genome.fa.s5.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  204  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63633913--63634093	62	2.9	62	89	1	245	28	27	17	27	1.97
63633887--63634093	93	2.2	94	83	6	258	28	28	15	28	1.97
63634086--63634194	33	3.3	33	82	5	123	25	22	12	39	1.89
63638015--63638088	34	2.2	34	92	0	121	31	27	13	28	1.94
63639718--63639817	24	4.2	24	82	0	128	36	5	39	20	1.74
63642609--63642649	18	2.3	17	84	12	55	21	41	0	36	1.54
63651582--63651776	27	7.3	27	80	5	200	29	24	8	37	1.84
63651582--63651776	79	2.4	80	84	4	243	29	24	8	37	1.84
63651779--63651930	27	5.7	26	75	6	126	40	21	10	27	1.86
63651828--63651931	53	1.9	54	82	5	131	40	20	9	29	1.84
63652007--63652084	27	2.9	27	76	14	72	37	20	19	23	1.95
63654185--63654819	47	13.6	47	87	5	835	27	29	9	33	1.88
63654589--63654661	22	3.3	22	65	24	62	24	28	13	32	1.94
63656076--63656254	85	2.1	85	98	0	349	26	27	8	37	1.85
63657509--63657866	40	9.1	40	92	2	562	25	28	21	24	1.99
63657509--63657866	79	4.5	79	93	0	574	25	28	21	24	1.99
63657920--63657994	38	2.0	38	86	5	107	24	26	18	30	1.98
63660447--63660568	22	5.3	22	62	21	61	25	29	11	33	1.91
63660419--63661445	47	21.6	47	91	3	1480	27	29	9	33	1.89
63660419--63661445	96	10.8	94	90	5	1480	27	29	9	33	1.89
63662707--63662885	85	2.1	85	98	0	349	26	27	8	37	1.85
63663720--63663789	25	2.8	24	91	4	104	24	27	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63663719--63663802	25	3.4	24	83	8	98	27	23	23	25	2.00
63663937--63664028	42	2.2	42	98	0	175	31	15	20	32	1.94
63664052--63664205	31	5.0	31	94	0	265	30	16	24	29	1.96
63667307--63667353	23	2.0	25	84	12	64	46	2	0	51	1.13
63668044--63668082	20	2.0	21	90	10	64	17	5	15	61	1.51
63680480--63680525	9	4.7	10	82	10	51	36	19	8	34	1.83
63681601--63681645	21	2.1	21	84	8	56	40	2	42	15	1.59
63684289--63684335	20	2.3	20	92	7	78	36	10	19	34	1.86
63684383--63684463	23	3.4	24	83	10	103	29	19	20	29	1.97
63684671--63684757	38	2.6	31	76	22	102	35	16	24	24	1.94
63691762--63691962	40	5.1	40	82	7	232	24	22	27	25	2.00
63696272--63696454	79	2.3	81	83	7	223	24	27	23	24	2.00
63696270--63696454	40	4.7	40	82	9	218	24	27	23	24	2.00
63699808--63700026	46	4.7	46	78	12	207	22	29	20	26	1.99
63699808--63700028	94	2.4	91	83	8	259	23	29	20	26	1.99
63700476--63700510	17	2.1	17	100	0	70	37	22	11	28	1.89
63700705--63700729	12	2.1	12	100	0	50	60	16	8	16	1.58
63704362--63704425	31	2.1	31	91	8	105	59	10	3	26	1.46
63711532--63712351	43	19.3	42	82	5	691	17	31	31	18	1.95
63711532--63712240	128	5.5	127	83	4	761	17	31	32	19	1.94
63712215--63712325	42	2.7	42	84	4	136	20	35	27	17	1.95
63712656--63712734	24	3.3	25	78	8	83	21	36	35	6	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63719190--63719366	85	2.1	86	80	9	202	19	36	27	16	1.93
63719190--63719366	43	4.1	42	74	7	153	19	36	27	16	1.93
63719343--63719573	43	5.4	43	87	3	288	19	30	32	17	1.95
63719345--63719573	85	2.7	86	84	3	293	19	30	32	17	1.95
63719300--63719619	128	2.5	127	78	9	362	19	32	30	17	1.95
63720004--63720074	24	2.9	25	83	6	83	22	35	35	7	1.81
63733108--63734025	170	5.4	171	82	6	940	17	31	32	17	1.94
63733108--63733901	213	3.7	214	82	4	946	17	31	33	18	1.94
63733882--63733992	42	2.7	41	81	4	114	20	35	27	17	1.95
63733108--63734025	43	21.6	43	83	4	897	17	31	32	17	1.94
63734331--63734377	24	2.0	24	95	0	85	23	36	34	6	1.80
63738547--63738900	177	2.0	178	84	2	460	29	26	24	19	1.98
63748951--63749746	43	18.7	43	80	4	722	18	32	31	17	1.95
63748951--63749662	85	8.3	86	81	5	739	18	31	31	18	1.95
63748951--63749746	128	6.2	129	80	4	733	18	32	31	17	1.95
63748951--63749746	85	9.3	85	80	4	716	18	32	31	17	1.95
