genome.fa.s5.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  152  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48223810--48223895	27	3.1	27	76	20	88	36	8	15	40	1.77
48223873--48224023	27	5.6	27	85	1	178	30	7	20	41	1.79
48223874--48224023	81	1.9	81	88	0	228	30	7	20	42	1.79
48224054--48224334	27	10.4	27	84	1	303	40	6	22	30	1.79
48225911--48225955	21	2.2	20	84	4	54	24	15	15	44	1.85
48228976--48229153	27	6.6	27	83	3	205	26	15	28	29	1.96
48228977--48229132	82	1.9	81	88	3	233	26	15	28	29	1.96
48228973--48229153	82	2.2	81	83	2	229	27	15	27	29	1.96
48237001--48237176	27	6.5	27	82	7	155	27	15	27	29	1.96
48237000--48237176	53	3.3	54	78	10	182	27	15	27	29	1.96
48248007--48248218	68	3.1	68	65	23	181	34	6	16	42	1.74
48247950--48248225	137	2.0	137	97	0	516	34	6	17	42	1.76
48248442--48248613	67	2.7	64	73	11	170	27	16	30	24	1.97
48250706--48250795	35	2.5	36	89	1	146	42	28	10	18	1.83
48262253--48262313	30	2.0	30	93	0	104	37	3	24	34	1.72
48276654--48277009	40	8.9	40	90	0	532	23	21	29	26	1.99
48277173--48277225	25	2.1	25	82	6	63	35	13	30	20	1.91
48288360--48288457	28	3.5	28	95	1	171	32	29	12	25	1.92
48296639--48296736	28	3.5	28	92	1	162	32	28	12	26	1.92
48302460--48302507	23	2.0	23	88	11	71	66	2	4	27	1.21
48302459--48302535	20	3.8	20	75	16	79	67	2	3	25	1.21
48302590--48302617	11	2.5	11	100	0	56	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48302791--48302848	26	2.2	26	78	6	64	56	5	6	31	1.47
48303703--48303815	54	2.1	53	85	3	147	33	2	2	61	1.24
48305358--48305400	18	2.4	18	92	0	68	20	27	9	41	1.83
48308914--48309181	126	2.1	126	84	2	351	31	14	15	38	1.88
48309249--48309354	49	2.1	51	82	3	126	49	26	0	23	1.57
48318812--48318886	28	2.7	28	85	0	105	28	33	13	25	1.93
48324130--48324236	29	3.7	29	76	6	110	24	31	14	28	1.95
48324132--48324244	58	2.0	57	83	1	145	24	30	14	30	1.94
48324317--48324353	19	2.0	18	89	5	56	18	40	16	24	1.90
48324326--48324362	19	1.9	19	88	0	56	16	37	18	27	1.92
48340700--48340750	18	2.7	18	82	14	50	45	1	5	47	1.38
48344039--48344184	51	2.9	49	84	3	202	27	25	20	26	1.99
48344431--48344484	27	2.0	27	85	0	72	38	14	7	38	1.75
48350716--48350765	22	2.3	22	96	0	91	32	16	22	30	1.95
48351947--48352027	42	1.9	42	82	9	103	23	25	30	19	1.98
48355092--48355271	49	3.7	49	75	8	170	28	21	27	22	1.99
48360867--48361118	63	3.9	64	76	10	199	24	29	16	29	1.96
48361783--48361843	30	2.0	30	83	0	77	31	22	8	37	1.84
48362682--48362850	50	3.6	45	74	12	160	26	18	30	24	1.98
48364858--48365013	77	2.0	78	92	1	260	40	21	12	26	1.88
48367306--48367472	43	3.9	44	80	6	173	33	25	13	27	1.94
48371912--48372050	57	2.4	57	80	12	144	29	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48377046--48377095	23	2.2	22	82	10	57	0	30	4	66	1.10
48379455--48379621	43	3.9	44	76	10	141	29	15	23	30	1.96
48380414--48380472	24	2.5	23	75	10	57	28	0	32	38	1.57
48385044--48385321	50	5.5	50	79	3	245	32	26	16	24	1.96
48387692--48387803	29	3.9	29	88	3	156	22	16	32	29	1.95
48387692--48387803	57	1.9	58	85	5	156	22	16	32	29	1.95
48390894--48390989	34	2.9	33	80	10	106	25	22	25	27	2.00
48394315--48394347	18	1.9	17	88	11	50	42	12	15	30	1.83
48394586--48394897	27	11.6	27	81	2	299	38	19	10	31	1.86
48394585--48394871	80	3.6	80	81	7	341	38	19	10	32	1.85
48394586--48394828	107	2.3	107	87	1	344	39	18	9	32	1.84
48394586--48394871	54	5.3	54	83	4	346	38	19	9	32	1.84
48394836--48394910	27	2.8	27	89	0	105	37	18	17	26	1.93
48396468--48396519	21	2.5	21	90	0	77	9	25	38	26	1.86
48400186--48400355	41	4.2	40	74	18	161	27	27	22	22	1.99
48408525--48408694	41	4.2	40	74	18	152	28	27	21	22	1.99
