genome.fa.s5.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  148  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47082083--47082330	47	5.3	47	89	0	379	33	8	29	27	1.87
47084278--47084390	38	3.0	38	82	10	140	30	15	28	25	1.96
47084448--47084638	40	4.8	40	95	0	337	20	24	29	25	1.99
47084807--47084861	25	2.2	25	87	6	76	30	12	29	27	1.93
47084846--47084997	28	5.4	28	67	12	105	21	20	28	28	1.98
47084844--47085026	56	3.3	56	96	0	330	21	19	31	27	1.97
47088084--47088303	47	4.7	47	90	0	359	32	9	30	27	1.89
47088084--47088303	94	2.3	94	96	0	395	32	9	30	27	1.89
47104243--47104463	39	5.7	39	92	0	345	19	22	28	28	1.98
47112153--47112211	29	2.0	29	86	0	82	18	23	22	35	1.96
47114214--47114287	6	12.5	6	84	8	98	81	0	2	16	0.81
47116295--47116409	55	2.1	53	82	7	142	19	22	22	35	1.96
47116297--47116385	27	3.2	28	88	3	137	17	24	23	33	1.96
47125866--47126078	47	4.6	45	79	11	209	23	28	20	27	1.99
47125866--47126172	47	6.6	45	74	13	203	23	27	20	28	1.99
47125816--47126175	94	3.9	90	76	12	282	23	28	20	28	1.99
47126515--47126572	30	1.9	30	92	0	98	27	25	13	32	1.94
47128254--47128383	47	2.8	47	83	3	154	24	15	26	33	1.95
47132384--47132413	11	2.6	12	89	10	53	23	6	33	36	1.81
47134958--47135080	28	4.4	28	88	2	167	34	28	11	26	1.91
47136937--47136997	27	2.3	27	82	5	70	44	14	13	27	1.83
47139789--47139839	25	2.0	25	85	7	68	31	19	17	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47142082--47142209	47	2.7	47	89	3	177	33	26	15	24	1.95
47149050--47149227	27	6.6	27	79	3	115	28	28	16	26	1.97
47149050--47149227	54	3.3	55	80	10	204	28	28	16	26	1.97
47149071--47149226	82	1.9	81	85	3	215	28	28	16	26	1.97
47151604--47151696	45	2.0	47	85	10	129	36	24	12	25	1.91
47163346--47163382	17	2.1	17	90	5	56	2	37	2	56	1.28
47164611--47164676	34	1.9	34	84	6	89	24	22	24	28	1.99
47170521--47170589	22	3.1	22	82	0	75	43	15	20	20	1.88
47178324--47178508	79	2.3	81	83	7	227	24	22	27	25	2.00
47178324--47178508	40	4.7	40	84	6	225	24	22	27	25	2.00
47178377--47178541	79	2.1	79	83	6	201	26	21	26	26	1.99
47182717--47182847	47	2.8	46	84	4	172	32	25	16	25	1.96
47188648--47188899	39	6.5	38	88	4	360	30	29	21	18	1.97
47188972--47189037	28	2.4	28	86	0	96	30	22	7	39	1.82
47196044--47196163	41	2.9	41	88	0	168	38	15	25	20	1.92
47196871--47196962	27	3.5	27	84	7	118	15	43	21	19	1.87
47198944--47199024	22	3.5	22	68	12	56	37	3	2	56	1.30
47199427--47199517	9	10.6	9	71	15	68	46	17	1	35	1.56
47199438--47199554	18	6.7	18	68	18	77	46	16	1	35	1.57
47199427--47199549	54	2.4	53	86	8	164	45	17	1	35	1.58
47203635--47203942	153	2.0	153	86	3	433	32	7	15	45	1.73
47203933--47204036	42	2.5	42	85	3	129	29	10	19	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47206541--47206586	20	2.3	20	92	0	74	21	32	0	45	1.52
47207358--47207486	40	3.2	40	85	2	170	38	20	25	15	1.92
47207385--47207450	20	3.3	20	77	8	80	40	21	25	12	1.88
47207374--47207486	20	5.7	19	70	15	68	41	20	23	14	1.89
47216282--47216332	26	2.0	26	96	0	93	11	23	35	29	1.90
47216380--47216431	26	2.0	26	96	0	95	13	23	34	28	1.92
47216479--47216531	26	2.0	26	96	0	97	15	22	33	28	1.94
47216204--47216563	100	3.6	100	93	3	582	19	20	30	30	1.97
47223856--47223907	26	2.0	26	96	0	95	13	23	34	28	1.92
47223778--47223985	104	2.0	104	90	4	332	20	18	29	31	1.96
47223882--47224061	77	2.3	77	95	1	317	23	18	26	30	1.98
47224036--47224087	26	2.0	26	96	0	95	13	23	34	28	1.92
47228650--47228722	37	1.9	38	97	2	139	28	0	16	54	1.42
47230265--47230392	31	4.4	31	77	13	126	48	12	18	20	1.80
47230244--47230392	55	2.7	55	85	5	176	48	12	18	20	1.80
47230244--47230336	6	15.3	6	82	10	118	50	15	17	17	1.78
