genome.fa.s5.2.7.7.80.10.50.1000.288.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  288  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92180300--92180339	11	3.6	11	79	0	53	20	12	10	57	1.63
92180379--92180437	30	2.0	30	96	0	109	30	3	8	57	1.45
92180823--92180886	13	4.9	13	79	7	76	40	23	1	34	1.64
92180952--92180981	3	10.0	3	100	0	60	33	0	0	66	0.92
92191532--92191568	2	18.5	2	100	0	74	51	48	0	0	1.00
92195368--92195430	31	2.0	31	93	0	108	26	20	14	38	1.91
92196823--92196849	14	1.9	14	100	0	54	44	0	3	51	1.19
92211057--92211164	26	4.2	26	89	2	164	37	23	6	32	1.80
92211497--92211537	16	2.7	16	77	7	50	36	2	0	60	1.10
92211572--92211606	14	2.6	13	86	8	52	34	0	0	65	0.93
92211946--92211989	19	2.4	19	85	7	56	52	0	2	45	1.13
92212731--92212802	31	2.3	31	88	4	101	65	6	2	25	1.31
92212729--92212777	22	2.2	23	85	3	64	69	4	2	24	1.17
92212739--92212791	22	2.4	22	78	9	54	67	3	3	24	1.23
92220893--92220947	22	2.7	20	75	8	56	36	7	0	56	1.27
92221396--92221422	11	2.5	11	100	0	54	48	0	0	51	1.00
92230830--92230862	2	16.5	2	93	0	57	54	0	0	45	0.99
92241672--92241789	51	2.3	51	92	2	193	22	43	14	19	1.87
92241672--92241815	51	2.8	51	87	4	157	23	45	12	18	1.84
92245408--92245441	10	3.3	10	92	8	59	8	17	8	64	1.47
92245408--92245441	11	3.2	11	95	4	61	8	17	8	64	1.47
92247480--92247549	29	2.4	29	85	7	97	32	50	1	15	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92247525--92247560	18	2.0	18	94	0	63	25	58	0	16	1.38
92247836--92247977	64	2.2	65	81	10	168	26	4	5	64	1.34
92247950--92247986	19	2.0	18	94	5	65	32	0	0	67	0.91
92247958--92247988	14	2.2	14	94	0	53	32	0	0	67	0.91
92248454--92248692	125	1.9	126	94	0	426	29	14	16	39	1.88
92258720--92259565	133	6.3	133	87	2	1133	30	20	22	27	1.98
92259541--92259830	85	3.4	85	93	1	476	30	23	25	21	1.99
92260114--92260149	18	2.0	18	94	0	63	25	58	0	16	1.38
92260426--92260563	62	2.3	62	81	9	160	26	4	5	63	1.35
92260538--92260574	19	2.0	18	94	5	65	32	0	0	67	0.91
92260546--92260576	14	2.2	14	94	0	53	32	0	0	67	0.91
92261036--92261273	126	1.9	127	94	0	424	30	15	15	37	1.90
92262152--92262211	30	2.0	30	90	0	93	26	1	13	58	1.45
92262196--92262265	36	1.9	36	100	0	140	22	10	21	45	1.81
92262650--92262695	23	2.0	24	91	4	76	30	2	2	65	1.16
92262654--92262729	20	3.7	19	76	15	64	28	1	2	67	1.12
92271136--92271220	7	12.9	7	73	9	63	45	35	1	17	1.56
92271136--92271221	6	13.2	6	73	15	55	45	34	1	18	1.57
92271136--92271221	13	6.5	13	72	10	68	45	34	1	18	1.57
92271240--92271284	21	2.1	21	83	0	54	26	6	28	37	1.82
92272708--92272760	18	3.1	17	83	10	72	67	1	0	30	1.01
92272914--92272951	20	1.9	20	88	0	58	36	0	2	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92277229--92277345	60	2.0	59	87	1	171	35	9	11	43	1.74
92285300--92285365	30	2.1	31	86	8	98	28	15	4	51	1.63
92285310--92285375	30	2.2	30	91	0	105	24	13	6	56	1.60
92300664--92300692	6	4.8	6	100	0	58	68	0	0	31	0.89
92301223--92301307	5	16.4	5	78	12	75	56	0	2	41	1.12
92301224--92301307	13	6.2	13	74	23	68	57	0	2	40	1.12
92301224--92301310	18	4.9	18	73	15	74	58	0	2	39	1.11
92302044--92302068	13	1.9	13	100	0	50	36	0	0	64	0.94
92312292--92312340	24	2.0	24	84	7	64	32	8	6	53	1.55
92312935--92313069	47	2.9	47	84	3	155	40	28	13	17	1.87
92316052--92316098	21	2.2	22	92	3	78	21	19	38	21	1.94
92321455--92321627	88	2.0	88	98	0	337	20	10	19	49	1.77
92323184--92323221	17	2.2	17	100	0	76	21	10	23	44	1.83
92323613--92323678	33	2.0	33	96	0	123	59	10	12	18	1.61
92324654--92324683	15	2.0	15	93	0	51	63	0	0	36	0.95
92329026--92329100	37	2.0	37	100	0	150	40	18	8	33	1.80
