genome.fa.s5.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  107  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34300716--34300752	17	2.2	17	90	4	58	27	0	5	67	1.12
34302523--34302559	15	2.5	15	86	0	56	32	8	0	59	1.27
34314057--34314146	45	2.0	45	88	0	135	25	12	13	48	1.77
34314716--34315282	89	6.4	88	80	4	460	30	17	22	29	1.97
34314719--34315275	44	12.6	44	83	2	452	30	17	22	29	1.97
34315854--34315897	23	1.9	23	95	0	79	52	18	13	15	1.75
34316900--34316936	15	2.5	15	86	0	56	32	8	0	59	1.27
34316917--34316946	12	2.5	12	88	0	51	26	6	0	66	1.16
34317096--34317184	44	2.0	44	97	0	169	34	2	6	56	1.38
34327498--34327530	16	2.1	16	88	5	50	45	9	6	39	1.61
34327702--34327727	9	2.9	9	100	0	52	34	19	11	34	1.88
34330765--34330851	17	5.0	17	72	10	70	68	3	22	4	1.23
34330826--34330850	13	1.9	13	100	0	50	76	0	24	0	0.80
34333349--34333389	14	2.8	14	92	7	64	46	0	19	34	1.50
34335769--34335811	21	2.0	21	95	0	77	37	4	6	51	1.50
34338457--34338512	26	2.2	25	81	6	67	53	0	0	46	1.00
34338458--34338630	61	2.9	60	75	15	178	52	2	1	43	1.23
34341871--34341914	22	2.0	22	100	0	88	45	13	4	36	1.64
34345783--34345810	13	2.2	13	100	0	56	21	7	25	46	1.76
34346745--34346814	22	3.6	19	77	19	65	44	0	4	51	1.21
34346773--34346808	19	1.9	19	88	5	56	36	0	8	55	1.30
34346762--34346814	22	2.6	21	82	11	67	45	0	5	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34348005--34348041	3	12.3	3	100	0	74	67	0	0	32	0.91
34354722--34354762	21	2.0	21	90	0	64	53	21	12	12	1.70
34354776--34354900	21	6.0	21	68	5	83	41	19	20	19	1.91
34354731--34354865	42	3.2	42	80	2	137	42	19	19	18	1.89
34357863--34357963	25	4.0	25	86	0	130	21	24	17	35	1.95
34357854--34357961	50	2.2	50	84	0	144	23	25	16	34	1.95
34357950--34357997	25	1.9	25	87	8	71	29	18	22	29	1.98
34359585--34359618	17	2.0	17	94	0	59	32	11	14	41	1.82
34367359--34367447	32	2.8	32	83	6	117	25	25	17	30	1.98
34372255--34372279	12	2.1	12	100	0	50	0	8	0	92	0.40
34375672--34375920	46	5.5	45	87	2	320	21	21	12	44	1.85
34375672--34375876	90	2.3	91	90	1	313	20	22	12	44	1.85
34375672--34375920	136	1.8	136	88	1	383	21	21	12	44	1.85
34375904--34376015	45	2.5	45	88	2	163	22	24	15	38	1.92
34375904--34376033	45	2.9	42	77	15	118	22	23	16	38	1.93
34376027--34376182	33	4.7	33	72	9	120	24	27	18	29	1.98
34377768--34377792	11	2.3	11	100	0	50	64	8	0	28	1.22
34383225--34383294	30	2.3	30	85	9	90	38	1	10	50	1.45
34383348--34383372	13	1.9	13	100	0	50	32	0	4	64	1.12
34386665--34386691	2	13.5	2	100	0	54	0	48	0	51	1.00
34390098--34390145	17	2.8	17	84	9	53	4	8	10	77	1.12
34393894--34393927	3	11.7	3	93	6	61	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34394292--34394319	2	14.0	2	100	0	56	50	0	0	50	1.00
34396312--34396350	21	2.0	20	85	10	53	41	10	0	48	1.37
34398876--34398965	22	4.1	22	72	5	83	41	15	21	22	1.90
34399538--34399638	42	2.4	42	77	1	103	25	24	27	21	1.99
34400176--34400217	22	1.9	22	85	9	59	78	4	16	0	0.91
34412288--34412347	29	2.0	31	83	6	79	60	10	5	25	1.49
34417125--34417160	10	3.6	10	92	0	63	61	0	8	30	1.26
34417814--34417841	4	7.0	4	100	0	56	25	0	0	75	0.81
34422020--34422058	10	3.9	10	86	0	60	66	2	10	20	1.33
34422020--34422057	20	1.9	20	94	0	67	65	2	10	21	1.35
34425642--34425681	21	1.9	21	85	10	55	65	7	12	15	1.47
34426236--34426607	186	2.0	193	93	4	650	16	17	20	44	1.87
34438911--34439082	93	1.9	91	85	2	236	28	17	17	36	1.93
34439015--34439288	78	3.5	77	81	6	309	33	15	18	31	1.93
34441373--34441428	28	2.0	29	82	10	71	37	3	0	58	1.15
34441419--34441477	24	2.5	23	81	15	59	27	5	3	64	1.30
