54
74
0
0
25
0.83
96365059--96365116
19
3.2
19
79
15
54
6
17
3
72
1.21
96379148--96379191
23
2.0
21
86
8
61
31
2
0
65
1.05
96379151--96379191
21
2.1
19
86
9
55
34
2
0
63
1.08
96379158--96379197
21
1.9
21
84
0
53
37
2
0
60
1.11
96379165--96379232
31
2.2
29
78
19
75
39
0
1
58
1.07
96382290--96382334
12
3.8
12
81
0
54
46
8
17
26
1.78
96382253--96382347
36
2.6
36
81
6
113
43
13
17
25
1.86
96382289--96382348
24
2.5
24
80
0
75
43
13
18
25
1.86
96382317--96382373
24
2.4
25
82
11
66
40
19
21
19
1.92
96382330--96382407
24
3.2
24
74
3
68
46
21
14
17
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96383762--96383787
3
8.7
3
100
0
52
30
0
0
69
0.89
96387638--96387761
45
2.7
46
85
3
153
31
13
14
40
1.85
96391766--96391854
25
3.5
26
73
13
96
44
2
1
51
1.21
96400786--96400816
15
2.1
15
93
0
53
38
16
12
32
1.86
96415537--96415585
25
1.9
26
84
12
66
71
2
16
10
1.22
96417102--96417199
21
4.4
23
87
8
141
13
22
26
37
1.91
96417092--96417199
44
2.5
42
84
6
135
14
22
25
37
1.93
96423374--96423422
25
1.9
26
84
12
66
71
2
16
10
1.22
96424943--96425016
21
3.5
21
81
7
78
13
21
25
39
1.90
96430031--96430156
8
15.4
8
70
18
55
34
2
1
61
1.18
96430057--96430111
18
3.1
18
82
7
60
34
1
1
61
1.17
96430019--96430138
43
2.7
45
85
10
149
33
3
1
61
1.22
96430074--96430156
26
3.1
24
73
20
67
33
2
1
62
1.16
96430195--96430242
16
3.0
15
75
16
51
37
0
4
58
1.18
96437570--96437629
22
2.8
21
80
7
66
40
0
0
60
0.97
96437684--96437737
27
2.0
27
85
7
74
51
0
1
46
1.11
96437891--96437957
28
2.4
26
79
16
73
40
0
5
53
1.25
96440945--96441084
46
3.0
47
86
2
178
21
23
14
40
1.90
96444478--96444606
42
3.0
42
89
2
204
28
13
26
31
1.94
96444486--96444606
43
2.9
42
88
2
188
28
14
26
29
1.95
96444784--96444808
11
2.3
11
100
0
50
20
16
28
36
1.93
96446634--96446699
23
3.0
23
77
6
82
42
24
18
15
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96451857--96451940
26
3.2
26
96
0
150
33
4
25
36
1.77
96457610--96457692
26
3.2
25
94
3
139
33
4
25
36
1.77
96461443--96461479
16
2.3
16
86
13
58
40
0
0
59
0.97
96461490--96461548
20
3.1
20
74
18
63
54
0
1
44
1.10
96469538--96469752
24
9.0
24
94
0
304
17
31
30
20
1.96
96473128--96473176
25
2.0
25
83
0
62
51
4
2
42
1.32
96490605--96490659
16
3.4
16
87
5
76
40
5
25
29
1.78
96490641--96490733
44
2.1
46
88
8
138
33
4
25
36
1.76
96493843--96493922
10
7.8
10
79
10
90
68
2
8
20
1.28
96494545--96494577
8
4.1
8
85
14
50
0
12
0
87
0.53
96494544--96494574
16
1.9
16
100
0
62
0
9
0
90
0.46
96494548--96494600
17
3.1
17
76
15
56
0
18
0
81
0.70
96496208--96496287
26
3.1
25
71
18
74
28
2
2
66
1.18
96496928--96496955
2
14.0
2
100
0
56
50
50
0
0
1.00
96497189--96497276
39
2.3
38
84
5
113
21
27
21
29
1.99
96499694--96500074
26
14.3
26
71
12
204
29
4
4
60
1.37
96500130--96500187
22
2.5
25
81
10
61
27
3
5
63
1.31
96502639--96502770
39
3.4
39
86
0
201
36
12
10
40
1.78
96502699--96502762
18
3.4
18
73
12
65
39
14
4
42
1.66
96502662--96502765
18
5.4
18
68
13
64
37
12
9
40
1.76
96502917--96503008
44
2.1
44
89
0
139
35
23
19
20
1.95
96503796--96503821
13
2.0
13
100
0
52
0
15
0
84
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96504258--96504309
22
2.3
23
90
6
79
50
3
0
46
1.20
96504416--96504472
3
19.3
3
76
16
57
61
3
0
35
1.13
96505049--96505101
6
8.0
7
84
16
53
75
0
1
22
0.90
96505049--96505093
23
2.0
23
86
8
65
75
0
2
22
0.91
96505047--96505101
16
3.3
16
76
23
60
76
0
1
21
0.88
96509201--96509282
21
3.8
21
93
3
128
32
28
25
13
1.93
96509666--96509723
15
3.8
15
83
2
80
51
10
0
37
1.36
96510993--96511019
5
5.4
5
100
0
54
59
0
0
40
0.98
96510983--96511082
51
2.0
51
83
15
127
54
5
2
39
1.34
96516222--96516260
18
2.2
18
85
0
51
61
2
23
12
1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325