47230511--47230570	27	2.3	26	85	2	75	35	20	23	21	1.96
47230896--47231278	27	14.2	27	84	2	410	42	6	19	31	1.77
47230896--47231332	54	8.1	54	81	3	389	41	7	19	32	1.79
47231270--47231403	27	5.0	26	76	10	126	29	9	21	38	1.85
47231255--47231424	54	3.2	52	80	7	180	30	9	20	40	1.84
47231300--47231424	27	4.7	26	73	8	99	30	8	21	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47232531--47232592	30	2.1	30	96	0	115	27	35	4	32	1.78
47236382--47236481	6	16.3	6	66	15	53	51	13	17	19	1.77
47236396--47236481	31	2.8	31	89	0	118	51	12	17	18	1.76
47236600--47236682	27	3.0	26	78	10	76	33	20	24	21	1.97
47236893--47237248	27	13.2	27	81	4	360	41	7	21	29	1.80
47236893--47237248	81	4.4	81	82	2	401	41	7	21	29	1.80
47237213--47237318	54	2.0	54	81	10	128	32	9	20	37	1.85
47237270--47237394	27	4.7	27	78	8	121	28	9	23	38	1.86
47237226--47237394	54	3.2	53	79	7	171	29	9	21	39	1.85
47239877--47239977	37	2.8	37	92	1	159	26	31	16	24	1.97
47240096--47242082	47	41.4	47	89	6	2946	30	29	8	32	1.87
47240096--47242082	143	13.8	141	91	5	3144	30	29	8	32	1.87
47240096--47242082	190	10.4	188	91	5	3171	30	29	8	32	1.87
47240927--47240977	23	2.3	23	93	3	86	27	29	15	27	1.96
47240880--47241026	72	2.1	71	93	3	253	29	28	10	30	1.91
47240833--47241073	119	2.1	117	94	2	421	30	29	9	30	1.89
47244879--47245050	46	3.7	46	75	13	181	29	26	20	23	1.99
47244884--47245054	93	1.8	93	92	0	288	28	27	21	22	1.99
47245452--47245510	30	2.0	29	83	3	73	28	23	8	38	1.84
47251264--47251366	37	2.8	37	93	0	170	27	32	17	23	1.97
47251507--47251777	48	5.3	55	82	11	220	30	28	8	32	1.86
47251539--47252971	48	30.4	48	90	4	2105	29	27	7	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47251536--47252964	514	2.8	514	95	0	2498	29	27	7	35	1.85
47256558--47256754	40	4.9	40	89	1	281	25	29	21	22	1.99
47258031--47258133	37	2.8	37	90	0	170	25	31	19	24	1.98
47258306--47258805	48	10.4	48	93	0	822	29	27	8	34	1.86
47262950--47262988	20	2.0	20	89	0	60	35	12	0	51	1.40
47265306--47265368	31	2.0	31	93	0	108	26	17	11	44	1.82
47270729--47271051	47	6.8	49	92	4	511	32	8	30	29	1.86
47270729--47271051	96	3.4	96	93	2	526	32	8	30	29	1.86
47276978--47277615	47	13.5	47	91	3	969	28	29	8	33	1.87
47276978--47277615	96	6.7	96	91	4	976	28	29	8	33	1.87
47277245--47277367	22	5.3	22	63	18	61	27	30	8	32	1.87
47276978--47277615	143	4.5	140	91	3	924	28	29	8	33	1.87
47283917--47284135	40	5.6	38	82	9	205	24	27	21	26	1.99
47283945--47284136	74	2.5	75	80	10	210	25	27	20	27	1.99
47283919--47284133	114	1.9	116	80	9	262	24	27	20	26	1.99
47288014--47288079	27	2.4	27	84	0	87	22	16	19	40	1.91
47288028--47288087	27	2.2	27	81	0	66	23	18	18	40	1.92
47291270--47291313	16	2.8	15	79	6	52	56	15	20	6	1.62
47291881--47291939	27	2.2	27	90	0	91	16	18	23	40	1.91
47312286--47312390	40	2.6	41	77	8	117	23	23	26	25	2.00
47319021--47319054	12	2.8	12	95	0	59	50	5	8	35	1.58
47327567--47327606	21	1.9	21	89	0	62	60	10	2	27	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47327992--47328085	28	3.2	28	66	21	75	38	18	20	23	1.93
47328723--47328776	27	2.0	27	89	3	83	38	20	18	22	1.93
47328777--47328948	27	6.4	27	86	0	227	23	20	20	36	1.95
47335117--47335155	16	2.4	17	86	4	53	7	10	35	46	1.67
47346669--47346694	13	2.0	13	100	0	52	15	38	30	15	1.88
47354338--47354397	27	2.3	26	82	2	66	35	18	23	23	1.96
47355137--47355219	27	3.1	27	91	1	132	20	22	20	36	1.95
47362144--47362195	27	2.0	26	84	3	68	34	21	26	17	1.95
47371902--47371938	16	2.3	16	95	0	65	48	13	24	13	1.78
47372156--47372250	29	3.3	29	85	2	122	30	12	26	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325