48422392--48422418	13	2.1	13	100	0	54	37	7	40	14	1.74
48422575--48422620	23	1.9	25	86	8	69	4	32	0	63	1.14
48424251--48424407	6	25.8	6	74	16	128	47	13	17	21	1.81
48424262--48424403	61	2.2	65	84	9	177	47	14	17	21	1.82
48424256--48424407	67	2.3	67	83	11	195	47	13	17	21	1.82
48424292--48424407	49	2.4	49	89	2	171	46	13	18	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48424764--48424821	22	2.6	22	86	0	71	32	22	24	20	1.98
48424909--48424991	27	3.1	26	87	5	112	37	21	21	19	1.94
48425190--48425358	27	6.3	27	83	0	203	26	20	18	34	1.96
48425363--48425907	27	20.2	27	82	5	600	40	8	22	28	1.83
48425353--48425897	108	5.1	108	87	2	722	40	8	21	28	1.83
48427926--48427993	6	11.3	6	87	12	104	50	16	17	16	1.79
48427926--48428039	24	4.7	24	83	5	149	50	14	15	19	1.79
48427931--48428036	18	5.8	18	79	10	101	49	16	16	18	1.80
48428155--48428229	27	2.8	27	71	13	66	38	21	21	18	1.93
48428394--48428452	22	2.7	22	81	0	64	32	22	25	20	1.98
48428540--48428622	27	3.1	26	87	5	112	37	21	21	19	1.94
48428821--48429008	27	7.0	27	85	0	205	26	18	19	36	1.94
48428823--48429031	81	2.6	82	82	2	235	28	17	18	36	1.93
48428839--48429029	27	7.1	27	78	11	110	27	17	19	35	1.94
48429021--48429617	27	22.1	27	84	5	688	40	9	22	27	1.84
48430613--48430675	26	2.3	27	81	8	74	36	23	11	28	1.89
48430783--48430869	27	3.2	26	85	3	111	17	19	26	36	1.94
48430783--48430889	27	4.0	27	81	4	110	18	19	23	38	1.93
48441032--48441290	27	9.7	26	81	5	232	40	21	8	30	1.82
48441032--48441290	54	4.8	53	80	4	259	40	21	8	30	1.82
48441037--48441290	134	1.9	134	81	3	305	40	21	8	30	1.82
48441220--48441345	27	4.7	27	73	7	94	38	23	7	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48441329--48441469	27	5.2	27	83	6	187	34	17	20	28	1.95
48441860--48441910	22	2.3	23	83	10	70	23	25	19	31	1.98
48441860--48441918	22	2.6	22	79	12	59	20	23	22	33	1.97
48442080--48442163	27	3.1	27	79	6	89	19	20	22	38	1.94
48442308--48442370	25	2.5	25	81	0	72	20	19	12	47	1.81
48442353--48442421	6	11.3	6	76	14	70	17	18	14	49	1.80
48442325--48442407	31	2.7	31	88	0	121	18	20	13	48	1.81
48444317--48444575	27	9.6	27	84	0	277	39	21	8	30	1.83
48444317--48444522	107	1.9	107	89	0	322	38	19	8	32	1.83
48444317--48444630	27	11.7	27	78	4	233	38	21	8	31	1.84
48444614--48444809	27	7.3	27	86	0	275	33	17	22	26	1.96
48445199--48445260	22	2.8	22	85	7	81	22	25	20	30	1.98
48445421--48445500	27	3.0	27	76	7	72	20	22	21	36	1.95
48445658--48445726	6	11.3	6	76	14	70	18	18	13	49	1.79
48447613--48447873	27	9.7	27	85	0	279	39	20	8	31	1.83
48447613--48447927	27	11.7	27	79	4	242	38	20	8	32	1.83
48447911--48448105	27	7.2	27	87	2	275	32	16	22	28	1.96
48448398--48448462	22	3.0	22	84	8	87	20	24	23	32	1.98
48448621--48448729	27	4.1	26	85	5	137	18	22	22	36	1.95
48448845--48448903	25	2.4	25	82	0	73	25	15	10	49	1.76
48448868--48448949	31	2.6	31	82	0	101	19	17	13	50	1.78
48448895--48448963	6	11.3	6	70	14	52	17	15	14	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48451213--48451307	15	6.5	15	77	18	110	54	8	0	36	1.31
48451237--48451287	14	3.6	14	70	15	50	54	9	0	35	1.33
48451222--48451302	29	2.8	29	92	0	144	54	8	0	37	1.31
48451216--48451307	29	3.1	28	79	14	114	55	7	0	36	1.29
48451777--48451850	13	5.7	13	80	0	76	39	27	8	25	1.84
48454593--48454765	46	3.7	46	75	13	183	23	20	27	28	1.99
48454590--48454760	93	1.8	93	91	0	279	22	21	28	28	1.99
48458817--48458843	7	3.9	7	100	0	54	29	0	55	14	1.40
48474035--48474101	35	1.9	34	84	3	89	28	22	17	31	1.97
48475654--48475968	49	6.6	49	77	7	177	23	27	20	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325