Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  111  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35287903--35288019
12
9.3
12
74
14
94
4
11
2
82
0.92
35287951--35288021
17
4.3
16
82
7
70
7
7
1
84
0.83
35287960--35288021
8
7.9
8
82
13
58
6
6
1
85
0.80
35293560--35294145
289
2.0
290
91
1
953
25
15
25
33
1.95
35297740--35297784
8
5.6
8
86
0
63
51
17
24
6
1.70
35297740--35297784
16
2.8
16
93
0
72
51
17
24
6
1.70
35300661--35300715
21
2.5
22
75
13
60
67
7
10
14
1.41
35300868--35300912
13
3.4
13
82
11
56
68
6
6
17
1.33
35302378--35302524
39
3.7
38
83
8
177
37
27
12
22
1.90
35302375--35302524
40
3.7
39
83
5
192
36
28
12
22
1.91
35304629--35304674
20
2.3
20
96
0
83
13
32
23
30
1.93
35306085--35306142
3
19.3
3
100
0
116
67
0
0
32
0.91
35307003--35307064
31
2.0
31
81
9
74
61
0
17
20
1.35
35313326--35313354
14
2.0
15
93
6
51
31
0
20
48
1.50
35316836--35316881
15
2.9
16
84
9
58
45
2
0
52
1.13
35318952--35319014
30
2.1
30
90
0
99
60
12
3
23
1.47
35320836--35320892
28
2.1
26
84
12
71
71
3
19
5
1.19
35320827--35320892
27
2.5
26
80
11
71
72
3
19
4
1.15
35323650--35323770
64
1.9
64
85
0
170
22
20
23
33
1.97
35323640--35323785
64
2.3
64
78
0
166
22
24
21
31
1.98
35338418--35338451
6
5.7
6
89
0
50
52
14
17
14
1.74
35340980--35341060
21
3.8
21
72
15
76
19
24
39
16
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35341814--35341839
4
6.5
4
100
0
52
76
0
0
23
0.78
35343556--35343624
29
2.4
29
100
0
138
24
28
21
24
1.99
35347014--35347159
42
3.5
42
80
1
114
19
21
17
41
1.90
35352443--35352562
24
5.0
24
68
10
93
20
21
20
37
1.94
35353544--35353627
42
2.0
40
86
8
116
20
23
32
23
1.98
35358065--35358091
13
2.1
13
100
0
54
51
18
7
22
1.70
35359282--35359345
31
2.1
31
90
0
101
25
23
15
35
1.94
35359553--35359656
23
4.4
24
92
3
167
27
22
21
28
1.99
35359712--35359770
9
6.1
9
77
14
64
37
20
6
35
1.79
35359702--35359772
20
3.5
20
92
0
115
35
21
8
35
1.84
35359809--35359856
25
1.9
25
86
0
69
27
14
25
33
1.94
35361121--35361173
27
2.0
27
84
0
70
35
13
15
35
1.86
35361130--35361238
27
4.0
27
75
15
89
32
9
17
41
1.81
35361219--35361319
27
3.7
27
81
6
125
30
6
19
42
1.78
35361311--35361495
27
6.9
27
86
0
235
37
8
26
28
1.85
35361311--35361522
54
3.9
53
80
9
180
36
8
25
29
1.86
35363160--35363195
18
2.0
18
88
0
54
69
5
5
19
1.29
35367552--35367673
42
2.9
42
75
11
117
20
22
16
40
1.91
35376135--35376194
30
2.0
31
90
9
97
18
40
0
41
1.50
35376185--35376230
5
9.6
5
88
9
69
15
63
0
21
1.31
35376195--35376241
13
3.5
13
82
8
51
19
63
0
17
1.30
35376591--35376667
38
2.0
38
100
0
154
50
7
23
18
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35377784--35377833
10
5.0
10
81
13
59
24
8
0
68
1.16
35378569--35378643
39
1.9
39
84
10
100
29
10
4
56
1.52
35381537--35381591
19
2.8
19
75
25
60
20
3
0
76
0.94
35382669--35382851
96
1.9
97
87
3
271
27
18
24
30
1.98
35384201--35384274
31
2.4
31
95
0
130
21
27
16
35
1.94
35384479--35384586
24
4.4
25
83
4
112
25
21
21
31
1.98
35384479--35384562
26
3.4
25
85
4
116
28
21
19
30
1.97
35384456--35384586
24
5.2
24
80
6
109
25
21
20
32
1.98
35384634--35384681
11
4.6
11
80
12
57
33
18
12
35
1.89
35385885--35385934
20
2.5
20
96
0
91
50
10
16
24
1.75
35388402--35388591
51
3.8
49
83
2
227
28
17
24
29
1.97
35390883--35390968
41
2.1
41
78
4
95
26
11
5
55
1.58
35407294--35407428
30
4.6
29
76
10
96
42
2
22
32
1.68
35407327--35407428
30
3.4
30
84
2
134
44
3
22
29
1.71
35407699--35408078
54
7.1
54
90
5
592
37
17
15
29
1.91
35407699--35408078
107
3.5
109
91
