Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  93  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30834805--30834915
31
3.9
27
78
10
80
65
2
0
31
1.06
30834837--30834905
21
3.3
21
78
9
70
60
4
0
34
1.16
30834837--30834922
31
2.8
32
79
10
99
63
3
0
32
1.11
30834803--30834962
10
16.8
9
70
16
83
63
2
2
31
1.21
30835251--30835314
30
2.2
30
81
10
71
68
4
3
23
1.23
30836439--30836479
17
2.4
17
88
8
57
75
0
17
7
1.02
30836507--30836545
16
2.4
16
91
0
60
69
0
30
0
0.89
30838310--30838351
17
2.3
18
88
12
68
52
4
28
14
1.62
30838317--30838351
17
2.1
17
100
0
70
48
5
28
17
1.69
30838618--30838893
46
6.0
46
93
0
426
40
15
23
20
1.90
30838632--30838941
138
2.2
141
89
4
484
41
15
23
19
1.89
30838633--30838941
46
6.6
46
89
2
413
41
15
22
19
1.89
30840679--30840809
51
2.6
50
88
5
185
15
9
41
33
1.80
30845184--30845232
23
2.1
23
85
14
66
71
2
2
24
1.07
30845183--30845227
12
3.8
12
75
24
51
73
2
2
22
1.05
30846801--30846829
15
1.9
15
100
0
58
31
0
0
68
0.89
30847220--30847656
44
9.9
44
72
9
262
30
18
16
34
1.93
30847220--30847577
89
3.9
88
79
4
259
29
19
17
34
1.94
30847220--30847577
133
2.6
133
80
6
360
29
19
17
34
1.94
30860888--30860936
12
4.3
11
78
17
55
71
2
2
24
1.07
30860888--30860941
27
2.0
26
82
10
65
70
1
1
25
1.07
30864538--30864596
26
2.2
26
82
11
66
30
1
5
62
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30866608--30866656
20
2.5
20
90
9
82
38
0
0
61
0.96
30866576--30866636
32
1.9
32
90
3
97
37
0
0
62
0.96
30866711--30866759
16
3.2
16
72
19
50
36
0
2
61
1.08
30866708--30866816
38
2.8
37
72
14
103
36
0
2
60
1.11
30866697--30866812
29
4.0
30
75
17
95
36
0
2
61
1.10
30866860--30866991
31
4.4
29
75
13
99
43
0
2
53
1.18
30869972--30870169
48
4.1
48
90
0
288
12
9
41
36
1.74
30869969--30870169
96
2.1
96
89
0
321
11
8
42
36
1.73
30870099--30870309
84
2.5
84
85
1
289
9
12
42
35
1.75
30870787--30870844
28
2.2
27
79
17
68
43
3
5
48
1.42
30880430--30880549
6
19.3
6
69
19
77
48
15
17
18
1.82
30880439--30880549
31
3.5
31
90
1
150
48
15
18
18
1.81
30880694--30880785
27
3.4
26
88
5
121
35
19
23
20
1.95
30880961--30881014
22
2.5
22
76
11
65
35
22
22
20
1.96
30881468--30881709
27
9.0
27
88
3
282
26
20
19
34
1.96
30881459--30881713
54
4.7
55
88
1
349
25
20
20
34
1.96
30881441--30881713
81
3.4
81
86
2
361
26
20
19
34
1.96
30881729--30882110
54
7.3
54
83
7
455
31
8
20
39
1.82
30881698--30882037
27
12.6
27
84
0
394
32
9
19
38
1.83
30882022--30882053
16
2.0
16
100
0
64
31
0
31
37
1.58
30881995--30882080
43
2.0
43
90
0
136
32
6
23
37
1.82
30882038--30882117
27
3.0
27
87
3
117
31
7
22
38
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30881970--30882107
70
2.0
70
91
2
224
32
7
21
37
1.83
30883368--30883419
27
2.0
26
88
3
77
26
5
7
59
1.48
30883735--30883785
16
3.4
16
68
15
54
33
27
3
35
1.75
30883729--30883788
29
2.1
29
100
0
120
33
26
3
36
1.73
30890880--30890926
21
2.2
21
100
0
94
40
12
8
38
1.74
30892801--30893090
41
7.1
40
89
3
355
32
20
24
21
1.98
30892801--30893093
81
3.6
81
87
1
390
32
20
24
21
1.98
30892802--30893090
122
2.4
122
83
2
366
32
20
24
21
1.97
30893094--30893217
46
2.7
45
78
8
126
50
27
0
21
1.55
30893321--30893384
7
9.0
7
77
3
56
23
3
26
46
1.67
30893337--30893387
15
3.5
15
81
2
59
21
1
29
47
1.62
30893882--30893942
7
8.3
7
76
16
61
80
3
0
16
0.84
30893875--30893911
16
2.2
17
90
4
58
72
8
2
16
1.19
30893903--30893951
14
3.4
14
80
5
62
77
2
0
20
0.87
30893902--30893950
15
3.3
15
82
2
64
79
2
0
18
0.83
30893882--30893955
37
2.0
37
84
5
96
