Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  110  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34994525--34994781
112
2.3
112
85
0
343
39
19
15
26
1.91
34994429--34994776
149
2.3
149
82
1
410
38
18
15
27
1.91
34994467--34994820
37
9.5
37
75
5
123
38
19
14
27
1.91
35002695--35002774
39
2.1
38
88
2
115
22
20
31
26
1.98
35002707--35002784
39
2.0
39
85
2
104
24
21
28
25
1.99
35002745--35002839
39
2.4
38
76
8
93
18
23
30
27
1.98
35010424--35010448
12
2.1
12
100
0
50
16
8
0
76
1.02
35010670--35010707
19
2.0
20
89
5
60
44
13
2
39
1.57
35017593--35017632
10
3.8
11
78
21
50
0
15
0
85
0.61
35017593--35017633
12
3.5
11
87
9
55
0
17
0
82
0.66
35017593--35017632
8
5.1
8
81
6
55
0
15
0
85
0.61
35017673--35017697
12
2.1
12
100
0
50
16
8
0
76
1.02
35017914--35017955
19
2.2
19
87
8
59
45
11
2
40
1.54
35021276--35021303
14
2.0
14
100
0
56
21
28
21
28
1.99
35030223--35030492
41
6.6
41
91
5
379
28
24
19
27
1.99
35032018--35032042
13
1.9
13
100
0
50
68
24
0
8
1.16
35037895--35038164
41
6.6
41
91
5
379
28
24
19
27
1.99
35039688--35039712
13
1.9
13
100
0
50
68
24
0
8
1.16
35047559--35047612
23
2.4
23
84
3
74
12
5
31
50
1.64
35047895--35048027
44
3.0
42
76
6
113
25
20
18
36
1.95
35047975--35048353
94
4.0
92
78
8
352
28
18
15
36
1.92
35048158--35048312
44
3.4
44
67
26
106
28
16
18
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35057887--35057924
17
2.2
17
100
0
76
28
42
5
23
1.76
35058710--35058748
18
2.2
18
86
9
53
10
12
0
76
1.01
35058715--35058743
13
2.1
14
93
6
51
6
13
0
79
0.93
35062826--35062862
19
1.9
19
100
0
74
43
24
21
10
1.84
35076570--35076707
65
2.1
65
94
0
240
30
21
20
28
1.98
35082120--35082179
10
6.0
10
81
11
70
66
1
10
21
1.30
35084161--35084202
12
3.5
11
87
12
57
73
0
2
23
0.94
35084151--35084189
20
2.0
20
94
0
69
69
0
5
25
1.09
35089311--35089349
20
2.0
20
100
0
78
33
0
10
56
1.33
35089878--35089917
19
2.0
20
85
14
55
62
2
12
22
1.42
35091045--35091096
23
2.3
23
89
0
77
15
11
38
34
1.83
35103584--35103909
174
1.9
174
79
3
368
42
21
8
27
1.82
35106566--35106618
22
2.5
21
81
6
63
66
1
3
28
1.20
35107080--35107121
22
1.9
22
85
0
57
59
4
4
30
1.39
35111027--35111060
3
11.3
3
93
0
50
61
0
5
32
1.20
35111620--35111668
11
4.1
13
77
15
52
18
2
6
73
1.14
35117555--35117600
22
2.1
22
84
8
58
67
8
4
19
1.35
35131825--35131859
18
1.9
18
94
0
61
54
2
5
37
1.39
35132387--35132418
3
10.3
3
93
6
55
65
0
3
31
1.08
35133551--35133619
27
2.6
27
95
2
122
14
7
42
36
1.73
35135497--35135540
23
1.9
23
85
0
61
20
13
4
61
1.50
35140393--35140432
14
2.9
14
85
3
55
40
5
0
55
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35142153--35142179
13
2.1
13
100
0
54
70
0
0
29
0.88
35142747--35142789
17
2.4
19
81
11
56
41
0
2
55
1.12
35146025--35146063
16
2.4
16
91
8
62
30
0
12
56
1.37
35146278--35146310
14
2.3
15
89
5
50
33
0
0
66
0.92
35154427--35154467
21
2.0
21
85
9
57
51
4
19
24
1.66
35155698--35155737
18
2.2
18
100
0
80
62
5
10
22
1.46
35155851--35155895
17
2.6
17
83
16
58
71
0
6
22
1.09
35156418--35156539
44
2.8
44
80
8
126
61
2
8
27
1.37
35155974--35156603
3
208.0
3
69
9
190
60
5
7
26
1.46
35157676--35157732
15
3.6
16
76
9
55
7
1
40
50
1.40
35158086--35158137
26
2.0
26
84
3
68
55
3
9
30
1.50
35161973--35162003
3
10.3
3
100
0
62
32
0
0
67
0.91
35162442--35162511
34
2.2
32
82
10
81
57
1
0
41
1.08
35164039--35164105
30
2.2
30
81
7
73
40
5
2
50
1.42
35168577--35169383
44
18.0
44
69
10
348
28
21
18
31
1.97
35168826--35169386
133
4.2
133
84
1
676
28
21
19
30
1.98
35168593--35169029