34442049--34442103	24	2.2	25	78	15	60	36	1	3	58	1.26
34444482--34444523	20	2.0	22	86	9	61	54	0	0	45	0.99
34444494--34444537	22	2.0	22	81	0	52	47	2	0	50	1.13
34447087--34447200	54	2.1	54	96	0	210	39	13	21	25	1.90
34455597--34455626	14	2.1	14	93	0	51	23	23	10	43	1.83
34460705--34460762	25	2.2	26	78	9	64	34	25	24	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34460718--34460779	25	2.5	25	86	2	90	40	22	20	16	1.91
34460854--34460913	26	2.3	26	88	2	86	35	23	25	16	1.95
34460850--34460924	26	2.9	25	76	9	80	36	22	24	17	1.95
34465090--34465141	25	2.1	26	92	7	90	46	19	26	7	1.77
34465119--34465282	43	3.8	43	96	1	294	23	20	32	23	1.98
34465677--34465727	21	2.4	21	73	0	57	1	47	19	31	1.61
34471524--34471581	25	2.2	26	78	9	64	34	25	24	15	1.95
34471537--34471598	25	2.5	25	86	2	90	40	22	20	16	1.91
34471673--34471731	25	2.3	26	88	5	86	35	23	23	16	1.95
34475912--34476090	43	4.2	43	89	2	279	21	20	32	25	1.97
34476164--34476244	31	2.5	31	80	4	81	61	18	3	16	1.48
34476484--34476534	21	2.4	21	73	0	57	1	47	19	31	1.61
34482068--34482264	9	21.6	9	72	14	100	38	1	12	47	1.51
34482068--34482227	69	2.3	68	82	6	180	38	1	11	48	1.48
34482096--34482295	105	1.9	104	88	1	301	39	2	11	47	1.51
34482119--34482295	96	1.8	96	81	9	218	38	2	12	46	1.54
34482362--34482417	15	3.8	15	76	21	64	51	0	1	46	1.11
34486911--34486961	12	4.3	11	79	16	57	39	1	0	58	1.09
34486950--34486981	15	2.1	15	94	0	55	31	9	0	59	1.29
34487993--34488170	41	4.4	41	94	0	295	17	24	25	32	1.97
34487993--34488211	41	5.4	40	90	4	280	17	24	24	34	1.96
34488255--34488281	12	2.2	12	100	0	54	48	29	14	7	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34493274--34493345	20	3.7	20	82	14	73	33	2	5	58	1.36
34493274--34493344	19	3.7	19	87	9	92	33	2	5	57	1.37
34495301--34495409	51	2.1	51	88	3	157	45	7	18	28	1.76
34498050--34498093	22	2.0	23	82	13	56	70	0	9	20	1.14
34500972--34501019	25	2.0	25	87	4	71	62	4	6	27	1.38
34501325--34501363	15	2.6	15	84	12	53	74	0	10	15	1.07
34502922--34503134	45	4.5	45	80	8	158	24	23	20	31	1.98
34502804--34503020	119	1.8	119	90	0	353	25	25	17	31	1.97
34502921--34503084	45	3.5	45	84	5	184	24	25	20	30	1.98
34502963--34503088	45	2.8	45	90	0	189	25	25	18	30	1.98
34511162--34511215	19	2.8	20	83	5	67	48	3	18	29	1.65
34522345--34522387	20	2.2	20	86	0	59	65	9	0	25	1.22
34522690--34522748	26	2.1	29	81	9	70	52	6	0	40	1.28
34525130--34525163	17	2.0	17	100	0	68	41	5	11	41	1.66
34525154--34525179	5	5.2	5	100	0	52	38	0	23	38	1.55
34531879--34531948	13	5.8	12	72	11	54	84	0	7	8	0.78
34531879--34531933	19	2.9	18	89	5	74	85	0	3	10	0.72
34532837--34533228	44	9.0	43	72	13	311	30	18	25	26	1.98
34532832--34533224	132	3.0	132	92	1	657	30	17	25	26	1.97
34533556--34533778	45	5.1	44	72	10	161	32	14	27	25	1.95
34534139--34534172	17	2.0	17	100	0	68	41	5	11	41	1.66
34537225--34537511	62	4.6	62	81	3	319	20	26	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34541444--34541486	19	2.1	21	91	8	72	37	9	18	34	1.83
34544584--34544613	14	2.1	14	93	0	51	76	0	23	0	0.78
34547060--34547101	9	4.6	9	88	5	57	83	0	14	2	0.75
34547060--34547106	19	2.6	18	83	6	58	78	0	17	4	0.90
34547054--34547101	19	2.5	19	82	0	60	83	2	12	2	0.83
34547059--34547121	28	2.3	26	86	7	90	79	0	15	4	0.90
34547067--34547127	19	3.2	20	82	13	58	72	0	21	6	1.07
34547054--34547123	18	3.9	17	78	17	63	77	1	15	5	1.03
34548067--34548846	84	9.3	84	89	3	1171	30	22	21	25	1.99
34548069--34548846	251	3.1	250	89	3	1163	30	22	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325