Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  129  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40295788--40295831
5
8.6
5
85
14
63
20
0
0
79
0.73
40295788--40295831
9
4.3
10
86
13
63
20
0
0
79
0.73
40295782--40295836
26
2.1
26
86
6
76
18
1
0
80
0.81
40305613--40305660
25
1.9
25
95
0
87
35
18
22
22
1.96
40311704--40312246
133
4.1
133
78
4
448
33
17
19
29
1.94
40311704--40312532
44
18.5
44
71
7
371
32
17
20
29
1.95
40312319--40312488
89
1.9
88
82
1
214
30
20
22
26
1.99
40314283--40314337
3
18.3
3
77
7
58
34
3
1
60
1.25
40314292--40314333
18
2.3
18
91
0
66
38
4
0
57
1.20
40314874--40314908
18
1.9
18
100
0
70
17
20
11
51
1.75
40318093--40318141
25
2.0
25
87
0
71
36
8
18
36
1.81
40328069--40328156
28
3.1
27
76
9
77
62
3
1
32
1.19
40331014--40331080
31
2.2
31
89
2
100
43
8
10
37
1.71
40335248--40335300
26
2.0
25
85
7
70
22
1
0
75
0.90
40335254--40335302
19
2.8
16
77
22
53
18
2
0
79
0.83
40338397--40338490
45
2.1
45
86
4
127
43
9
19
27
1.82
40338575--40338641
34
2.0
34
82
5
82
50
13
8
26
1.71
40338892--40338967
27
2.8
27
83
2
98
61
5
10
22
1.48
40338900--40338993
27
3.5
28
80
8
88
62
4
9
23
1.43
40342229--40342272
17
2.7
16
86
10
54
25
9
6
59
1.53
40342786--40343318
132
4.0
132
74
7
414
29
18
17
34
1.94
40344237--40344397
50
3.2
49
81
4
180
24
25
34
15
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40358973--40359073
48
2.1
49
98
1
195
46
4
15
32
1.68
40360526--40360698
92
1.9
91
85
7
242
31
20
23
24
1.98
40362708--40362880
92
1.9
90
83
4
222
39
19
8
32
1.81
40362901--40362960
19
3.2
19
85
4
77
56
0
5
38
1.21
40362895--40362980
36
2.3
38
78
7
97
58
0
4
37
1.19
40364727--40364849
38
3.1
39
85
5
115
39
15
14
30
1.87
40364752--40364879
38
3.4
38
88
0
166
36
14
17
32
1.89
40366509--40366543
18
1.9
18
94
0
61
20
0
25
54
1.45
40367174--40367225
17
3.1
17
78
10
63
57
0
1
40
1.10
40367735--40367777
22
2.0
22
81
9
52
34
2
6
55
1.39
40368677--40368723
3
15.7
3
100
0
94
31
0
0
68
0.90
40369020--40369063
21
2.0
22
82
8
54
34
6
11
47
1.66
40371490--40371532
21
2.0
21
86
8
61
37
6
0
55
1.27
40375891--40375924
16
2.1
17
88
5
52
38
0
0
61
0.96
40376052--40376111
22
2.6
22
75
15
59
56
0
1
41
1.09
40383937--40383979
18
2.4
18
92
0
68
41
0
0
58
0.98
40386119--40386192
22
3.6
21
77
13
64
41
16
6
35
1.74
40386155--40386245
19
4.9
19
89
8
152
37
14
10
37
1.81
40386157--40386245
35
2.4
37
88
9
137
38
13
11
37
1.81
40386365--40386403
21
1.9
20
84
5
51
10
2
15
71
1.23
40386609--40386824
45
4.8
45
78
8
242
25
29
16
28
1.97
40386610--40386824
89
2.4
91
85
6
269
25
29
16
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40386764--40387058
78
3.8
78
91
2
477
24
24
19
32
1.98
40390566--40390621
28
2.0
28
100
0
112
28
14
14
42
1.84
40398906--40398930
13
1.9
13
100
0
50
56
20
8
16
1.65
40399633--40399666
17
2.1
17
88
5
52
70
0
0
29
0.87
40399920--40399995
22
3.7
21
76
15
68
40
17
6
35
1.75
40399949--40400046
35
2.7
37
87
12
150
35
16
10
37
1.82
40399956--40400046
19
4.9
19
92
8
161
36
15
10
37
1.83
40403644--40403699
23
2.4
24
76
8
62
17
16
26
39
1.91
40412745--40412784
14
2.8
15
88
7
57
37
5
5
52
1.45
40421037--40421098
32
1.9
32
83
6
81
22
1
4
70
1.14
40421053--40421106
22
2.4
23
81
6
58
24
0
3
72
1.01
40421065--40421093
14
2.0
15
93
6
51
24
0
0
75
0.80
40421063--40421107
22
2.0
23
86
4
65
24
0
2
73
0.95
40421478--40421527
19
2.7
18
81
12
57
66
2
2
30
1.14
40421876--40421908
16
2.1
17
88
11
52
81
0
0
18
0.68
40427413--40427451
19
2.1
19
100
0
78
33
10
15
41
1.81
40437527--40437660