92332828--92333308	131	3.6	130	78	5	450	27	19	18	33	1.96
92350620--92350677	21	2.7	20	79	12	62	22	3	3	70	1.17
92350669--92350706	13	3.0	13	84	3	51	44	0	0	55	0.99
92366008--92366041	5	6.6	5	93	6	59	82	0	0	17	0.67
92366008--92366041	16	2.1	16	100	0	68	82	0	0	17	0.67
92368829--92369075	55	4.7	52	76	10	191	35	18	24	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92368839--92369036	108	1.8	110	86	4	294	34	17	24	23	1.96
92369280--92369310	16	1.9	16	93	0	53	41	0	22	35	1.54
92376347--92376544	55	3.7	52	77	11	193	33	18	23	24	1.96
92376345--92376542	108	1.8	110	87	4	303	33	17	24	24	1.96
92376786--92376816	16	1.9	16	93	0	53	41	0	22	35	1.54
92382633--92382700	23	3.0	23	72	12	68	35	17	26	20	1.95
92386079--92386162	42	2.0	42	100	0	168	23	21	16	38	1.93
92388911--92389082	46	3.7	47	79	13	180	22	20	27	29	1.99
92389309--92389346	19	2.0	20	85	15	53	36	0	23	39	1.55
92396504--92396676	46	3.8	45	76	10	163	23	19	27	30	1.98
92396501--92396671	93	1.8	93	88	2	263	22	19	28	29	1.98
92396901--92396938	19	2.0	20	85	15	53	36	0	23	39	1.55
92399602--92399638	17	2.1	19	90	10	60	16	0	10	72	1.10
92404907--92405014	26	4.2	26	93	0	189	32	7	24	36	1.83
92408628--92408779	21	7.2	21	73	0	124	17	19	19	44	1.87
92408634--92408781	42	3.5	42	83	0	188	16	20	18	45	1.86
92409123--92409147	4	6.2	4	100	0	50	72	0	0	28	0.86
92410570--92410678	20	5.6	19	76	18	100	34	4	0	59	1.24
92410591--92410639	22	2.2	22	82	13	57	36	8	0	55	1.30
92410553--92410678	25	5.2	23	70	22	62	34	3	0	61	1.20
92410563--92410714	77	1.9	78	82	10	186	34	5	1	57	1.31
92421943--92421971	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92422842--92423425	205	2.8	205	92	0	954	30	18	22	28	1.97
92425055--92425170	7	16.6	7	69	23	68	37	3	0	57	1.21
92425062--92425170	20	5.6	19	75	18	100	36	3	0	58	1.22
92425083--92425131	22	2.2	22	82	13	57	36	8	0	55	1.30
92425062--92425195	20	7.1	18	71	19	89	35	4	1	58	1.28
92425051--92425119	22	2.9	23	76	19	54	37	2	1	57	1.22
92425061--92425206	77	1.9	78	81	11	183	36	5	1	56	1.31
92427391--92427439	26	2.0	25	84	8	64	65	10	6	18	1.43
92427930--92427995	19	3.2	21	87	8	73	36	18	9	36	1.82
92427947--92428044	19	5.2	19	90	7	155	34	17	10	37	1.83
92427947--92428044	36	2.6	37	88	9	144	34	17	10	37	1.83
92428433--92429380	206	4.6	206	91	1	1454	28	21	18	31	1.97
92429350--92429718	44	8.4	44	74	9	281	28	24	15	30	1.96
92429342--92429697	132	2.7	132	92	0	595	27	24	16	31	1.96
92429452--92429820	175	2.1	175	88	1	542	28	24	17	30	1.97
92429510--92429810	88	3.4	86	72	12	247	27	24	17	30	1.97
92429342--92429820	44	10.9	43	71	11	224	28	24	16	30	1.97
92430672--92430703	14	2.4	14	94	5	57	6	6	0	87	0.67
92435785--92435833	26	2.0	25	84	8	64	65	6	6	22	1.38
92436322--92436387	19	3.2	21	87	6	64	36	19	9	34	1.84
92436339--92436472	19	7.2	19	91	8	222	35	15	10	38	1.82
92436339--92436466	36	3.4	36	95	4	220	35	14	10	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92436339--92436472	55	2.4	54	92	7	216	35	15	10	38	1.82
92443351--92443595	27	9.1	27	85	2	300	43	19	14	22	1.87
92445870--92445905	17	2.1	18	89	5	56	8	19	11	61	1.54
92446535--92446700	27	6.1	27	84	5	183	40	18	17	23	1.91
92446535--92446700	81	2.0	81	84	2	217	40	18	17	23	1.91
92446535--92446700	54	3.1	53	85	3	215	40	18	17	23	1.91
92454517--92454645	64	2.0	64	92	0	213	29	20	10	39	1.86
92461388--92461453	33	2.0	33	100	0	132	27	27	15	30	1.96
92466139--92466196	29	2.0	29	96	0	107	24	15	22	37	1.93
92467751--92467960	43	4.9	42	71	9	140	28	16	23	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325