Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  109  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34793199--34793260
28
2.2
28
80
5
72
24
14
1
59
1.44
34793250--34793386
48
2.9
48
79
13
169
25
11
0
62
1.34
34793178--34793531
164
2.2
162
80
10
391
25
12
0
61
1.35
34793208--34793529
115
2.8
113
79
14
309
25
12
0
61
1.36
34793404--34793577
48
3.6
48
81
9
119
25
12
0
62
1.30
34793489--34793605
28
4.5
28
76
14
133
23
12
0
64
1.28
34793178--34793602
22
18.0
22
70
20
188
24
12
0
61
1.34
34793441--34793602
28
6.4
27
71
20
125
24
13
0
62
1.31
34793423--34793579
48
3.2
48
86
4
199
26
12
0
61
1.32
34793489--34793636
76
1.9
77
91
1
244
22
13
0
64
1.28
34793280--34793636
49
7.4
49
73
15
201
24
12
0
61
1.33
34793330--34793637
27
12.6
26
66
22
102
25
12
0
62
1.31
34796792--34796825
7
4.9
7
85
0
50
44
35
0
20
1.52
34804702--34804968
104
2.6
104
92
1
437
18
19
31
30
1.96
34812240--34812289
26
1.9
26
95
0
91
14
26
34
26
1.94
34812170--34812424
101
2.5
102
86
6
355
18
20
30
30
1.96
34812341--34812392
25
2.0
26
92
3
88
15
21
34
28
1.94
34817457--34817509
22
2.5
21
87
3
79
39
0
3
56
1.17
34817625--34817698
24
3.0
23
70
14
58
35
5
5
54
1.47
34817839--34817880
21
2.0
22
90
4
68
30
2
0
66
1.04
34827544--34827685
74
1.9
74
91
0
230
43
13
16
26
1.85
34827806--34827955
43
3.5
43
87
0
230
22
33
24
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34828613--34828905
43
6.8
43
92
1
480
25
19
31
23
1.98
34834951--34835131
9
19.6
9
71
12
98
37
1
13
47
1.53
34834980--34835039
17
3.4
17
75
6
66
38
1
10
50
1.46
34834960--34835162
96
2.1
96
87
1
291
37
1
12
47
1.52
34835065--34835097
17
1.9
17
93
0
57
36
3
9
51
1.49
34835236--34835265
15
2.0
15
100
0
60
53
0
0
46
1.00
34835393--34835556
72
2.3
72
95
1
294
60
4
6
28
1.41
34835483--34836034
273
2.0
275
99
0
1090
39
11
13
35
1.81
34836296--34836324
15
1.9
15
100
0
58
48
20
6
24
1.74
34836525--34837076
183
3.0
183
97
0
1023
42
15
15
26
1.86
34839887--34839935
15
3.5
15
68
21
52
30
0
51
18
1.47
34839886--34839938
26
2.0
26
96
0
97
32
0
47
20
1.51
34840216--34840273
28
2.1
28
83
6
73
36
29
1
32
1.68
34840250--34840293
21
2.1
21
91
0
70
34
34
2
29
1.70
34840633--34840869
41
5.8
41
96
0
429
22
25
20
32
1.98
34841380--34841432
22
2.4
22
87
6
72
43
20
5
30
1.75
34841837--34842328
23
21.5
23
74
11
379
37
24
5
32
1.78
34841821--34842328
46
11.1
45
79
8
476
36
24
5
33
1.79
34841821--34842281
184
2.5
183
91
3
734
37
24
5
32
1.79
34841998--34842328
114
2.9
114
78
8
395
37
23
5
33
1.78
34841834--34842328
91
5.4
91
76
10
465
37
24
5
33
1.78
34843495--34843544
12
4.2
12
73
14
50
42
24
0
34
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34845645--34845672
7
4.0
7
100
0
56
14
0
0
85
0.59
34845940--34846029
45
2.0
45
80
8
103
41
37
2
18
1.63
34845902--34846020
15
8.1
15
66
10
50
36
41
0
21
1.60
34845936--34846046
7
15.1
7
70
15
64
42
37
1
18
1.61
34846359--34846415
7
8.0
7
80
3
51
43
31
3
21
1.69
34846356--34846415
14
4.1
15
74
6
61
43
33
3
20
1.68
34846600--34846678
40
2.0
40
87
0
113
21
25
17
35
1.95
34859026--34859112
41
2.2
40
82
2
102
65
4
2
27
1.24
34859106--34859168
28
2.2
29
83
5
76
66
0
6
26
1.15
34870970--34871016
24
2.0
24
86
0
67
10
6
25
57
1.56
34872709--34872753
18
2.5
18
82
7
56
35
42
6
15
1.73
34872766--34872806
15
2.7
15
88
0
55
19
68
0
12
1.21
34872784--34872813
6
5.0
6
95
0
51
20
66
0
13
1.24
34872766--34872812
21
2.2
21
92
0
76
19
68
0
12
1.21
34872766--34872813
18
2.7
18
86
0
60
18
66
0
14
1.25
34872945--34872986
12
3.5
12