17
7.9
17
78
9
148
44
12
13
29
1.81
40437527--40437659
34
3.9
33
84
5
169
44
12
12
30
1.80
40437988--40438046
8
7.4
8
84
11
68
0
20
0
79
0.73
40437990--40438042
15
3.4
15
89
5
79
0
18
0
81
0.70
40437988--40438059
23
3.1
23
84
6
83
0
20
0
79
0.74
40438337--40438395
3
18.0
3
86
13
73
0
33
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40438327--40438395
10
7.3
10
82
11
74
0
30
0
69
0.89
40438337--40438392
13
4.5
13
80
17
64
0
33
0
66
0.92
40438765--40438867
30
3.4
30
81
2
116
45
2
21
30
1.66
40438863--40438897
14
2.4
15
90
4
54
25
0
2
71
1.00
40439139--40439337
106
1.9
106
90
3
319
33
18
16
31
1.93
40439139--40439356
54
4.1
54
84
8
293
36
16
16
29
1.92
40439336--40439369
14
2.5
14
90
4
52
58
2
17
20
1.51
40439448--40439697
85
2.8
87
78
10
285
36
18
18
26
1.94
40439441--40439704
91
3.0
88
79
10
297
37
17
18
26
1.92
40439301--40439697
185
2.2
178
84
8
500
35
17
17
28
1.93
40439627--40439945
123
2.6
123
93
1
539
36
21
14
27
1.93
40439785--40440337
195
2.8
193
94
4
975
34
20
14
30
1.92
40439627--40440654
320
3.2
313
85
7
1174
35
20
14
29
1.92
40440043--40440202
70
2.3
68
80
6
169
32
23
13
30
1.93
40440104--40440460
123
2.9
127
90
4
541
34
21
14
30
1.92
40440549--40440716
70
2.4
68
80
5
176
33
23
13
29
1.93
40440227--40440723
194
2.6
193
93
1
834
34
21
13
30
1.92
40439662--40440723
514
2.1
510
95
1
1921
35
20
13
29
1.92
40452440--40452492
20
2.6
20
77
11
63
41
7
9
41
1.66
40452471--40452604
17
7.9
17
78
9
148
44
12
13
29
1.81
40452471--40452603
34
3.9
33
84
5
169
44
12
12
30
1.80
40452941--40452983
7
6.0
7
91
2
68
0
18
0
81
0.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40453277--40453339
3
19.0
3
87
12
72
0
33
0
66
0.92
40453276--40453338
19
3.1
20
88
8
92
0
31
0
68
0.90
40453284--40453339
22
2.4
23
88
8
78
0
33
0
66
0.92
40453276--40453339
25
2.7
24
86
11
87
0
32
0
67
0.91
40453708--40453809
30
3.4
30
82
2
125
45
3
21
29
1.70
40455956--40456025
33
2.1
33
100
0
140
31
2
8
57
1.44
40456856--40456974
19
6.4
20
67
22
57
56
2
1
39
1.23
40459553--40459631
37
2.1
37
90
0
122
25
31
18
24
1.98
40459750--40459972
47
4.7
47
89
1
313
27
30
8
33
1.87
40462059--40462096
19
2.0
20
89
5
60
36
0
13
50
1.42
40465480--40465604
47
2.7
47
83
0
151
33
27
15
24
1.95
40469563--40469610
23
2.1
23
84
7
62
18
4
4
72
1.17
40474046--40474116
27
2.7
27
80
6
74
36
15
23
23
1.94
40474050--40474125
26
2.8
26
80
4
71
32
15
23
27
1.95
40474269--40474353
35
2.4
35
75
7
109
29
20
17
32
1.95
40478495--40478519
9
2.8
9
100
0
50
56
0
0
44
0.99
40489951--40489975
6
4.2
6
100
0
50
16
0
0
84
0.63
40490019--40490047
15
2.0
15
93
6
51
0
17
0
82
0.66
40490566--40490693
63
2.0
63
83
3
159
31
20
23
25
1.98
40490572--40490709
63
2.2
63
76
3
143
33
21
22
23
1.97
40512492--40512560
34
2.0
35
85
2
95
24
26
20
28
1.99
40513020--40513053
17
1.9
17
88
5
50
17
41
23
17
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40516357--40516440
20
4.2
20
75
6
89
14
27
16
41
1.87
40516377--40516473
40
2.4
40
87
3
133
16
29
16
37
1.91
40516366--40516451
20
4.3
20
72
8
77
13
31
16
38
1.88
40516352--40516527
20
9.0
20
62
15
55
14
28
19
38
1.90
40520408--40520516
32
3.2
32
64
22
78
35
7
11
44
1.69
40520388--40520528
70
2.0
70
97
0
264
36
8
12
43
1.72
40524523--40524573
18
2.9
18
75
13
61
17
0
21
60
1.36
40526223--40526265
19
2.3
18
88
4
59
37
2
39
20
1.66
40533532--40533568
18
2.0
19
89
5
58
10
37
0
51
1.37
40536492--40536880
47
8.3
47
92
0
616
28
29
8
33
1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325