Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  100  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32446375--32446419
13
3.7
13
82
17
69
26
0
24
48
1.51
32446374--32446420
23
2.0
23
100
0
94
25
0
27
46
1.53
32448020--32448097
13
6.6
13
75
20
82
34
52
1
11
1.46
32448023--32448097
35
2.1
35
95
0
132
34
53
1
10
1.44
32448459--32448500
19
2.3
18
87
4
57
26
2
2
69
1.13
32448485--32448566
33
2.3
39
83
12
104
34
13
0
52
1.41
32448512--32448596
23
3.6
23
70
9
64
29
9
2
58
1.42
32457930--32458470
206
2.6
206
95
0
949
29
18
23
28
1.98
32458986--32459092
22
4.7
22
67
17
83
39
49
0
11
1.39
32459000--32459105
13
8.8
13
71
15
93
39
50
0
10
1.37
32458982--32459116
35
3.9
35
95
0
225
38
49
0
11
1.40
32459479--32459615
3
45.7
3
70
12
50
30
9
2
57
1.42
32459479--32459521
19
2.3
18
88
4
59
27
2
2
67
1.15
32459506--32459590
33
2.3
39
82
11
110
34
12
0
52
1.40
32462043--32462346
47
6.5
46
74
9
249
28
20
28
22
1.99
32462045--32462346
140
2.2
137
81
11
346
28
20
28
22
1.99
32463893--32463946
24
2.3
24
78
12
58
53
9
5
31
1.56
32467455--32467543
24
3.9
22
71
18
56
24
4
3
67
1.25
32467501--32467549
20
2.5
20
80
9
57
24
0
6
69
1.11
32478586--32478634
1
49.0
1
79
0
53
89
0
0
10
0.48
32478585--32478633
10
5.0
10
80
14
66
87
0
0
12
0.54
32478586--32478635
11
4.7
11
85
7
68
88
0
0
12
0.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32478589--32478634
18
2.6
18
93
3
76
89
0
0
10
0.50
32479474--32479822
118
2.9
119
92
1
567
32
16
19
31
1.94
32479648--32480028
202
1.9
202
89
1
593
34
17
19
29
1.95
32479833--32480147
119
2.6
118
88
2
432
33
17
20
29
1.95
32479530--32480232
321
2.2
320
92
1
1158
34
16
19
29
1.94
32480071--32480252
83
2.2
82
85
2
240
35
14
19
29
1.92
32481977--32482025
20
2.5
20
80
9
57
24
0
6
69
1.11
32482040--32482073
15
2.4
14
90
5
50
38
0
2
58
1.13
32484409--32484481
19
3.9
19
92
7
132
38
10
15
35
1.82
32484409--32484504
19
4.8
22
87
10
88
37
9
15
37
1.80
32484769--32484803
18
2.0
17
88
5
52
31
0
0
68
0.90
32492911--32493007
20
4.8
20
70
22
60
35
3
1
60
1.19
32492929--32493024
3
32.0
3
72
19
76
32
2
1
64
1.12
32492914--32493113
41
5.3
36
70
18
117
32
4
2
61
1.26
32492947--32493030
33
2.5
33
84
7
100
33
2
0
64
1.07
32492909--32493040
32
4.0
31
72
19
99
32
3
1
62
1.19
32492909--32493098
97
1.9
99
81
10
230
32
3
2
62
1.25
32492983--32493263
15
19.0
14
65
20
69
31
4
1
61
1.26
32493328--32493391
18
3.5
19
70
18
55
29
0
6
64
1.18
32493674--32493738
33
2.0
33
96
0
121
26
6
7
60
1.48
32495924--32495957
13
2.4
15
90
9
54
76
5
2
14
1.09
32496103--32496154
22
2.5
21
79
14
54
44
1
3
50
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32496186--32496238
23
2.4
22
77
3
61
64
0
5
30
1.17
32496188--32496320
28
4.8
28
72
17
93
59
0
5
34
1.25
32496196--32496320
14
9.9
14
64
26
55
58
0
5
35
1.27
32496249--32496305
25
2.3
25
79
14
64
57
1
5
35
1.31
32496233--32496318
32
2.7
32
72
15
79
56
1
5
36
1.31
32496224--32496337
16
7.3
16
69
16
69
58
0
6
34
1.29
32497910--32498594
44
15.6
44
86
0
895
29
24
14
31
1.95
32509355--32509400
18
2.6
18
75
21
51
63
8
6
21
1.46
32509434--32509465
12
2.4
14
90
10
50
75
6
3
15
1.14
32509719--32509772
28
2.0
28
81
3
65
61
0
7
31
1.24
32509794--32509840
16
2.6
18
87
12
62
63
0
4
31
1.13
32514918--32515009
33
2.8
33
88
1
130
30
18
23
27
1.98
32525802--32525884
33
2.5
33
86
5
105
33
15
21
28
1.94
32527028--32527137
39
2.8
40
79
5
127
35
4
18
41
1.71
32527994--32528058
33
2.0
33
100
0
130
27
15
15
41
1.87
32530331--32530453
45
2.7
47
79
12
148
29
20
13
36
1.91