4
596
37
17
15
29
1.91
35408057--35408091
14
2.5
14
90
0
52
60
2
17
20
1.49
35408025--35408679
192
3.6
179
82
9
605
37
19
16
27
1.93
35408179--35408679
87
5.7
86
80
10
536
36
19
17
26
1.93
35408339--35408372
16
2.1
16
88
0
50
64
5
11
17
1.45
35408603--35408632
14
2.1
14
93
0
51
66
3
6
23
1.30
35420895--35420955
17
3.8
17
76
20
60
54
3
6
36
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35422008--35422124
30
3.9
30
83
3
139
43
2
23
30
1.67
35421995--35422124
60
2.2
59
81
4
163
43
2
21
33
1.65
35422120--35422154
14
2.4
15
90
4
54
25
0
2
71
1.00
35425274--35425307
10
3.3
10
95
4
59
73
0
0
26
0.83
35425274--35425307
11
3.2
11
91
8
61
73
0
0
26
0.83
35427460--35427500
19
2.1
20
86
13
59
60
2
2
34
1.23
35427576--35427609
13
2.6
14
90
9
54
58
0
0
41
0.98
35427594--35427637
17
2.4
18
92
7
72
61
0
0
38
0.96
35427580--35427665
20
4.4
19
75
11
68
54
0
0
45
0.99
35435248--35435287
18
2.3
18
87
8
57
25
10
12
52
1.70
35436649--35436686
18
2.2
18
86
9
53
68
5
15
10
1.36
35446619--35446685
28
2.4
27
78
7
71
1
23
0
74
0.90
35446647--35446684
13
2.7
14
84
12
51
2
15
0
81
0.80
35446610--35446681
27
2.7
26
74
14
67
1
20
0
77
0.84
35457436--35457464
15
1.9
15
100
0
58
41
6
0
51
1.28
35458691--35458717
13
2.1
13
100
0
54
14
25
37
22
1.93
35466014--35466056
22
2.0
22
85
0
59
55
9
13
20
1.66
35468808--35468835
14
2.0
14
100
0
56
35
0
35
28
1.58
35475043--35475094
21
2.7
18
76
21
52
21
30
26
21
1.98
35475054--35475108
21
2.6
21
91
0
83
18
30
32
18
1.95
35486852--35486877
13
2.0
13
100
0
52
7
0
53
38
1.30
35487130--35487188
30
2.0
30
89
0
91
11
11
40
35
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35487685--35487716
7
4.6
7
92
0
55
56
12
3
28
1.51
35497838--35497871
17
1.9
18
94
5
61
67
0
2
29
1.05
35498439--35498497
23
2.7
23
80
12
61
49
3
5
42
1.41
35499150--35499222
29
2.5
29
79
2
83
39
13
8
38
1.75
35503782--35503918
60
2.3
59
82
8
152
24
24
21
29
1.99
35503911--35503966
20
2.8
20
83
2
69
33
23
16
26
1.95
35508643--35508687
10
4.2
11
81
13
58
71
2
0
26
0.98
35508643--35508714
20
3.6
19
77
18
60
72
2
1
23
1.06
35513353--35513451
3
32.7
3
85
6
119
67
0
32
0
0.91
35513360--35513429
24
2.9
24
97
0
131
72
0
27
0
0.84
35514507--35514534
11
2.5
11
100
0
56
35
0
7
57
1.26
35516150--35516182
6
5.5
6
100
0
66
33
30
36
0
1.58
35519667--35519708
16
2.5
17
88
3
59
61
0
0
38
0.96
35520354--35520471
51
2.3
51
82
7
130
38
22
22
17
1.94
35520754--35520788
3
11.7
3
100
0
70
65
0
0
34
0.93
35521404--35521441
17
2.1
19
90
9
62
0
23
0
76
0.79
35523835--35523991
43
3.7
41
79
11
165
33
25
17
24
1.96
35523848--35523991
42
3.4
41
82
9
164
33
25
16
25
1.96
35526901--35526960
26
2.7
20
71
28
57
48
8
5
38
1.55
35529774--35529804
3
10.3
3
100
0
62
32
0
0
67
0.91
35529891--35529922
3
10.7
3
93
0
55
31
3
0
65
1.08
35530028--35530053
13
2.0
13
100
0
52
30
0
0
69
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35536795--35536945
44
3.5
44
73
3
153
27
19
24
27
1.99
35536757--35536901
42
3.4
42
76
3
173
28
23
22
24
1.99
35536747--35536969
86
2.6
86
91
1
358
26
22
22
28
1.99
35537001--35537505
88
5.8
88
90
0
751
27
22
20
28
1.99
35537213--35537351
44
3.2
44
68
4
118
27
24
22
25
2.00
35537257--35537393
44
3.1
42
67
12
105
28
22
21
27
1.99
35539822--35539846
3
8.3
3
100
0
50
32
0
0
68
0.90
35539931--35539962
3
10.7
3
93
0
55
31
3
0
65
1.08
35540068--35540093
13
2.0
13
100
0
52
30
0
0
69
0.89
35550360--35550388
15
1.9
15
100
0
58
41
27
13
17
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325