83
0
57
28
45
11
14
1.80
34873086--34873132
24
2.0
24
83
8
60
36
40
8
14
1.77
34873136--34873184
15
3.3
15
76
0
53
16
65
0
18
1.28
34873141--34873188
24
2.0
24
87
0
69
12
64
0
22
1.27
34873429--34873454
6
4.3
6
100
0
52
84
0
0
15
0.62
34875924--34875949
2
13.0
2
100
0
52
50
0
0
50
1.00
34879358--34879390
16
2.1
16
94
0
57
69
6
6
18
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34880257--34880658
44
9.1
44
74
3
286
29
19
17
33
1.94
34880266--34880560
133
2.2
133
81
4
335
30
19
16
33
1.94
34880313--34880646
89
3.8
89
80
5
318
29
21
16
32
1.95
34892395--34892427
17
1.9
17
93
0
57
72
0
6
21
1.05
34893123--34893149
13
2.1
13
100
0
54
70
7
0
22
1.12
34895693--34895813
20
6.3
20
73
17
80
31
0
3
64
1.15
34895751--34895819
20
3.5
20
82
11
88
34
0
2
62
1.10
34895795--34895846
27
2.0
27
85
11
72
32
1
1
63
1.16
34895891--34895936
22
2.1
22
84
8
58
21
2
8
67
1.29
34904141--34904423
44
6.5
44
68
18
187
36
21
19
23
1.95
34904099--34904379
88
3.2
89
84
6
349
35
21
19
22
1.96
34904239--34904530
131
2.2
132
81
6
342
34
18
23
23
1.96
34905549--34905619
15
4.9
14
77
13
63
25
8
0
66
1.20
34905556--34905589
14
2.3
15
90
5
52
26
5
0
67
1.13
34905547--34905629
44
1.9
42
88
9
123
26
8
0
65
1.21
34905550--34905641
44
2.2
44
84
9
120
28
7
0
64
1.21
34906009--34906249
127
1.9
126
82
2
304
26
16
19
38
1.92
34909923--34909954
16
2.0
16
93
0
55
21
12
28
37
1.90
34916600--34916641
21
2.0
22
90
4
68
28
11
4
54
1.57
34917466--34917560
48
2.1
44
84
11
120
42
5
23
29
1.76
34922246--34922288
17
2.5
18
81
11
54
76
0
2
20
0.89
34932625--34932654
3
10.3
3
92
7
53
0
0
63
36
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34932627--34932654
14
2.0
14
100
0
56
0
0
64
35
0.94
34932687--34932736
24
2.1
24
100
0
100
24
16
16
44
1.86
34935518--34935563
6
7.7
6
90
0
74
2
50
30
17
1.58
34935533--34935573
18
2.3
18
86
0
55
2
48
34
14
1.57
34937794--34937867
30
2.4
31
77
6
78
59
10
0
29
1.31
34939461--34939507
23
2.0
23
88
12
69
31
4
0
63
1.13
34940818--34940888
35
2.0
35
97
0
133
46
15
22
15
1.83
34946500--34946541
20
2.1
20
82
8
50
35
9
4
50
1.56
34946695--34946733
19
2.1
19
100
0
78
25
12
15
46
1.81
34949762--34949801
18
2.2
18
86
0
53
62
5
32
0
1.17
34950485--34950519
10
3.6
10
84
7
54
68
0
2
28
1.04
34952571--34952656
36
2.4
35
80
14
88
39
2
20
37
1.66
34962540--34962594
21
2.6
23
77
16
64
50
3
3
41
1.37
34963867--34963927
31
2.0
31
90
0
95
31
22
4
40
1.75
34964815--34964861
22
2.1
22
88
0
67
51
4
17
27
1.64
34966528--34966557
15
2.0
15
93
0
51
6
70
13
10
1.34
34966541--34966605
6
10.8
6
89
0
85
1
61
15
21
1.42
34970367--34970430
28
2.4
28
85
10
82
60
3
4
31
1.32
34970979--34971041
29
2.3
27
81
13
67
61
0
7
30
1.24
34971002--34971058
27
2.1
27
80
6
62
66
1
7
24
1.26
34972032--34972077
16
2.8
16
81
18
51
80
0
13
6
0.89
34972041--34972081
20
2.0
20
90
9
66
80
0
9
9
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34973569--34973620
27
2.0
27
88
3
79
44
30
11
13
1.79
34975893--34975991
32
3.1
32
83
1
119
20
34
26
19
1.96
34978069--34978230
35
4.7
35
80
3
184
34
25
11
29
1.90
34982093--34982138
21
2.2
21
88
0
65
15
30
36
17
1.91
34982080--34982132
21
2.4
23
75
12
56
18
30
35
15
1.92
34987143--34987700
300
1.8
305
83
6
756
40
8
12
38
1.74
34987785--34987832
23
2.2
21
81
7
51
33
2
2
62
1.18
34989941--34989969
5
5.8
5
100
0
58
82
0
0
17
0.66
34991176--34991213
17
2.2
17
86
9
51
68
10
0
21
1.19
34994429--34994781
37
9.5
37
74
6
300
38
18
15
27
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325