229
1.9
229
87
0
640
28
21
18
31
1.97
35168828--35169391
266
2.1
266
85
2
758
28
21
19
30
1.98
35168682--35169391
89
7.9
90
70
9
342
28
21
19
31
1.97
35180709--35181174
254
1.8
253
83
1
619
37
19
13
29
1.90
35185725--35185800
33
2.3
33
95
0
134
39
3
40
15
1.66
35190936--35191002
34
2.0
34
82
11
84
46
5
4
43
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35190986--35191021
17
2.1
18
89
5
56
58
0
0
41
0.98
35191157--35191203
17
2.9
17
76
17
55
48
2
0
48
1.13
35192696--35192720
13
1.9
13
100
0
50
36
24
24
16
1.94
35197826--35197899
37
2.0
37
94
0
130
18
5
37
37
1.74
35210515--35210658
72
2.0
72
100
0
288
29
18
13
38
1.89
35217131--35217560
213
2.0
214
91
0
691
22
14
32
30
1.94
35218670--35218921
140
1.8
140
95
0
459
39
4
4
51
1.43
35218894--35218934
19
2.2
19
90
0
64
39
4
2
53
1.35
35218810--35219246
170
2.4
175
86
8
598
38
4
5
50
1.48
35219064--35219116
19
2.8
18
74
8
52
37
5
3
52
1.43
35221584--35221677
3
32.7
3
68
8
52
65
2
6
25
1.27
35221618--35221655
19
2.0
19
94
0
67
73
2
2
21
1.07
35224452--35224502
15
3.4
15
76
15
52
25
33
5
35
1.80
35225236--35225431
107
1.8
108
86
6
290
35
21
11
31
1.89
35225253--35225416
52
3.1
52
68
15
129
34
21
13
29
1.92
35235868--35235910
13
3.5
13
81
9
54
9
0
9
81
0.88
35236057--35236969
176
5.2
174
79
7
814
27
23
17
31
1.97
35236051--35236984
353
2.7
346
77
6
880
27
23
17
31
1.97
35237084--35237334
133
1.9
133
89
3
389
28
25
17
28
1.98
35237575--35237729
64
2.4
64
83
5
186
40
13
15
30
1.86
35238722--35238776
18
3.1
17
78
21
60
10
5
1
81
0.92
35239326--35239388
29
2.2
27
81
13
65
4
12
7
74
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35245643--35245682
12
3.4
12
82
6
55
10
0
7
82
0.84
35245640--35245681
11
3.7
11
79
17
50
11
0
7
80
0.88
35245816--35246745
176
5.3
175
79
5
853
27
22
17
31
1.97
35246858--35247114
133
1.9
133
88
1
381
28
26
16
28
1.97
35247347--35247505
64
2.4
67
83
5
200
41
13
15
30
1.85
35248494--35248556
17
3.4
18
74
10
56
12
4
3
79
1.01
35248508--35248583
36
2.1
36
83
9
93
11
7
2
77
1.08
35249106--35249168
29
2.2
28
83
8
74
4
14
7
73
1.23
35258016--35258059
13
3.4
13
77
0
52
36
22
2
38
1.67
35258142--35258277
46
3.0
46
86
2
175
21
22
15
40
1.91
35258669--35258784
23
5.0
23
69
12
92
31
23
28
16
1.96
35262737--35262887
60
2.5
62
77
9
152
29
19
23
27
1.98
35263920--35263995
29
2.7
27
69
17
64
48
3
0
47
1.20
35263968--35264001
18
1.9
18
88
5
52
47
0
2
50
1.16
35264127--35264174
19
2.3
19
82
13
51
50
16
0
33
1.46
35267147--35267260
51
2.3
50
92
3
185
60
2
13
23
1.45
35267166--35267250
26
3.3
26
65
21
70
56
3
14
25
1.54
35267168--35267254
27
3.3
27
68
19
76
58
3
13
24
1.51
35267147--35267278
51
2.6
50
87
7
153
61
3
11
23
1.46
35267182--35267287
50
2.1
50
82
8
126
60
5
10
23
1.50
35268400--35268445
17
2.7
17
80
9
58
10
0
13
76
1.03
35285545--35285600
25
2.2
25
96
0
103
7
14
30
48
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35286062--35286266
44
4.4
44
66
16
108
29
21
20
27
1.98
35286026--35286704
143
4.7
143
87
1
943
28
21
19
30
1.98
35286723--35286771
20
2.5
20
100
0
98
40
22
12
24
1.88
35287011--35287072
30
2.1
30
100
0
124
33
19
9
37
1.84
35287321--35287444
65
1.9
65
89
0
194
50
8
19
21
1.73
35287896--35288003
11
9.3
12
74
16
68
2
13
2
80
0.93
35287894--35288018
6
20.0
6
73
21
73
4
12
2
80
0.94
35287960--35288020
1
61.0
1
73
0
50
4
6
1
86
0.74
35287909--35288017
47
2.3
46
81
6
112
4
11
2
81
0.94
35287894--35288011
17
6.4
17
73
17
85
3
13
2
80
0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325