Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  121  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37731495--37731624
48
2.7
48
90
0
206
30
27
16
24
1.97
37741464--37741493
13
2.2
14
94
5
53
53
13
0
33
1.40
37746150--37746293
66
2.1
68
86
7
197
31
15
26
27
1.96
37746196--37746431
33
7.1
32
67
10
107
32
16
22
28
1.96
37746204--37746448
101
2.4
100
86
4
341
33
16
22
27
1.95
37754827--37754859
13
2.6
13
90
4
50
75
6
0
18
1.00
37755746--37755773
3
9.3
3
100
0
56
32
35
0
32
1.58
37757822--37757846
13
1.9
13
100
0
50
64
4
0
32
1.12
37758261--37758436
43
4.2
42
76
8
169
28
29
17
24
1.97
37758261--37758401
41
3.4
42
81
4
169
28
29
18
24
1.98
37758552--37758580
11
2.7
11
94
5
51
41
10
0
48
1.37
37760946--37760980
16
2.2
16
89
0
52
40
20
14
25
1.90
37763372--37763427
18
3.1
18
82
7
60
33
0
37
28
1.58
37763419--37763502
44
1.9
44
85
4
116
22
5
36
34
1.79
37763884--37763947
7
9.0
7
84
3
56
34
39
1
25
1.65
37763928--37764005
14
5.5
14
71
8
50
42
34
1
21
1.61
37763959--37764029
7
9.9
7
69
6
52
49
28
0
22
1.50
37763963--37764000
15
2.6
15
83
4
51
44
39
0
15
1.47
37763931--37764005
22
3.5
21
73
7
62
44
33
1
21
1.61
37764026--37764098
7
10.3
7
88
2
74
32
46
0
20
1.51
37764026--37764119
21
4.4
21
73
16
68
34
43
0
22
1.53
37764090--37764149
14
4.1
15
73
16
54
45
31
0
23
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37764103--37764179
29
2.7
30
78
17
83
48
29
0
22
1.51
37764083--37764149
22
3.1
20
74
20
55
44
32
0
22
1.53
37764488--37764633
40
3.7
39
78
5
150
28
18
20
32
1.96
37764697--37764793
40
2.4
40
82
3
106
24
24
23
26
2.00
37764732--37764808
40
1.9
40
89
0
118
25
22
22
29
1.99
37766097--37766135
3
13.0
3
83
0
51
64
5
0
30
1.15
37766217--37766279
11
6.1
10
78
14
58
74
1
4
19
1.08
37766354--37766384
3
10.3
3
92
0
53
61
0
3
35
1.12
37767961--37768002
3
14.0
3
84
0
57
64
4
0
30
1.14
37768084--37768146
11
6.1
10
78
14
58
74
1
4
19
1.08
37770659--37770699
20
2.0
20
90
0
64
26
9
31
31
1.89
37773426--37773584
27
5.9
27
80
11
175
34
22
24
18
1.96
37773444--37773587
54
2.7
54
92
2
236
34
24
24
16
1.95
37775182--37775237
26
2.2
26
96
0
103
35
25
7
32
1.83
37775984--37776018
19
1.9
17
88
11
52
14
0
31
54
1.40
37776041--37776081
16
2.5
17
77
22
52
58
0
0
41
0.98
37776187--37776572
126
3.1
125
84
4
481
36
15
18
29
1.92
37779548--37779680
56
2.4
56
93
0
230
51
6
3
38
1.47
37780077--37780118
18
2.3
18
91
0
66
42
2
28
26
1.67
37780735--37780771
7
5.3
7
93
0
65
59
10
0
29
1.31
37781719--37781817
48
2.0
49
88
1
146
56
3
7
33
1.42
37789691--37790247
207
2.7
206
92
0
907
31
18
22
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37794342--37794832
87
5.6
87
94
0
829
18
25
21
34
1.96
37794342--37794972
261
2.3
268
87
7
900
18
25
22
34
1.96
37794727--37794945
110
2.0
109
96
0
402
17
26
22
33
1.96
37794837--37794974
44
3.2
44
71
10
147
17
26
21
34
1.95
37795685--37795713
14
2.1
14
100
0
58
55
13
24
6
1.63
37803033--37803075
19
2.2
20
87
4
61
46
6
18
27
1.75
37809610--37809661
5
10.4
5
76
15
54
34
1
0
63
1.06
37809610--37809734
24
5.2
24
73
19
86
34
5
0
60
1.20
37809791--37809868
30
2.6
32
80
13
94
30
8
1
58
1.37
37816387--37816600
101
2.1
102
92
0
349
32
13
24
29
1.93
37816382--37816597
51
4.3
51
91
1
335
31
13
24
30
1.94
37823657--37823697
21
2.0
21
90
0
64
29
21
29
19
1.98
37827043--37827069
14
1.9
14
100
0
54
37
18
22
22
1.95
37829412--37829494
40
2.1
40
84
4
105
36
21
18
24
1.95
37831507--37831555
14
3.8
13
76
15
57
53
0
2
44
1.12
37831499--37831552
26
2.1
24
83
13
63
53
0
3
42
1.18