63756193--63756550	181	2.0	181	88	3	542	30	26	24	18	1.98
63761826--63762895	128	8.4	128	80	4	956	19	31	31	17	1.95
63761826--63762833	85	11.8	86	79	5	835	19	31	31	17	1.95
63761826--63762894	43	25.1	43	79	5	835	19	31	31	17	1.95
63762772--63762861	42	2.1	42	97	0	171	21	36	28	13	1.91
63763137--63763201	24	2.7	25	80	7	80	21	32	38	7	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63769704--63770030	182	1.8	180	88	2	503	29	28	25	16	1.97
63777184--63777829	43	15.1	43	82	4	609	19	32	31	17	1.95
63780713--63780779	31	2.2	31	94	0	116	32	19	23	23	1.97
63781448--63782646	43	28.6	43	75	10	834	20	32	30	17	1.95
63781448--63782646	85	14.3	86	76	10	834	20	32	30	17	1.95
63782124--63782259	69	2.0	69	86	0	191	22	29	27	21	1.99
63782238--63782713	86	5.6	85	78	8	402	20	30	30	18	1.96
63782589--63782682	42	2.2	43	90	1	145	22	32	27	17	1.96
63788002--63788040	15	2.4	16	83	12	53	20	46	15	17	1.84
63788013--63788042	15	2.0	15	100	0	60	26	40	13	20	1.89
63795051--63795605	182	3.0	183	89	4	811	30	25	24	19	1.98
63800722--63801572	43	20.0	43	80	3	724	20	30	30	18	1.97
63800722--63801572	85	10.0	86	78	6	691	20	30	30	18	1.97
63800783--63801529	127	5.9	126	78	6	553	20	30	30	18	1.96
63800726--63801570	213	4.0	212	78	6	791	20	30	30	18	1.97
63802042--63802113	35	2.1	35	86	0	99	29	25	9	36	1.88
63806106--63806221	58	2.0	58	86	3	162	25	19	19	34	1.96
63828932--63828979	24	2.1	22	92	7	78	20	39	27	12	1.89
63829061--63830740	43	39.5	43	79	4	1400	20	31	30	17	1.96
63829061--63830691	341	4.8	340	79	5	1604	20	31	30	17	1.96
63829061--63830777	212	8.1	213	76	6	1323	20	31	30	17	1.96
63829104--63830777	255	6.6	255	79	6	1435	20	31	30	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63830588--63830865	43	6.6	43	78	6	192	20	32	29	18	1.96
63829860--63830893	86	12.2	85	72	12	282	19	31	30	18	1.96
63835314--63835355	20	2.1	20	100	0	84	28	30	16	23	1.96
63837715--63837830	58	2.0	58	87	0	169	25	23	21	30	1.99
63838276--63838815	181	3.0	180	87	4	773	30	25	23	20	1.99
63844322--63844432	27	4.1	27	82	5	127	36	23	22	17	1.94
63844322--63844432	54	2.1	53	84	1	141	36	23	22	17	1.94
63845832--63845883	25	2.1	24	96	3	95	21	38	3	36	1.72
63851715--63851739	10	2.5	10	100	0	50	40	0	0	60	0.97
63853285--63853462	27	6.6	27	85	3	205	29	29	14	26	1.95
63853285--63853462	54	3.3	54	85	3	232	29	29	14	26	1.95
63853306--63853461	81	1.9	82	88	3	235	29	29	14	26	1.95
63855599--63855749	79	1.9	79	95	1	277	25	10	21	42	1.85
63855725--63855874	40	3.7	41	89	2	225	21	25	23	30	1.99
63855724--63855898	40	4.4	40	87	2	165	19	22	22	34	1.96
63855953--63855978	12	2.2	12	100	0	52	46	30	15	7	1.74
63860159--63860413	55	4.8	53	79	8	236	21	24	17	36	1.94
63860206--63860406	108	1.8	110	88	4	309	22	24	17	35	1.95
63868217--63868247	16	1.9	16	93	0	53	35	22	0	41	1.54
63868214--63868253	20	2.0	20	85	0	53	37	22	0	40	1.54
63868439--63868693	55	4.8	53	80	8	220	21	24	16	36	1.94
63868486--63868686	108	1.8	110	87	4	300	22	24	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63870318--63870534	40	5.4	40	90	5	325	26	29	23	21	1.99
63876855--63876915	21	3.0	21	92	2	97	21	24	39	14	1.91
63878202--63878381	94	1.9	94	85	2	245	23	27	18	29	1.98
63878202--63878395	46	4.1	48	78	4	207	24	28	18	28	1.98
63892619--63892847	48	4.8	48	91	0	359	34	6	28	30	1.84
63892619--63892847	96	2.4	96	94	0	395	34	6	28	30	1.84
63892892--63892994	37	2.8	37	95	0	188	21	22	32	24	1.98
63894943--63895377	40	10.9	40	87	0	582	25	20	27	26	1.99
63898262--63898479	48	4.5	48	91	1	330	33	6	29	29	1.83
63898262--63898479	96	2.3	96	94	0	373	33	6	29	29	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325