32530987--32531016
11
2.8
11
95
5
53
43
6
10
40
1.64
32535033--32535072
15
2.7
15
92
0
62
30
15
12
42
1.83
32537647--32537719
22
3.4
21
69
17
60
31
6
17
43
1.75
32537633--32537715
43
1.9
43
87
0
121
27
8
20
43
1.81
32537574--32537701
68
1.9
67
85
4
179
26
8
21
42
1.82
32540155--32540192
19
2.0
19
94
0
67
28
5
31
34
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32540940--32540973
18
1.9
17
88
5
50
29
0
0
70
0.87
32549126--32550368
220
5.7
220
91
1
1896
32
18
22
26
1.97
32549903--32550064
89
1.8
87
84
2
216
30
19
23
27
1.98
32550309--32550681
78
4.8
78
93
2
642
31
18
24
24
1.98
32550712--32550875
89
1.8
89
92
2
276
31
13
29
26
1.94
32550621--32550894
45
6.1
45
78
7
261
31
15
27
25
1.96
32551246--32551343
35
2.7
37
87
12
150
37
10
16
35
1.82
32551246--32551336
19
4.9
19
92
8
161
37
10
15
36
1.83
32551246--32551359
19
5.8
22
87
10
96
36
9
15
37
1.81
32551626--32551660
18
2.0
17
88
5
52
31
0
0
68
0.90
32553402--32553442
22
1.9
22
90
5
66
36
0
4
58
1.20
32557859--32557919
16
3.8
16
85
12
63
39
0
0
60
0.97
32557854--32557921
25
2.7
23
84
13
66
36
0
0
63
0.95
32557875--32558090
3
70.3
3
67
23
87
34
4
1
60
1.25
32557908--32557960
20
2.7
20
80
16
65
33
7
1
56
1.38
32557857--32558058
23
9.0
22
71
23
97
35
2
1
59
1.21
32557948--32558021
29
2.4
29
86
8
94
35
1
1
62
1.12
32557949--32558040
47
2.0
47
83
12
120
34
1
1
63
1.09
32557854--32558083
73
3.0
74
73
17
188
34
3
1
60
1.22
32557952--32558056
54
1.9
55
81
16
130
34
1
1
61
1.18
32557884--32558062
55
3.3
53
75
18
122
34
3
1
60
1.23
32558361--32558409
26
1.9
25
83
4
62
36
4
0
59
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32562126--32562175
14
3.5
15
80
20
54
24
22
10
44
1.83
32565151--32565208
28
2.1
28
100
0
116
39
6
25
27
1.81
32565371--32565426
26
2.2
26
96
0
103
30
7
25
37
1.82
32567048--32567185
54
2.5
53
89
2
204
18
23
22
36
1.95
32567047--32567185
27
5.1
27
82
6
167
17
23
23
35
1.95
32567058--32567203
27
5.4
26
73
16
102
19
23
19
36
1.95
32571688--32571774
27
3.2
27
87
6
115
16
24
24
35
1.94
32571707--32571792
27
3.2
26
80
12
95
18
24
19
37
1.94
32578112--32578878
209
3.7
210
89
2
1050
30
19
20
29
1.97
32580027--32580196
19
8.8
19
66
24
74
33
2
1
61
1.21
32580167--32580216
19
2.7
19
87
9
68
36
2
2
60
1.20
32580108--32580238
18
6.7
20
70
25
84
33
3
2
61
1.24
32580502--32580622
62
2.0
61
79
15
133
36
4
0
57
1.26
32583129--32583167
14
2.6
16
84
12
55
0
15
7
76
0.99
32583970--32584004
18
1.9
18
88
0
52
31
0
11
57
1.34
32589336--32589375
21
1.9
21
85
10
55
77
7
10
5
1.11
32591053--32591183
64
2.0
64
91
2
210
31
16
12
39
1.86
32591391--32591949
176
3.2
175
87
1
785
31
17
23
27
1.97
32592062--32592416
181
2.0
175
81
7
419
29
18
24
28
1.98
32593841--32593889
18
2.7
18
80
0
62
30
0
8
61
1.25
32598965--32598992
12
2.3
12
100
0
56
14
21
42
21
1.88
32600073--32600160
43
2.0
43
100
0
176
30
22
17
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32606491--32606517
13
2.1
13
100
0
54
22
29
18
29
1.97
32614367--32614392
10
2.6
10
100
0
52
34
7
0
57
1.27
32628397--32628435
16
2.4
16
82
4
51
30
7
28
33
1.85
32632892--32632994
38
2.7
37
85
4
125
30
15
19
34
1.93
32633748--32633792
17
2.8
16
86
3
63
60
0
4
35
1.17
32636041--32636148
53
2.0
53
100
0
216
36
9
12
41
1.76
32638180--32638209
7
4.3
7
95
0
51
36
0
3
60
1.14
32645746--32645959
44
4.8
43
71
15
150
35
19
18
27
1.95
32645713--32646014
138
2.2
136
84
5
367
33
18
20
28
1.96
32645951--32646064
50
2.3
50
83
6
133
28
18
24
28
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325