37831836--37831979
12
12.8
12
67
27
59
62
0
4
32
1.19
37831833--37831994
20
7.8
20
71
19
102
61
0
4
33
1.20
37831835--37832000
45
3.8
41
72
15
109
61
0
4
33
1.20
37831931--37832006
38
2.1
37
82
9
93
61
0
3
34
1.14
37839162--37839186
12
2.1
12
100
0
50
92
0
8
0
0.40
37844120--37844158
16
2.4
16
84
12
53
61
2
0
35
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37844352--37844400
24
2.0
24
84
8
62
30
4
0
65
1.11
37844350--37844391
18
2.4
17
84
4
57
30
4
0
64
1.14
37852658--37852810
43
3.6
43
77
8
150
28
15
24
31
1.96
37857008--37857129
42
2.9
42
81
4
147
28
17
24
29
1.97
37857871--37857963
47
2.0
46
93
2
159
30
11
25
32
1.92
37877540--37877582
18
2.5
17
84
3
50
20
25
37
16
1.93
37884863--37884914
27
1.9
27
84
7
70
23
23
1
51
1.58
37885111--37885208
37
2.6
37
93
0
160
32
26
18
22
1.97
37887725--37887783
29
2.0
29
96
0
109
40
20
11
27
1.87
37887707--37888123
207
2.0
207
96
0
762
43
13
13
29
1.82
37890478--37890676
40
5.0
40
80
1
202
45
26
16
12
1.82
37892131--37892217
21
4.0
23
80
10
92
37
25
21
14
1.92
37900010--37900096
21
4.0
23
80
10
92
37
25
21
14
1.92
37904071--37904228
85
1.9
84
83
1
208
31
20
20
27
1.98
37904070--37904233
43
3.9
42
79
7
170
30
21
21
26
1.98
37904070--37904255
43
4.4
42
78
8
144
30
23
19
26
1.98
37904627--37904674
21
2.3
21
78
7
53
2
47
16
33
1.58
37910211--37910269
9
6.6
9
86
0
82
28
1
23
45
1.63
37910212--37910269
27
2.1
27
93
0
98
29
1
22
46
1.62
37910268--37910701
241
1.8
241
96
0
814
33
15
17
32
1.91
37912752--37912816
25
2.6
25
85
0
85
32
15
40
12
1.84
37912749--37912822
25
3.0
24
76
7
76
32
14
39
13
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37915086--37915142
22
2.7
20
77
22
62
33
1
1
63
1.15
37915488--37915546
22
2.7
22
79
7
68
38
42
0
18
1.51
37915567--37915606
7
5.6
7
85
5
53
52
25
0
22
1.47
37915567--37915608
22
1.9
22
95
0
75
52
26
0
21
1.47
37915567--37915606
15
2.8
14
88
7
62
52
25
0
22
1.47
37915896--37915945
24
2.1
24
96
0
91
42
4
2
52
1.31
37916467--37916502
16
2.2
16
90
0
54
22
2
25
50
1.63
37916515--37916787
41
6.8
41
85
6
371
20
24
21
33
1.97
37927815--37928309
47
10.6
47
93
2
827
33
8
29
28
1.86
37927815--37928309
187
2.7
189
94
2
842
33
8
29
28
1.86
37972796--37972876
26
3.2
26
94
5
139
35
25
7
30
1.84
37979808--37979916
26
4.2
26
93
0
191
35
23
7
33
1.83
37980552--37980592
11
3.7
11
80
0
55
19
14
9
56
1.66
37982217--37982241
13
1.9
13
100
0
50
48
8
4
40
1.51
37982420--37982473
20
2.8
18
81
13
63
46
0
0
53
1.00
37990325--37990349
5
5.0
5
100
0
50
40
20
20
20
1.92
37990719--37990773
22
2.5
23
77
14
62
60
0
5
34
1.20
37994299--37994424
63
2.0
63
90
0
198
31
13
25
29
1.94
37995653--37995713
20
3.1
20
83
4
79
32
18
26
22
1.97
38003539--38003575
19
1.9
19
100
0
74
32
21
10
35
1.88
38003570--38003624
18
3.0
18
81
2
65
36
12
14
36
1.84
38004067--38004124
30
2.0
28
83
9
73
3
20
5
70
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38006058--38006403
124
2.8
124
88
0
494
23
18
24
34
1.96
38006314--38006516
110
1.8
110
85
6
286
26
19
21
33
1.97
38010901--38010988
29
3.0
29
83
1
104
37
23
15
22
1.93
38020397--38020436
2
20.0
2
100
0
80
50
0
0
50
1.00
38035679--38035762
43
1.9
44
85
2
116
25
20
32
22
1.98
38036043--38036161
38
3.1
38
87
4
159
22
23
24
29
1.99
38036158--38036289
45
3.0
45
83
7
157
25
21
28
25
1.99
38037334--38037433
34
2.7
39
74
19
104
30
22
19
29
1.97
38037356--38037433
34
2.3
35
86
8
108
30
19
19
30
1.96
38039059--38039109
22
2.3
22
100
0
102
41
7
15
35
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325