75
4
0
20
0.96
30894026--30894063
18
2.2
16
90
9
58
73
2
0
23
0.95
30894001--30894057
25
2.2
25
81
3
60
71
3
3
21
1.15
30894060--30894145
41
2.1
41
80
8
95
43
15
15
26
1.86
30898523--30898563
19
2.2
19
86
4
57
21
2
4
70
1.18
30898808--30899046
43
5.4
43
85
4
316
21
20
30
27
1.98
30907378--30907419
22
1.9
22
85
9
59
69
4
2
23
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30907387--30907429
22
2.0
21
86
4
59
67
4
4
23
1.28
30918667--30918700
16
2.1
16
89
10
52
32
0
0
67
0.91
30920120--30920209
41
2.5
33
73
24
99
50
11
5
33
1.61
30920133--30920201
18
3.2
24
61
26
62
52
11
5
30
1.61
30920132--30920214
41
2.0
41
100
0
166
50
12
4
32
1.60
30925397--30925434
10
3.8
10
89
0
58
28
10
0
60
1.30
30926154--30926228
39
2.0
36
84
7
96
29
12
2
56
1.49
30929243--30929282
17
2.3
18
91
4
64
42
10
12
35
1.76
30931698--30931758
10
6.0
10
84
7
79
22
8
0
68
1.15
30937490--30937549
28
2.1
28
100
0
120
35
30
10
25
1.88
30941427--30941514
7
12.7
7
95
2
160
27
0
0
72
0.85
30941428--30941556
7
19.5
6
82
13
84
26
0
0
72
0.89
30941429--30941533
21
4.9
21
90
5
140
25
0
0
74
0.82
30942944--30943174
100
2.3
98
85
3
311
29
28
19
23
1.98
30942944--30943174
49
4.7
49
83
3
311
29
28
19
23
1.98
30943393--30943446
27
2.0
27
85
0
72
38
12
7
40
1.72
30944651--30944693
22
2.0
22
85
0
59
32
41
11
13
1.81
30946526--30946583
26
2.3
26
82
8
68
68
5
0
25
1.10
30946945--30946983
21
1.9
20
94
5
69
23
5
0
71
1.05
30946947--30946996
21
2.4
21
83
6
57
28
6
2
64
1.28
30948288--30948377
6
15.0
6
77
13
71
18
4
1
75
1.03
30948300--30948354
28
2.0
27
82
13
67
18
5
1
74
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30948290--30948376
20
4.5
19
70
25
58
18
4
1
75
1.03
30960519--30960712
96
2.0
94
84
2
244
29
11
24
34
1.91
30961357--30961404
10
4.8
10
92
0
69
22
10
2
64
1.35
30961611--30961690
39
2.1
38
90
2
124
23
15
2
58
1.49
30966142--30966172
14
2.2
14
100
0
62
80
0
0
19
0.71
30968014--30968049
7
5.6
7
84
15
51
30
11
0
58
1.33
30977912--30977944
18
1.9
18
88
11
52
54
0
0
45
0.99
30984107--30984180
33
2.3
32
77
8
89
43
6
5
44
1.53
30985535--30985575
19
2.2
19
86
0
55
36
9
17
36
1.82
30986385--30986461
38
2.0
38
97
0
145
24
25
19
29
1.98
30989257--30989530
46
6.0
46
90
0
361
20
23
15
40
1.91
30993318--30993416
8
13.0
7
77
19
60
72
0
4
23
1.01
30993333--30993414
5
15.4
5
72
22
53
74
0
3
21
0.97
30993326--30993413
16
5.4
16
79
16
92
73
0
3
22
0.97
30993318--30993413
49
2.0
48
85
6
131
72
0
4
22
1.01
30996057--30996591
179
3.0
179
97
0
1007
27
15
17
39
1.90
30998839--30998882
16
2.6
17
82
3
54
65
6
2
25
1.28
30998859--30998897
13
3.1
13
85
14
55
58
12
0
28
1.34
31000853--31000878
10
2.6
10
100
0
52
53
19
11
15
1.71
31001708--31001741
17
2.0
17
88
0
50
29
0
8
61
1.26
31003062--31003199
39
3.5
39
76
7
120
24
21
26
27
1.99
31003317--31003357
18
2.3
18
87
8
57
48
0
21
29
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31003845--31003882
20
1.9
20
84
10
51
47
0
10
42
1.38
31007645--31007689
23
2.0
23
95
0
81
40
15
6
37
1.74
31028102--31028244
43
3.3
43
87
0
196
28
30
18
23
1.97
31028552--31028689
66
2.1
65
82
5
161
14
25
17
42
1.87
31033652--31033702
19
2.5
20
72
15
52
54
0
0
45
0.99
31044668--31044749
18
4.3
18
72
14
58
70
8
4
15
1.29
31044712--31044746
14
2.6
13
90
4
52
77
0
2
20
0.90
31053815--31053868
23
2.5
21
79
8
63
46
7
5
40
1.55
31054146--31054389
122
2.0
123
94
0
427
33
13
14
38
1.86
31055821--31055873
28
2.0
27
85
7
72
28
7
18
45
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325